| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is yhbJ [C]
Identifier: 87200916
GI number: 87200916
Start: 3121064
End: 3121981
Strand: Reverse
Name: yhbJ [C]
Synonym: Saro_2904
Alternate gene names: 87200916
Gene position: 3121981-3121064 (Counterclockwise)
Preceding gene: 87200917
Following gene: 87200915
Centisome position: 87.66
GC content: 64.6
Gene sequence:
>918_bases ATGTCCGCGGATTCGGCACCCCAGCGAATTCTTCTCGTCACCGGCCTGCTTGGCGCGGGCAAGACGACTGCGCTGCGCAC GCTCGAGGACATGGGGTGGGAGGCGATCGACAATTTTCCGATCCGCCTGCTCGACCGCCTGCTCGAGACAGAGCCCGGCT CGGCCCGGATGGAGCCGGGGGCGCCGATGGCCATCGGCTTCGATACCCGCACGCGCGGCTTCGATCCTTCGCGCACGATC GAACTGGTCAAGAAGCTGTCGCAGCGCAGCGATCTCCAGATCACGACGCTGTTCCTCGATTGCGCGGGCACCGAGCTTGA GCGGCGCTATAACGAGACCCGCCGTCGCCATCCGATGAGCGAGGACAAGCCGGCGGCGACGGGCATCGCGGCTGAGCGCG AACTGCTTGAACCGCTGCGACGCTGGGCGGACGTGGTGATCACTACAACCAGCTTCACCACCAACGACCTCCAGCAGGCG ATTCGCGATCAGTTCGGCGGCGAGATCGCTACTCCGACCACGATCACGATCAGCAGCTTCGGCTTCTCGCGCGGAATGCC CCCGCTGGCCGACCTCGTGTTCGACATGCGTTTCCTCGCCAACCCGCACTGGGTGGACGACCTGCGTCCCCAGACAGGGC GGGACAAGGCAGTGGGCGAATATATCCGCAAGGACCCGGCGTTCGACGAGGCATTCGAGCGGATCCGCGATCTCCTGCTG CTCCTGCTTCCCCGATACCAGGAACAGGGCAAGGCCTACGTCCATATCGCGTTCGGCTGTACCGGCGGGCGTCACCGTTC CGTGTTCATGGCCGAGCAGATCGCTTCCGCCTTGCGCGAAGCGGGATTTTCTCCCACATTATTGCATCGCAACCTGTCGT CGCGGGCAGCCGACCTGCTCGAAGGCGTCAAGGGATAA
Upstream 100 bases:
>100_bases GAAATGGCGCTGTCGGTCCATGGGTTGACGACCTGCTGACGGTGGACAGGTCGTCCTCGCGGACTTTCCAAGCGCGCCAC GAAGGCGCAAAGCGATAGCC
Downstream 100 bases:
>100_bases CGGAATGGGCGGGGCAGTACTGGAAGTCATGCATTTCGATACCCAGTCGTCTTGCGTCCCCCGTATTCACGCCAAGCCTG CGTTAAGCCGCGCTTCGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MSADSAPQRILLVTGLLGAGKTTALRTLEDMGWEAIDNFPIRLLDRLLETEPGSARMEPGAPMAIGFDTRTRGFDPSRTI ELVKKLSQRSDLQITTLFLDCAGTELERRYNETRRRHPMSEDKPAATGIAAERELLEPLRRWADVVITTTSFTTNDLQQA IRDQFGGEIATPTTITISSFGFSRGMPPLADLVFDMRFLANPHWVDDLRPQTGRDKAVGEYIRKDPAFDEAFERIRDLLL LLLPRYQEQGKAYVHIAFGCTGGRHRSVFMAEQIASALREAGFSPTLLHRNLSSRAADLLEGVKG
Sequences:
>Translated_305_residues MSADSAPQRILLVTGLLGAGKTTALRTLEDMGWEAIDNFPIRLLDRLLETEPGSARMEPGAPMAIGFDTRTRGFDPSRTI ELVKKLSQRSDLQITTLFLDCAGTELERRYNETRRRHPMSEDKPAATGIAAERELLEPLRRWADVVITTTSFTTNDLQQA IRDQFGGEIATPTTITISSFGFSRGMPPLADLVFDMRFLANPHWVDDLRPQTGRDKAVGEYIRKDPAFDEAFERIRDLLL LLLPRYQEQGKAYVHIAFGCTGGRHRSVFMAEQIASALREAGFSPTLLHRNLSSRAADLLEGVKG >Mature_304_residues SADSAPQRILLVTGLLGAGKTTALRTLEDMGWEAIDNFPIRLLDRLLETEPGSARMEPGAPMAIGFDTRTRGFDPSRTIE LVKKLSQRSDLQITTLFLDCAGTELERRYNETRRRHPMSEDKPAATGIAAERELLEPLRRWADVVITTTSFTTNDLQQAI RDQFGGEIATPTTITISSFGFSRGMPPLADLVFDMRFLANPHWVDDLRPQTGRDKAVGEYIRKDPAFDEAFERIRDLLLL LLPRYQEQGKAYVHIAFGCTGGRHRSVFMAEQIASALREAGFSPTLLHRNLSSRAADLLEGVKG
Specific function: Displays ATPase and GTPase activities
COG id: COG1660
COG function: function code R; Predicted P-loop-containing kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0042 family
Homologues:
Organism=Escherichia coli, GI1789598, Length=287, Percent_Identity=38.3275261324042, Blast_Score=189, Evalue=2e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2904_NOVAD (Q2G484)
Other databases:
- EMBL: CP000248 - RefSeq: YP_498173.1 - ProteinModelPortal: Q2G484 - STRING: Q2G484 - GeneID: 3915543 - GenomeReviews: CP000248_GR - KEGG: nar:Saro_2904 - NMPDR: fig|48935.1.peg.3537 - eggNOG: COG1660 - HOGENOM: HBG289732 - OMA: GIGCTGG - PhylomeDB: Q2G484 - ProtClustDB: PRK05416 - BioCyc: NARO279238:SARO_2904-MONOMER - HAMAP: MF_00636 - InterPro: IPR005337 - PIRSF: PIRSF005052
Pfam domain/function: PF03668 ATP_bind_2
EC number: NA
Molecular weight: Translated: 34047; Mature: 33916
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSADSAPQRILLVTGLLGAGKTTALRTLEDMGWEAIDNFPIRLLDRLLETEPGSARMEPG CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCCCCCCCC APMAIGFDTRTRGFDPSRTIELVKKLSQRSDLQITTLFLDCAGTELERRYNETRRRHPMS CCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC EDKPAATGIAAERELLEPLRRWADVVITTTSFTTNDLQQAIRDQFGGEIATPTTITISSF CCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECC GFSRGMPPLADLVFDMRFLANPHWVDDLRPQTGRDKAVGEYIRKDPAFDEAFERIRDLLL CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH LLLPRYQEQGKAYVHIAFGCTGGRHRSVFMAEQIASALREAGFSPTLLHRNLSSRAADLL HHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH EGVKG HHCCC >Mature Secondary Structure SADSAPQRILLVTGLLGAGKTTALRTLEDMGWEAIDNFPIRLLDRLLETEPGSARMEPG CCCCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCCCCCCCC APMAIGFDTRTRGFDPSRTIELVKKLSQRSDLQITTLFLDCAGTELERRYNETRRRHPMS CCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC EDKPAATGIAAERELLEPLRRWADVVITTTSFTTNDLQQAIRDQFGGEIATPTTITISSF CCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECC GFSRGMPPLADLVFDMRFLANPHWVDDLRPQTGRDKAVGEYIRKDPAFDEAFERIRDLLL CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH LLLPRYQEQGKAYVHIAFGCTGGRHRSVFMAEQIASALREAGFSPTLLHRNLSSRAADLL HHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH EGVKG HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA