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The map label for this gene is 87201090

Identifier: 87201090

GI number: 87201090

Start: 3296966

End: 3297730

Strand: Reverse

Name: 87201090

Synonym: Saro_3078

Alternate gene names: NA

Gene position: 3297730-3296966 (Counterclockwise)

Preceding gene: 87201091

Following gene: 87201089

Centisome position: 92.59

GC content: 67.19

Gene sequence:

>765_bases
TTGGACACGCCCGCAGCGCAAGCGCTGGTCGACAGGCCGTCGGAGCAACCTGGCTGGTCCGAACTGCACCCCGATGACGA
ACTGATCGACGTCGCCTTCGTGCCCGATGGCAGTCGCCTGCGGCTGGTCCGGAACGGCAGCGAATACGTGATCCTGCTGG
ACCACCACGAACTGATGAGCACCGACGTGGTCGCCTCCGAACAGGAGCTGGCCCGGGTGACCTGCGAGAGGCTGGGGGCG
GTACCGGGCCTGCAGATGCTGATCGGTGGCTATGGCATGGGCTTCACCCTGCGTGCCGCGCTGGCGGCGCTGGGGCAGGA
CGCCGAGGTTACCGTTGCCGAGATCGTGCCGAAGATCGTGGAATGGGCGCGCGGGCCGATGCGGGACTTTACAGCGGGAT
GCCTTGACGATCCGCGGGTGCAGCTCGTCGAGGAGGATGTCGGCATGCTGATCGCGGCGGCAAGGGGCGGCTACGATGCG
ATCCTGCTGGATGTCGACAACGGTCCCGAAGGCCTGACGCGCCGGGTGAACGACTGGCTCTATTCCGCATCGGGACTTGA
AGCGGCGCGTACCGCGCTGCGTCCGGGCGGAATCCTGGCAATCTGGTCGGCAACGCCCGATGACCGGTTCACCGGACTGC
TGGCACGATCCGGCTTTGAGGTGAACGTGGTGGCGGTCGAAGCGCGCGAGGGCGTGCGGGGCAACGAGGAGGCGTGGAAG
CACGCGCTCATTCTGGCTCGCAAGGCGGTGACGAACGGGGGGTGA

Upstream 100 bases:

>100_bases
CGCGGCGCGCGCCGCCCCGCCGCCCCCACTGACCGAAGCCGAGCGCAAGGCGATCCGCGATGCCAAGTATGCCGCCCGCA
AGGCGCGGAAGAAGTAGGTC

Downstream 100 bases:

>100_bases
TGCCCTCCGCACCTCCTTGCTGGGCCGAATGCGGGCTTGCCGTTTGCCCGTTCTGCCCCCATATAGGATGCATCGCCGGG
CCTGCATTGCACACCGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MDTPAAQALVDRPSEQPGWSELHPDDELIDVAFVPDGSRLRLVRNGSEYVILLDHHELMSTDVVASEQELARVTCERLGA
VPGLQMLIGGYGMGFTLRAALAALGQDAEVTVAEIVPKIVEWARGPMRDFTAGCLDDPRVQLVEEDVGMLIAAARGGYDA
ILLDVDNGPEGLTRRVNDWLYSASGLEAARTALRPGGILAIWSATPDDRFTGLLARSGFEVNVVAVEAREGVRGNEEAWK
HALILARKAVTNGG

Sequences:

>Translated_254_residues
MDTPAAQALVDRPSEQPGWSELHPDDELIDVAFVPDGSRLRLVRNGSEYVILLDHHELMSTDVVASEQELARVTCERLGA
VPGLQMLIGGYGMGFTLRAALAALGQDAEVTVAEIVPKIVEWARGPMRDFTAGCLDDPRVQLVEEDVGMLIAAARGGYDA
ILLDVDNGPEGLTRRVNDWLYSASGLEAARTALRPGGILAIWSATPDDRFTGLLARSGFEVNVVAVEAREGVRGNEEAWK
HALILARKAVTNGG
>Mature_254_residues
MDTPAAQALVDRPSEQPGWSELHPDDELIDVAFVPDGSRLRLVRNGSEYVILLDHHELMSTDVVASEQELARVTCERLGA
VPGLQMLIGGYGMGFTLRAALAALGQDAEVTVAEIVPKIVEWARGPMRDFTAGCLDDPRVQLVEEDVGMLIAAARGGYDA
ILLDVDNGPEGLTRRVNDWLYSASGLEAARTALRPGGILAIWSATPDDRFTGLLARSGFEVNVVAVEAREGVRGNEEAWK
HALILARKAVTNGG

Specific function: Unknown

COG id: COG0421

COG function: function code E; Spermidine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27309; Mature: 27309

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTPAAQALVDRPSEQPGWSELHPDDELIDVAFVPDGSRLRLVRNGSEYVILLDHHELMS
CCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCHHHH
TDVVASEQELARVTCERLGAVPGLQMLIGGYGMGFTLRAALAALGQDAEVTVAEIVPKIV
HHHHCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHH
EWARGPMRDFTAGCLDDPRVQLVEEDVGMLIAAARGGYDAILLDVDNGPEGLTRRVNDWL
HHCCCCHHHHHCCCCCCCHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHH
YSASGLEAARTALRPGGILAIWSATPDDRFTGLLARSGFEVNVVAVEAREGVRGNEEAWK
HCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHH
HALILARKAVTNGG
HHHHHHHHHHCCCC
>Mature Secondary Structure
MDTPAAQALVDRPSEQPGWSELHPDDELIDVAFVPDGSRLRLVRNGSEYVILLDHHELMS
CCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCHHHH
TDVVASEQELARVTCERLGAVPGLQMLIGGYGMGFTLRAALAALGQDAEVTVAEIVPKIV
HHHHCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHH
EWARGPMRDFTAGCLDDPRVQLVEEDVGMLIAAARGGYDAILLDVDNGPEGLTRRVNDWL
HHCCCCHHHHHCCCCCCCHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHH
YSASGLEAARTALRPGGILAIWSATPDDRFTGLLARSGFEVNVVAVEAREGVRGNEEAWK
HCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHH
HALILARKAVTNGG
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA