| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200905
Identifier: 87200905
GI number: 87200905
Start: 3111968
End: 3113083
Strand: Reverse
Name: 87200905
Synonym: Saro_2892
Alternate gene names: NA
Gene position: 3113083-3111968 (Counterclockwise)
Preceding gene: 87200906
Following gene: 87200903
Centisome position: 87.41
GC content: 66.67
Gene sequence:
>1116_bases ATGACCCAGCTTCGCGGCCAGCGCATCGTGTCCCAGCTCGATGCCGACGGCACCCTCGCCGTCTCGCTCCAGGACTTCGA CGTGCCCGAACCCACCGGCAGCGAGGTCTTGATCCGGGTCGAAGCGACGCCGATCAACCCCTCGGACCTCGGCCTTCTGT TCGGCCCGGCCGATGTGGTCGGTGCGGAGTTTTCACCCGGTCGCGTTGTCGCCCGGATGCCCGAGCCGGCGGTGCGCGCC ATGTCGGCGCGCCATGGCATGGCGATGCCGGTCGGCAACGAGGGCGCCGGCACGGTGATCGCGGCGGGCGAGGCGCCAGA GGCGCAGGCCCTGCTCGGCAAGCGCGTGACCTGCTTCCCGGGCGGCATGTACGCGACCCATGCAATTGCCGATGCGCGCA TGTGCCTTGAACTGGCCGGCGGCATCACGGCCGAGCAGGGCGCTTCGACCTTCGTCAACCCGCTGACGGCGCTGAGCTTT ACCGAAACGATGCGCTATCATGGTCACTCGGCCTTGGTGCACACGGCGGCGGCATCGAACCTCGGCCAGATGCTCGTGAG GATCTGCCACGCCGATGGCATTCCGCTGGTCAACGTCGTGCGCAACGAGGCGCAGGTGGCGATCCTCAAGGGCATCGGCG CCGAACATGTGGTGGATAGCTCGAAGGATACGTTCCTCGACGATCTCGCCGCCGCGCTGGATGCGACGAAGGCGACCATG GCATTCGATGCGATCGGGGGCGGCAAGCTCGTCAGCCAGATCCTGACCACGATGGAGCAGGTCGCGAACAAGGGCGCGGC CTATAGTCGCTACGGTTCGAACAGCCCGAAGCATGCTTTCATCTATGGCGCGCTCGACCTGTCGCCGACGATCCTGACGC GCAACTTCGGTTTCGTCTGGGACGTTTCGGGCTGGCTGCTGACGCCCTGGATGAGCAAGCTCGGGCCGGAGATCGTCGAC AAGATGCGCCGCCGCGTCATGGCCGAACTGACCACGACCTTCGCAAGCCGCTACAAGGCGCGCGTCACGCTGGAACAGGC CCTGACCCGCGACGCGGCTTTGGACTACAACGCGCGGCGCACCGGCGAGAAGTACCTGATCACGCCCAACGGCTGA
Upstream 100 bases:
>100_bases GGCGAGGCGCTGGCCGCAAAAGACCGTAGCAGATTAGGACTTAACGCGCCCCCGGAAGGCCTGTACTTCGTCTCCGCTCA ATATCCCGGAGAATGATCCC
Downstream 100 bases:
>100_bases GCCGACGAAGAAAGGCCCCCGCTCTCGCAGGGGCCTTTTTCCATTTCAGCGCCGGCGGTCTCAACCCCGGTGCGCGACGC TTTCCGGCAGATCCTTGCCG
Product: putative NADH oxidoreductase
Products: NA
Alternate protein names: Alcohol Dehydrogenase; Alcohol Dehydrogenase GroES Domain Protein; Alcohol Dehydrogenase GroES-Like Protein; NADPHQuinone Reductase; Alcohol Dehydrogenase GroES-Like Domain Family; Zn-Dependent; Alcohol Dehydrogenase GroES Domain-Containing Protein; NADH Oxidoreductas; Zn-Dependent Alcohol Dehydrogenase; Alcohol Dehydrogenase-Like Protein; Zn-Dependent Oxidoreductase; NADH Oxidoreductase-Like
Number of amino acids: Translated: 371; Mature: 370
Protein sequence:
>371_residues MTQLRGQRIVSQLDADGTLAVSLQDFDVPEPTGSEVLIRVEATPINPSDLGLLFGPADVVGAEFSPGRVVARMPEPAVRA MSARHGMAMPVGNEGAGTVIAAGEAPEAQALLGKRVTCFPGGMYATHAIADARMCLELAGGITAEQGASTFVNPLTALSF TETMRYHGHSALVHTAAASNLGQMLVRICHADGIPLVNVVRNEAQVAILKGIGAEHVVDSSKDTFLDDLAAALDATKATM AFDAIGGGKLVSQILTTMEQVANKGAAYSRYGSNSPKHAFIYGALDLSPTILTRNFGFVWDVSGWLLTPWMSKLGPEIVD KMRRRVMAELTTTFASRYKARVTLEQALTRDAALDYNARRTGEKYLITPNG
Sequences:
>Translated_371_residues MTQLRGQRIVSQLDADGTLAVSLQDFDVPEPTGSEVLIRVEATPINPSDLGLLFGPADVVGAEFSPGRVVARMPEPAVRA MSARHGMAMPVGNEGAGTVIAAGEAPEAQALLGKRVTCFPGGMYATHAIADARMCLELAGGITAEQGASTFVNPLTALSF TETMRYHGHSALVHTAAASNLGQMLVRICHADGIPLVNVVRNEAQVAILKGIGAEHVVDSSKDTFLDDLAAALDATKATM AFDAIGGGKLVSQILTTMEQVANKGAAYSRYGSNSPKHAFIYGALDLSPTILTRNFGFVWDVSGWLLTPWMSKLGPEIVD KMRRRVMAELTTTFASRYKARVTLEQALTRDAALDYNARRTGEKYLITPNG >Mature_370_residues TQLRGQRIVSQLDADGTLAVSLQDFDVPEPTGSEVLIRVEATPINPSDLGLLFGPADVVGAEFSPGRVVARMPEPAVRAM SARHGMAMPVGNEGAGTVIAAGEAPEAQALLGKRVTCFPGGMYATHAIADARMCLELAGGITAEQGASTFVNPLTALSFT ETMRYHGHSALVHTAAASNLGQMLVRICHADGIPLVNVVRNEAQVAILKGIGAEHVVDSSKDTFLDDLAAALDATKATMA FDAIGGGKLVSQILTTMEQVANKGAAYSRYGSNSPKHAFIYGALDLSPTILTRNFGFVWDVSGWLLTPWMSKLGPEIVDK MRRRVMAELTTTFASRYKARVTLEQALTRDAALDYNARRTGEKYLITPNG
Specific function: Unknown
COG id: COG0604
COG function: function code CR; NADPH:quinone reductase and related Zn-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39445; Mature: 39313
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQLRGQRIVSQLDADGTLAVSLQDFDVPEPTGSEVLIRVEATPINPSDLGLLFGPADVV CCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEECCHHHC GAEFSPGRVVARMPEPAVRAMSARHGMAMPVGNEGAGTVIAAGEAPEAQALLGKRVTCFP CCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCEEECC GGMYATHAIADARMCLELAGGITAEQGASTFVNPLTALSFTETMRYHGHSALVHTAAASN CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LGQMLVRICHADGIPLVNVVRNEAQVAILKGIGAEHVVDSSKDTFLDDLAAALDATKATM HHHHHHHHHHCCCCCHHHHHHCCHHEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHH AFDAIGGGKLVSQILTTMEQVANKGAAYSRYGSNSPKHAFIYGALDLSPTILTRNFGFVW HHHCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECCCCEEEECCCCEEE DVSGWLLTPWMSKLGPEIVDKMRRRVMAELTTTFASRYKARVTLEQALTRDAALDYNARR ECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCCCCC TGEKYLITPNG CCCEEEECCCC >Mature Secondary Structure TQLRGQRIVSQLDADGTLAVSLQDFDVPEPTGSEVLIRVEATPINPSDLGLLFGPADVV CCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEECCHHHC GAEFSPGRVVARMPEPAVRAMSARHGMAMPVGNEGAGTVIAAGEAPEAQALLGKRVTCFP CCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCEEECC GGMYATHAIADARMCLELAGGITAEQGASTFVNPLTALSFTETMRYHGHSALVHTAAASN CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LGQMLVRICHADGIPLVNVVRNEAQVAILKGIGAEHVVDSSKDTFLDDLAAALDATKATM HHHHHHHHHHCCCCCHHHHHHCCHHEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHH AFDAIGGGKLVSQILTTMEQVANKGAAYSRYGSNSPKHAFIYGALDLSPTILTRNFGFVW HHHCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECCCCEEEECCCCEEE DVSGWLLTPWMSKLGPEIVDKMRRRVMAELTTTFASRYKARVTLEQALTRDAALDYNARR ECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCCCCC TGEKYLITPNG CCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA