Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

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The map label for this gene is yhbJ [C]

Identifier: 87200916

GI number: 87200916

Start: 3121064

End: 3121981

Strand: Reverse

Name: yhbJ [C]

Synonym: Saro_2904

Alternate gene names: 87200916

Gene position: 3121981-3121064 (Counterclockwise)

Preceding gene: 87200917

Following gene: 87200915

Centisome position: 87.66

GC content: 64.6

Gene sequence:

>918_bases
ATGTCCGCGGATTCGGCACCCCAGCGAATTCTTCTCGTCACCGGCCTGCTTGGCGCGGGCAAGACGACTGCGCTGCGCAC
GCTCGAGGACATGGGGTGGGAGGCGATCGACAATTTTCCGATCCGCCTGCTCGACCGCCTGCTCGAGACAGAGCCCGGCT
CGGCCCGGATGGAGCCGGGGGCGCCGATGGCCATCGGCTTCGATACCCGCACGCGCGGCTTCGATCCTTCGCGCACGATC
GAACTGGTCAAGAAGCTGTCGCAGCGCAGCGATCTCCAGATCACGACGCTGTTCCTCGATTGCGCGGGCACCGAGCTTGA
GCGGCGCTATAACGAGACCCGCCGTCGCCATCCGATGAGCGAGGACAAGCCGGCGGCGACGGGCATCGCGGCTGAGCGCG
AACTGCTTGAACCGCTGCGACGCTGGGCGGACGTGGTGATCACTACAACCAGCTTCACCACCAACGACCTCCAGCAGGCG
ATTCGCGATCAGTTCGGCGGCGAGATCGCTACTCCGACCACGATCACGATCAGCAGCTTCGGCTTCTCGCGCGGAATGCC
CCCGCTGGCCGACCTCGTGTTCGACATGCGTTTCCTCGCCAACCCGCACTGGGTGGACGACCTGCGTCCCCAGACAGGGC
GGGACAAGGCAGTGGGCGAATATATCCGCAAGGACCCGGCGTTCGACGAGGCATTCGAGCGGATCCGCGATCTCCTGCTG
CTCCTGCTTCCCCGATACCAGGAACAGGGCAAGGCCTACGTCCATATCGCGTTCGGCTGTACCGGCGGGCGTCACCGTTC
CGTGTTCATGGCCGAGCAGATCGCTTCCGCCTTGCGCGAAGCGGGATTTTCTCCCACATTATTGCATCGCAACCTGTCGT
CGCGGGCAGCCGACCTGCTCGAAGGCGTCAAGGGATAA

Upstream 100 bases:

>100_bases
GAAATGGCGCTGTCGGTCCATGGGTTGACGACCTGCTGACGGTGGACAGGTCGTCCTCGCGGACTTTCCAAGCGCGCCAC
GAAGGCGCAAAGCGATAGCC

Downstream 100 bases:

>100_bases
CGGAATGGGCGGGGCAGTACTGGAAGTCATGCATTTCGATACCCAGTCGTCTTGCGTCCCCCGTATTCACGCCAAGCCTG
CGTTAAGCCGCGCTTCGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSADSAPQRILLVTGLLGAGKTTALRTLEDMGWEAIDNFPIRLLDRLLETEPGSARMEPGAPMAIGFDTRTRGFDPSRTI
ELVKKLSQRSDLQITTLFLDCAGTELERRYNETRRRHPMSEDKPAATGIAAERELLEPLRRWADVVITTTSFTTNDLQQA
IRDQFGGEIATPTTITISSFGFSRGMPPLADLVFDMRFLANPHWVDDLRPQTGRDKAVGEYIRKDPAFDEAFERIRDLLL
LLLPRYQEQGKAYVHIAFGCTGGRHRSVFMAEQIASALREAGFSPTLLHRNLSSRAADLLEGVKG

Sequences:

>Translated_305_residues
MSADSAPQRILLVTGLLGAGKTTALRTLEDMGWEAIDNFPIRLLDRLLETEPGSARMEPGAPMAIGFDTRTRGFDPSRTI
ELVKKLSQRSDLQITTLFLDCAGTELERRYNETRRRHPMSEDKPAATGIAAERELLEPLRRWADVVITTTSFTTNDLQQA
IRDQFGGEIATPTTITISSFGFSRGMPPLADLVFDMRFLANPHWVDDLRPQTGRDKAVGEYIRKDPAFDEAFERIRDLLL
LLLPRYQEQGKAYVHIAFGCTGGRHRSVFMAEQIASALREAGFSPTLLHRNLSSRAADLLEGVKG
>Mature_304_residues
SADSAPQRILLVTGLLGAGKTTALRTLEDMGWEAIDNFPIRLLDRLLETEPGSARMEPGAPMAIGFDTRTRGFDPSRTIE
LVKKLSQRSDLQITTLFLDCAGTELERRYNETRRRHPMSEDKPAATGIAAERELLEPLRRWADVVITTTSFTTNDLQQAI
RDQFGGEIATPTTITISSFGFSRGMPPLADLVFDMRFLANPHWVDDLRPQTGRDKAVGEYIRKDPAFDEAFERIRDLLLL
LLPRYQEQGKAYVHIAFGCTGGRHRSVFMAEQIASALREAGFSPTLLHRNLSSRAADLLEGVKG

Specific function: Displays ATPase and GTPase activities

COG id: COG1660

COG function: function code R; Predicted P-loop-containing kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0042 family

Homologues:

Organism=Escherichia coli, GI1789598, Length=287, Percent_Identity=38.3275261324042, Blast_Score=189, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2904_NOVAD (Q2G484)

Other databases:

- EMBL:   CP000248
- RefSeq:   YP_498173.1
- ProteinModelPortal:   Q2G484
- STRING:   Q2G484
- GeneID:   3915543
- GenomeReviews:   CP000248_GR
- KEGG:   nar:Saro_2904
- NMPDR:   fig|48935.1.peg.3537
- eggNOG:   COG1660
- HOGENOM:   HBG289732
- OMA:   GIGCTGG
- PhylomeDB:   Q2G484
- ProtClustDB:   PRK05416
- BioCyc:   NARO279238:SARO_2904-MONOMER
- HAMAP:   MF_00636
- InterPro:   IPR005337
- PIRSF:   PIRSF005052

Pfam domain/function: PF03668 ATP_bind_2

EC number: NA

Molecular weight: Translated: 34047; Mature: 33916

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADSAPQRILLVTGLLGAGKTTALRTLEDMGWEAIDNFPIRLLDRLLETEPGSARMEPG
CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCCCCCCCC
APMAIGFDTRTRGFDPSRTIELVKKLSQRSDLQITTLFLDCAGTELERRYNETRRRHPMS
CCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC
EDKPAATGIAAERELLEPLRRWADVVITTTSFTTNDLQQAIRDQFGGEIATPTTITISSF
CCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECC
GFSRGMPPLADLVFDMRFLANPHWVDDLRPQTGRDKAVGEYIRKDPAFDEAFERIRDLLL
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
LLLPRYQEQGKAYVHIAFGCTGGRHRSVFMAEQIASALREAGFSPTLLHRNLSSRAADLL
HHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
EGVKG
HHCCC
>Mature Secondary Structure 
SADSAPQRILLVTGLLGAGKTTALRTLEDMGWEAIDNFPIRLLDRLLETEPGSARMEPG
CCCCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCCCCCCCC
APMAIGFDTRTRGFDPSRTIELVKKLSQRSDLQITTLFLDCAGTELERRYNETRRRHPMS
CCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC
EDKPAATGIAAERELLEPLRRWADVVITTTSFTTNDLQQAIRDQFGGEIATPTTITISSF
CCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECC
GFSRGMPPLADLVFDMRFLANPHWVDDLRPQTGRDKAVGEYIRKDPAFDEAFERIRDLLL
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
LLLPRYQEQGKAYVHIAFGCTGGRHRSVFMAEQIASALREAGFSPTLLHRNLSSRAADLL
HHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
EGVKG
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA