| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is nasD [H]
Identifier: 87200980
GI number: 87200980
Start: 3185650
End: 3188145
Strand: Reverse
Name: nasD [H]
Synonym: Saro_2968
Alternate gene names: 87200980
Gene position: 3188145-3185650 (Counterclockwise)
Preceding gene: 87200981
Following gene: 87200979
Centisome position: 89.51
GC content: 66.67
Gene sequence:
>2496_bases GTGAACGCCCCGACGAGTTTCAGCCAGAAGGACCAGCCGGCGCAAGCGCGTGAACGGCTGGTGGTCATCGGCAACGGCAT GGCCGGGTGCCGGGCGGTGGAGGAAATCCTCGCTCGCGATCCCGCCCGCTTCGACGTCACGATCTTCGGCGCGGAACCGC GCGTGAACTACAACCGGATCATGCTTTCGCCCGTGCTGGCGGGCGAGAAGGCGTTCGACGACATCGTGATCAACGATGCC TCCTGGTACGCCGACAACGGCATCACGCTGGTGTCGGGGGATCCGGTCGTGTCGATCGACCGCGAGACGCAGACGGTCGT GGCTCGGTCCGGCCGGGTCGAGCCCTACGATCGCCTGCTGATCGCCACCGGCTCCGACCCGTTCATCATTCCGGTGCCCG GACACGATCTTCCCGGCGTCGTTACCTTCCGCGATCTCGATGACGTGGAGCGCATGCTGGCCGCCTCGGAGCGGGGCGGC AGTGCGGTCGTGATCGGGGGCGGGCTGCTCGGCCTCGAGGCGGCACATGGCCTGGCCCTGCGCGGGATGAAGGTCACCGT TGTCCACCTGATGCCGACGCTGATGGAGCGGCAGCTCGACGAGGCAGCGGGCTACCTTCTGCGCAGCGAGCTGGAGCGAC GCGGGCAGACCATCGTCACCGGGGGGGACACCGCCGAGATCCTGGGCAGGGACGGCCATGTCTCGGGCGTGAAGCTCAAG GACGGGCGCGAGTTCGCGGCCGACATCGTCGTGATGGCGGTCGGCATCCGCCCGGCGACGGGCCTGGCGCGCGCCGCGGG CCTCGACGTCGAGCGCGGCATCCTTGTCGATGATCACATGATGACCTCGGACCCGGCGGTCATGGCCGTGGGCGAATGCG TGCAGCATCGTGGCCAGTGCTACGGCCTTGTCGCGCCGCTGTGGGACATGTGCCGTGCCCTGGCCGACTGCGTGACCGGC AACCCCAGCGGATACGAAGGCTCGGTGACCTCCACCAAGCTCAAGGTTTCGGGGATCGACCTGTTCTCGGCCGGAGACTT TTCCGGAGGCGAAGGGGCCGAGGATATCGTCATGCGCGATGCCTCGCGCGGGATATACAAGCGCGTGATCGTCCGCGAGG ACCGCGTGGTGGGCGCCGTGCTTTACGGCGATACCGGCGACGGTTCCTGGTACTTCGACCTGCTGAAGAAGGGCGAGGAC ATCTCGGAAATCCGCGAGGCGCTGATCTTCGGGCAGGCCTTTGCCGCGGGAGGCGCCCTTGCGGACCCTAATGCAGCCGT TGCCGCCCTTTCGGACGATGCCGAAATCTGCGGTTGCAACGGCGTTTCCAAGGGCAAGGTGGTCGAGACCATCAAGGGCG GGGCATGCAGCCTCGATGCGGTCCGCAGCCAGTGCAAGGCGTCCGCGAGTTGCGGCAGCTGCACGGGCCTTGTCGAAAGC CTGCTGCGCCTGACGCTGGGCGGAGAGGTCGAGGCCGGGCCGAAGACCATGTGCAAGTGCACAAGCTTCACCCATTCCGA CGTGCGCCGCCTGATCGTGGAGAAGAACCTGAGGCTTATCCCGCAGGTCATGCAGGAACTGGGCTGGTCGACGCCCGATG GCTGCGCCTCGTGCCGCCCCGCGCTCAACTACTACCTGCTCTGCGCCTGGCCGGGCGAATATGAAGACGATCAGCAGAGC CGCTTCGTCAACGAGCGCATGCACGCCAACATCCAGAAGGACGGCACCTATTCCGTGGTTCCGCGCATGTGGGGCGGGCT TACCAACCCCCGCGAACTGCGCGCCATCGCCGACGTGGTCGAGAAGTACAATGCGCCGATGGTCAAGGTGACCGGCGGCC AGCGGCTGGATATCTTCGGCATCCGCAAGGAGGACCTGCCGGCGGTCTGGGCGGACCTGAACGCGGCGGGGATGGTGTCG GGCCATGCCTACGGCAAGTCGCTGCGCACGGTGAAGACTTGTGTCGGATCGGAATGGTGCCGCTTCGGTACGCAGGATTC CACCGGACTGGGCGTGAAGCTGGAACAGATGACGTGGGGCTCCTGGATGCCCCACAAGTTCAAGATCGCCGTATCGGGCT GCCCGCGCAATTGCGCCGAAGCGACGATCAAGGACTTCGGGGTGGTCTGCGTCGACAGCGGCTATGAACTCCATGTCGGC GGCAACGGCGGGATCAAGGTCCGCGCGACCGATCTGCTCTGCCGCGTCGCCACCGAGGCCGAGGCGATGGAGGTCTGCGC GGCTTTCATCCAGCTTTACCGCGAACAGGCATGGTATCTCGAGCGGACCGCCCCGTGGATCGAGCGCGTGGGTCTGGAAC ACGTGAAGGCCGCGTTGTTCGACGATCCCGAGGCCGTCGCCACGCTGGCCGCGCGGTTCCGCCATTCCCAGCAGTTCATG CAGGACGATCCCTGGGCAAAGCGCGCCCGCGGCGCGGACGCGGAACTGCACCAGCACCTGGCCGAGGTGCGCCCCTTCCA GATGGAGAATGCATGA
Upstream 100 bases:
>100_bases AATTCAACATCGCGTGGCAATGTCGCCGCCCAGACCTCCCCAAAAGGGATGCGTTCGGGCGGCTTTTTCGTGTTGCGCGT CTGCCAGAGGGAAGACCCCA
Downstream 100 bases:
>100_bases TGATCGGCGAATGGCTCGATATCGGCCCTGTCAGCCAGATTTCCCCGGGCAATGCCCGCACGCTGCCGGTCGTCGGCGGC GAGGAGATCGCGGTGTTCCA
Product: assimilatory nitrite reductase (NAD(P)H) large subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 831; Mature: 831
Protein sequence:
>831_residues MNAPTSFSQKDQPAQARERLVVIGNGMAGCRAVEEILARDPARFDVTIFGAEPRVNYNRIMLSPVLAGEKAFDDIVINDA SWYADNGITLVSGDPVVSIDRETQTVVARSGRVEPYDRLLIATGSDPFIIPVPGHDLPGVVTFRDLDDVERMLAASERGG SAVVIGGGLLGLEAAHGLALRGMKVTVVHLMPTLMERQLDEAAGYLLRSELERRGQTIVTGGDTAEILGRDGHVSGVKLK DGREFAADIVVMAVGIRPATGLARAAGLDVERGILVDDHMMTSDPAVMAVGECVQHRGQCYGLVAPLWDMCRALADCVTG NPSGYEGSVTSTKLKVSGIDLFSAGDFSGGEGAEDIVMRDASRGIYKRVIVREDRVVGAVLYGDTGDGSWYFDLLKKGED ISEIREALIFGQAFAAGGALADPNAAVAALSDDAEICGCNGVSKGKVVETIKGGACSLDAVRSQCKASASCGSCTGLVES LLRLTLGGEVEAGPKTMCKCTSFTHSDVRRLIVEKNLRLIPQVMQELGWSTPDGCASCRPALNYYLLCAWPGEYEDDQQS RFVNERMHANIQKDGTYSVVPRMWGGLTNPRELRAIADVVEKYNAPMVKVTGGQRLDIFGIRKEDLPAVWADLNAAGMVS GHAYGKSLRTVKTCVGSEWCRFGTQDSTGLGVKLEQMTWGSWMPHKFKIAVSGCPRNCAEATIKDFGVVCVDSGYELHVG GNGGIKVRATDLLCRVATEAEAMEVCAAFIQLYREQAWYLERTAPWIERVGLEHVKAALFDDPEAVATLAARFRHSQQFM QDDPWAKRARGADAELHQHLAEVRPFQMENA
Sequences:
>Translated_831_residues MNAPTSFSQKDQPAQARERLVVIGNGMAGCRAVEEILARDPARFDVTIFGAEPRVNYNRIMLSPVLAGEKAFDDIVINDA SWYADNGITLVSGDPVVSIDRETQTVVARSGRVEPYDRLLIATGSDPFIIPVPGHDLPGVVTFRDLDDVERMLAASERGG SAVVIGGGLLGLEAAHGLALRGMKVTVVHLMPTLMERQLDEAAGYLLRSELERRGQTIVTGGDTAEILGRDGHVSGVKLK DGREFAADIVVMAVGIRPATGLARAAGLDVERGILVDDHMMTSDPAVMAVGECVQHRGQCYGLVAPLWDMCRALADCVTG NPSGYEGSVTSTKLKVSGIDLFSAGDFSGGEGAEDIVMRDASRGIYKRVIVREDRVVGAVLYGDTGDGSWYFDLLKKGED ISEIREALIFGQAFAAGGALADPNAAVAALSDDAEICGCNGVSKGKVVETIKGGACSLDAVRSQCKASASCGSCTGLVES LLRLTLGGEVEAGPKTMCKCTSFTHSDVRRLIVEKNLRLIPQVMQELGWSTPDGCASCRPALNYYLLCAWPGEYEDDQQS RFVNERMHANIQKDGTYSVVPRMWGGLTNPRELRAIADVVEKYNAPMVKVTGGQRLDIFGIRKEDLPAVWADLNAAGMVS GHAYGKSLRTVKTCVGSEWCRFGTQDSTGLGVKLEQMTWGSWMPHKFKIAVSGCPRNCAEATIKDFGVVCVDSGYELHVG GNGGIKVRATDLLCRVATEAEAMEVCAAFIQLYREQAWYLERTAPWIERVGLEHVKAALFDDPEAVATLAARFRHSQQFM QDDPWAKRARGADAELHQHLAEVRPFQMENA >Mature_831_residues MNAPTSFSQKDQPAQARERLVVIGNGMAGCRAVEEILARDPARFDVTIFGAEPRVNYNRIMLSPVLAGEKAFDDIVINDA SWYADNGITLVSGDPVVSIDRETQTVVARSGRVEPYDRLLIATGSDPFIIPVPGHDLPGVVTFRDLDDVERMLAASERGG SAVVIGGGLLGLEAAHGLALRGMKVTVVHLMPTLMERQLDEAAGYLLRSELERRGQTIVTGGDTAEILGRDGHVSGVKLK DGREFAADIVVMAVGIRPATGLARAAGLDVERGILVDDHMMTSDPAVMAVGECVQHRGQCYGLVAPLWDMCRALADCVTG NPSGYEGSVTSTKLKVSGIDLFSAGDFSGGEGAEDIVMRDASRGIYKRVIVREDRVVGAVLYGDTGDGSWYFDLLKKGED ISEIREALIFGQAFAAGGALADPNAAVAALSDDAEICGCNGVSKGKVVETIKGGACSLDAVRSQCKASASCGSCTGLVES LLRLTLGGEVEAGPKTMCKCTSFTHSDVRRLIVEKNLRLIPQVMQELGWSTPDGCASCRPALNYYLLCAWPGEYEDDQQS RFVNERMHANIQKDGTYSVVPRMWGGLTNPRELRAIADVVEKYNAPMVKVTGGQRLDIFGIRKEDLPAVWADLNAAGMVS GHAYGKSLRTVKTCVGSEWCRFGTQDSTGLGVKLEQMTWGSWMPHKFKIAVSGCPRNCAEATIKDFGVVCVDSGYELHVG GNGGIKVRATDLLCRVATEAEAMEVCAAFIQLYREQAWYLERTAPWIERVGLEHVKAALFDDPEAVATLAARFRHSQQFM QDDPWAKRARGADAELHQHLAEVRPFQMENA
Specific function: Required for nitrite assimilation [H]
COG id: COG1251
COG function: function code C; NAD(P)H-nitrite reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitrite and sulfite reductase 4Fe-4S domain family [H]
Homologues:
Organism=Homo sapiens, GI21389617, Length=348, Percent_Identity=27.2988505747126, Blast_Score=115, Evalue=2e-25, Organism=Homo sapiens, GI65787454, Length=348, Percent_Identity=27.2988505747126, Blast_Score=115, Evalue=2e-25, Organism=Homo sapiens, GI226437568, Length=348, Percent_Identity=27.2988505747126, Blast_Score=115, Evalue=3e-25, Organism=Homo sapiens, GI4757732, Length=273, Percent_Identity=28.2051282051282, Blast_Score=70, Evalue=6e-12, Organism=Homo sapiens, GI22202629, Length=273, Percent_Identity=28.2051282051282, Blast_Score=70, Evalue=6e-12, Organism=Escherichia coli, GI1789765, Length=779, Percent_Identity=36.8421052631579, Blast_Score=476, Evalue=1e-135, Organism=Escherichia coli, GI1789065, Length=330, Percent_Identity=27.5757575757576, Blast_Score=123, Evalue=4e-29, Organism=Escherichia coli, GI1788892, Length=278, Percent_Identity=28.7769784172662, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17559934, Length=422, Percent_Identity=23.696682464455, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI281359715, Length=277, Percent_Identity=28.158844765343, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI281359713, Length=277, Percent_Identity=28.158844765343, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI24639250, Length=277, Percent_Identity=28.158844765343, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI18543267, Length=277, Percent_Identity=28.158844765343, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI24639252, Length=277, Percent_Identity=28.158844765343, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI24639257, Length=361, Percent_Identity=26.0387811634349, Blast_Score=88, Evalue=3e-17, Organism=Drosophila melanogaster, GI24585130, Length=272, Percent_Identity=23.5294117647059, Blast_Score=84, Evalue=4e-16, Organism=Drosophila melanogaster, GI28573993, Length=202, Percent_Identity=29.7029702970297, Blast_Score=70, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581020, Length=202, Percent_Identity=29.7029702970297, Blast_Score=70, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007419 - InterPro: IPR013027 - InterPro: IPR005117 - InterPro: IPR012744 - InterPro: IPR017121 - InterPro: IPR006067 - InterPro: IPR006066 - InterPro: IPR001327 [H]
Pfam domain/function: PF04324 Fer2_BFD; PF01077 NIR_SIR; PF03460 NIR_SIR_ferr; PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.7.1.4 [H]
Molecular weight: Translated: 89675; Mature: 89675
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: PS00365 NIR_SIR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPTSFSQKDQPAQARERLVVIGNGMAGCRAVEEILARDPARFDVTIFGAEPRVNYNRI CCCCCCCCCCCCCHHHHCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEE MLSPVLAGEKAFDDIVINDASWYADNGITLVSGDPVVSIDRETQTVVARSGRVEPYDRLL EEEHHHCCCHHCCCEEEECCCEECCCCEEEEECCEEEEECCCHHHHHHHCCCCCCCCEEE IATGSDPFIIPVPGHDLPGVVTFRDLDDVERMLAASERGGSAVVIGGGLLGLEAAHGLAL EEECCCCEEEECCCCCCCCEEEECCHHHHHHHHHHCCCCCCEEEEECCEEHHHHHCCEEE RGMKVTVVHLMPTLMERQLDEAAGYLLRSELERRGQTIVTGGDTAEILGRDGHVSGVKLK CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCCCCCEEEC DGREFAADIVVMAVGIRPATGLARAAGLDVERGILVDDHMMTSDPAVMAVGECVQHRGQC CCHHHHHEEEEEEECCCCCCCHHHHHCCCCCCCEEEECCEECCCCHHHHHHHHHHHCCCE YGLVAPLWDMCRALADCVTGNPSGYEGSVTSTKLKVSGIDLFSAGDFSGGEGAEDIVMRD EEEHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECEEEEECCCCCCCCCCHHHHHHH ASRGIYKRVIVREDRVVGAVLYGDTGDGSWYFDLLKKGEDISEIREALIFGQAFAAGGAL HCCCHHHHHHEECCCEEEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC ADPNAAVAALSDDAEICGCNGVSKGKVVETIKGGACSLDAVRSQCKASASCGSCTGLVES CCCCCEEEEECCCCCEECCCCCCCCCEEHECCCCCCCHHHHHHHHHCCCCCCHHHHHHHH LLRLTLGGEVEAGPKTMCKCTSFTHSDVRRLIVEKNLRLIPQVMQELGWSTPDGCASCRP HHHHHCCCCCCCCCHHHHEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHCCC ALNYYLLCAWPGEYEDDQQSRFVNERMHANIQKDGTYSVVPRMWGGLTNPRELRAIADVV CCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHCCCCCHHHHHHHHHHH EKYNAPMVKVTGGQRLDIFGIRKEDLPAVWADLNAAGMVSGHAYGKSLRTVKTCVGSEWC HHHCCCEEEECCCCEEEEEECCCCCCCHHHHCCCCCCEECCHHHHHHHHHHHHHHCCHHH RFGTQDSTGLGVKLEQMTWGSWMPHKFKIAVSGCPRNCAEATIKDFGVVCVDSGYELHVG HCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHCCEEEECCCCEEEEC GNGGIKVRATDLLCRVATEAEAMEVCAAFIQLYREQAWYLERTAPWIERVGLEHVKAALF CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHC DDPEAVATLAARFRHSQQFMQDDPWAKRARGADAELHQHLAEVRPFQMENA CCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MNAPTSFSQKDQPAQARERLVVIGNGMAGCRAVEEILARDPARFDVTIFGAEPRVNYNRI CCCCCCCCCCCCCHHHHCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEE MLSPVLAGEKAFDDIVINDASWYADNGITLVSGDPVVSIDRETQTVVARSGRVEPYDRLL EEEHHHCCCHHCCCEEEECCCEECCCCEEEEECCEEEEECCCHHHHHHHCCCCCCCCEEE IATGSDPFIIPVPGHDLPGVVTFRDLDDVERMLAASERGGSAVVIGGGLLGLEAAHGLAL EEECCCCEEEECCCCCCCCEEEECCHHHHHHHHHHCCCCCCEEEEECCEEHHHHHCCEEE RGMKVTVVHLMPTLMERQLDEAAGYLLRSELERRGQTIVTGGDTAEILGRDGHVSGVKLK CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCCCCCEEEC DGREFAADIVVMAVGIRPATGLARAAGLDVERGILVDDHMMTSDPAVMAVGECVQHRGQC CCHHHHHEEEEEEECCCCCCCHHHHHCCCCCCCEEEECCEECCCCHHHHHHHHHHHCCCE YGLVAPLWDMCRALADCVTGNPSGYEGSVTSTKLKVSGIDLFSAGDFSGGEGAEDIVMRD EEEHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECEEEEECCCCCCCCCCHHHHHHH ASRGIYKRVIVREDRVVGAVLYGDTGDGSWYFDLLKKGEDISEIREALIFGQAFAAGGAL HCCCHHHHHHEECCCEEEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC ADPNAAVAALSDDAEICGCNGVSKGKVVETIKGGACSLDAVRSQCKASASCGSCTGLVES CCCCCEEEEECCCCCEECCCCCCCCCEEHECCCCCCCHHHHHHHHHCCCCCCHHHHHHHH LLRLTLGGEVEAGPKTMCKCTSFTHSDVRRLIVEKNLRLIPQVMQELGWSTPDGCASCRP HHHHHCCCCCCCCCHHHHEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHCCC ALNYYLLCAWPGEYEDDQQSRFVNERMHANIQKDGTYSVVPRMWGGLTNPRELRAIADVV CCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHCCCCCHHHHHHHHHHH EKYNAPMVKVTGGQRLDIFGIRKEDLPAVWADLNAAGMVSGHAYGKSLRTVKTCVGSEWC HHHCCCEEEECCCCEEEEEECCCCCCCHHHHCCCCCCEECCHHHHHHHHHHHHHHCCHHH RFGTQDSTGLGVKLEQMTWGSWMPHKFKIAVSGCPRNCAEATIKDFGVVCVDSGYELHVG HCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHCCEEEECCCCEEEEC GNGGIKVRATDLLCRVATEAEAMEVCAAFIQLYREQAWYLERTAPWIERVGLEHVKAALF CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHC DDPEAVATLAARFRHSQQFMQDDPWAKRARGADAELHQHLAEVRPFQMENA CCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7868621; 8969502; 9384377 [H]