| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is gsiC [H]
Identifier: 87200956
GI number: 87200956
Start: 3161351
End: 3162340
Strand: Reverse
Name: gsiC [H]
Synonym: Saro_2944
Alternate gene names: 87200956
Gene position: 3162340-3161351 (Counterclockwise)
Preceding gene: 87200957
Following gene: 87200955
Centisome position: 88.79
GC content: 64.55
Gene sequence:
>990_bases ATGGCTGGTTCGGCTACATCCGCGCCGAAATCCGCTCTCGTCGGCGTGCTGCCGCTGATCGGCAAGCGCATCGGTTCTGC GTTGCTTACGCTGCTGCTGGTCTCGGCCGTGGTCTTCGCCATTTCGGGGCTCTTGCCGGGCGATGCCGCGCAGGAGACGC TGGGCCAAAGCGCCACGCCCGAACAGGTTGCCGCGCTGCGCCACGAAATGGGCCTCGATCGCCCCGCGCTGACCAGATAC GTGGACTGGCTCGGGGGCATCCTGCAAGGCGATCCAGGCCAGTCGCTCGTCGCGAACATGCCCGTGCGCGAGGTGATTTC GGAACGCCTGCCCAATTCGCTGATGCTGGCGGGCTTCACCGCCCTCGTATCGGTGCCGTTGGCGCTGGCGATCGGCGTTG CTTCGGCGATCAATCGTGGCGGACGGCTGGATCGCGTACTCAACGTGATGACGCTGTCCGCCGTCGCGGTGCCGGAATTT CTCGTTGCGACCCTCGGTGTGCTGGTGTTTTCGGTCAAGCTGCTGTGGCTGCCCTCGATCGCACTGGTAAGCGAGGAAGC CAGCCTGTGGGACACGGTGCGTTCCTGCGCCTTGCCGGTGCTGTCGCTCTCGGTCGTGGTGATTGCACAGATGGCGCGGA TGACGCGCGCGGCGGTCGCCGACCAGCTTGACCGTCCCTACGTCGAGATGGCGCGCTTGAAGGGCGTGCCGTTCCGCCGC CTCGTGCTGTTTCACGTCCTGCCAAATGCCGTTGGCCCCATCGTCAACGCCGTTGCCCTTTCGCTATCCTACCTGCTGGG CGGGGCGATAATCGTCGAGACGATCTTCAATTTCCCCGGCCTTGCCAGTCTCATGGTCAATGCCGTTACCAGCCGCGACA TGCCGCTGCTCCAGGCCTGCGCAATGATTTTCTGTGCGATCTATCTTGCGCTGGTGCTGCTGGCCGACGTCGTGGCGATC CTCGCCAATCCAAGGCTGCGTGCGCAATGA
Upstream 100 bases:
>100_bases TGCTCGACGGCCACGACCGGCGACTGAAAGGGATGTCTGCAATCCCCCTCGGCGGCCTGATGGGCTATCGCTTTGCCGAA TACGCCTGGTGGGACGCGTG
Downstream 100 bases:
>100_bases GCCGGTTTACATCCTTCTTCCGGGACCTGCCGCTTTCCGGCCGTATCGGCCTGGGCCTGGTGCTGTTCTGGCTGGCGGTG GCGCTGGTGGGACCGGCATT
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MAGSATSAPKSALVGVLPLIGKRIGSALLTLLLVSAVVFAISGLLPGDAAQETLGQSATPEQVAALRHEMGLDRPALTRY VDWLGGILQGDPGQSLVANMPVREVISERLPNSLMLAGFTALVSVPLALAIGVASAINRGGRLDRVLNVMTLSAVAVPEF LVATLGVLVFSVKLLWLPSIALVSEEASLWDTVRSCALPVLSLSVVVIAQMARMTRAAVADQLDRPYVEMARLKGVPFRR LVLFHVLPNAVGPIVNAVALSLSYLLGGAIIVETIFNFPGLASLMVNAVTSRDMPLLQACAMIFCAIYLALVLLADVVAI LANPRLRAQ
Sequences:
>Translated_329_residues MAGSATSAPKSALVGVLPLIGKRIGSALLTLLLVSAVVFAISGLLPGDAAQETLGQSATPEQVAALRHEMGLDRPALTRY VDWLGGILQGDPGQSLVANMPVREVISERLPNSLMLAGFTALVSVPLALAIGVASAINRGGRLDRVLNVMTLSAVAVPEF LVATLGVLVFSVKLLWLPSIALVSEEASLWDTVRSCALPVLSLSVVVIAQMARMTRAAVADQLDRPYVEMARLKGVPFRR LVLFHVLPNAVGPIVNAVALSLSYLLGGAIIVETIFNFPGLASLMVNAVTSRDMPLLQACAMIFCAIYLALVLLADVVAI LANPRLRAQ >Mature_328_residues AGSATSAPKSALVGVLPLIGKRIGSALLTLLLVSAVVFAISGLLPGDAAQETLGQSATPEQVAALRHEMGLDRPALTRYV DWLGGILQGDPGQSLVANMPVREVISERLPNSLMLAGFTALVSVPLALAIGVASAINRGGRLDRVLNVMTLSAVAVPEFL VATLGVLVFSVKLLWLPSIALVSEEASLWDTVRSCALPVLSLSVVVIAQMARMTRAAVADQLDRPYVEMARLKGVPFRRL VLFHVLPNAVGPIVNAVALSLSYLLGGAIIVETIFNFPGLASLMVNAVTSRDMPLLQACAMIFCAIYLALVLLADVVAIL ANPRLRAQ
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787053, Length=308, Percent_Identity=35.0649350649351, Blast_Score=184, Evalue=8e-48, Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=27.810650887574, Blast_Score=155, Evalue=2e-39, Organism=Escherichia coli, GI1789888, Length=302, Percent_Identity=31.4569536423841, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=27.3015873015873, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1787761, Length=304, Percent_Identity=27.9605263157895, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1788504, Length=324, Percent_Identity=25.9259259259259, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=27.5735294117647, Blast_Score=108, Evalue=4e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 34569; Mature: 34438
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGSATSAPKSALVGVLPLIGKRIGSALLTLLLVSAVVFAISGLLPGDAAQETLGQSATP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCH EQVAALRHEMGLDRPALTRYVDWLGGILQGDPGQSLVANMPVREVISERLPNSLMLAGFT HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHCCCHHHHHHHH ALVSVPLALAIGVASAINRGGRLDRVLNVMTLSAVAVPEFLVATLGVLVFSVKLLWLPSI HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALVSEEASLWDTVRSCALPVLSLSVVVIAQMARMTRAAVADQLDRPYVEMARLKGVPFRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHH LVLFHVLPNAVGPIVNAVALSLSYLLGGAIIVETIFNFPGLASLMVNAVTSRDMPLLQAC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH AMIFCAIYLALVLLADVVAILANPRLRAQ HHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure AGSATSAPKSALVGVLPLIGKRIGSALLTLLLVSAVVFAISGLLPGDAAQETLGQSATP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCH EQVAALRHEMGLDRPALTRYVDWLGGILQGDPGQSLVANMPVREVISERLPNSLMLAGFT HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHCCCHHHHHHHH ALVSVPLALAIGVASAINRGGRLDRVLNVMTLSAVAVPEFLVATLGVLVFSVKLLWLPSI HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALVSEEASLWDTVRSCALPVLSLSVVVIAQMARMTRAAVADQLDRPYVEMARLKGVPFRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHH LVLFHVLPNAVGPIVNAVALSLSYLLGGAIIVETIFNFPGLASLMVNAVTSRDMPLLQAC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH AMIFCAIYLALVLLADVVAILANPRLRAQ HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA