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The map label for this gene is ligF [H]

Identifier: 87200885

GI number: 87200885

Start: 3096062

End: 3096847

Strand: Reverse

Name: ligF [H]

Synonym: Saro_2872

Alternate gene names: 87200885

Gene position: 3096847-3096062 (Counterclockwise)

Preceding gene: 87200886

Following gene: 87200884

Centisome position: 86.95

GC content: 67.68

Gene sequence:

>786_bases
ATGAGCGCGCTTCTTTACCACGGCGAGCCCAACGGCGCGTCGCTCACCGTTCTTGCGGCGCTTGCGGAAACGGGCCTCGA
TATCGAGTGTCGCCGCATCGACCTCCTGGCGGGCGAGCGCCATTCGCTTCCCGGCATCGTCGATCCCGTCGCGCTCGACC
TGTCCATCGAAGGCGAAGGTCCGGTGCTGGTGATCGACGGGGAAGCAATGACCGAATCCGTCTTCCTCGCCCAATATCTG
GACGAGGCGGCGGGCGGGGTGGGGCTCCAGCCGACCGACGCCTATGCGCGCTGGGAAATGATGATGTGGTGCCGCCAGAT
CACCGAGCGCCTCTCGCCCGCCGCGGCCCTGCTCGGCAATCTCGCCACGTCGCAAAGCGCCATCGCCGCCATCCCGGCCG
AGGACTTCGCCATTCTCGCCGCACGGATCGTTTCCGACGACCTGCGCGAGCGGTGGCAGGCCCTGAACGACGATGCGGTG
AACGCCGCACAGGTCGCCGACAGCGAAACCAAGGTCGCCGCCGCCGTCGACCGCTGCGAGAAGCAGCTTGGCGATGGACG
CGAATGGCTGATGGGGACTTTCTCCATCGCCGATCTCGTCACCTACTCGTGGCTTGCCGGGATGGAGCCGCTCCGCCCTG
CCGCCTTTGCCGATGCACCGCTTGTCAAGGCCTGGCTTGCCCGCACCGCCGCGCGCCCTTGCGTGCAGGCGGCACTTGCC
CGGGCCACCATTTCCGAACCGCTCCGCGCCTGGGCGCCGGGGCCTGAAATCAACCGTTGGGGATAA

Upstream 100 bases:

>100_bases
TCAAGCGTGTCTACACCCGCGAAGCGGTGAAGAAGACCTGGGCCATGGGCAAGACGGACCTTGCCCATCGCTACGGCCTC
ATCATGGCGGAGATCGAGGG

Downstream 100 bases:

>100_bases
CCAATGCGCGCCATCGACTACTTTGACCGCGGACATGACCGCGACCCGCAGCGTCTCGCCATCGTCGACACCGAGACGGG
CCTCAAGCTGACGTTCGCCG

Product: glutathione S-transferase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MSALLYHGEPNGASLTVLAALAETGLDIECRRIDLLAGERHSLPGIVDPVALDLSIEGEGPVLVIDGEAMTESVFLAQYL
DEAAGGVGLQPTDAYARWEMMMWCRQITERLSPAAALLGNLATSQSAIAAIPAEDFAILAARIVSDDLRERWQALNDDAV
NAAQVADSETKVAAAVDRCEKQLGDGREWLMGTFSIADLVTYSWLAGMEPLRPAAFADAPLVKAWLARTAARPCVQAALA
RATISEPLRAWAPGPEINRWG

Sequences:

>Translated_261_residues
MSALLYHGEPNGASLTVLAALAETGLDIECRRIDLLAGERHSLPGIVDPVALDLSIEGEGPVLVIDGEAMTESVFLAQYL
DEAAGGVGLQPTDAYARWEMMMWCRQITERLSPAAALLGNLATSQSAIAAIPAEDFAILAARIVSDDLRERWQALNDDAV
NAAQVADSETKVAAAVDRCEKQLGDGREWLMGTFSIADLVTYSWLAGMEPLRPAAFADAPLVKAWLARTAARPCVQAALA
RATISEPLRAWAPGPEINRWG
>Mature_260_residues
SALLYHGEPNGASLTVLAALAETGLDIECRRIDLLAGERHSLPGIVDPVALDLSIEGEGPVLVIDGEAMTESVFLAQYLD
EAAGGVGLQPTDAYARWEMMMWCRQITERLSPAAALLGNLATSQSAIAAIPAEDFAILAARIVSDDLRERWQALNDDAVN
AAQVADSETKVAAAVDRCEKQLGDGREWLMGTFSIADLVTYSWLAGMEPLRPAAFADAPLVKAWLARTAARPCVQAALAR
ATISEPLRAWAPGPEINRWG

Specific function: Lignin degradation enzyme [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GST N-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010987
- InterPro:   IPR004045
- InterPro:   IPR017933
- InterPro:   IPR004046
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]

EC number: NA

Molecular weight: Translated: 27908; Mature: 27777

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALLYHGEPNGASLTVLAALAETGLDIECRRIDLLAGERHSLPGIVDPVALDLSIEGEG
CCCEEECCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCC
PVLVIDGEAMTESVFLAQYLDEAAGGVGLQPTDAYARWEMMMWCRQITERLSPAAALLGN
CEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LATSQSAIAAIPAEDFAILAARIVSDDLRERWQALNDDAVNAAQVADSETKVAAAVDRCE
HHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHH
KQLGDGREWLMGTFSIADLVTYSWLAGMEPLRPAAFADAPLVKAWLARTAARPCVQAALA
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHH
RATISEPLRAWAPGPEINRWG
HHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SALLYHGEPNGASLTVLAALAETGLDIECRRIDLLAGERHSLPGIVDPVALDLSIEGEG
CCEEECCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCC
PVLVIDGEAMTESVFLAQYLDEAAGGVGLQPTDAYARWEMMMWCRQITERLSPAAALLGN
CEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LATSQSAIAAIPAEDFAILAARIVSDDLRERWQALNDDAVNAAQVADSETKVAAAVDRCE
HHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHH
KQLGDGREWLMGTFSIADLVTYSWLAGMEPLRPAAFADAPLVKAWLARTAARPCVQAALA
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHH
RATISEPLRAWAPGPEINRWG
HHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1744051; 8495726 [H]