| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is adhA [H]
Identifier: 87200883
GI number: 87200883
Start: 3092342
End: 3094459
Strand: Reverse
Name: adhA [H]
Synonym: Saro_2870
Alternate gene names: 87200883
Gene position: 3094459-3092342 (Counterclockwise)
Preceding gene: 87200884
Following gene: 87200882
Centisome position: 86.88
GC content: 66.38
Gene sequence:
>2118_bases ATGCGATTGAAGGTCCTGGGACTTATGGCCGCACTGCTGCCGCTGGCGGCGTGCAACATCAAGAGCGAGGGCGGCGGGGA TGCCGTCGCCAACGCCGGCGTCACCGACGCCCTCATCGCCCAGGCGCCCGAAGGCGAATGGCTGAGCTATGGCCGCGATT ATGGCGAGCAGCGCTTCTCCCCGCTCACCCAGATCAATGACGGCAACGTCGGCCAGCTCGGTCTTGCCTGGTTCCATGAC CTCGAGACCGCGCGCGGGCAGGAAGCCACGCCGCTGATGCATGACGGCACGCTCTACATCTCGACCGCGTGGTCGATGGT GAAGGCGTTCGATGCCAAGACCGGCGCGCTCAAGTGGTCCTACGATCCCGAAGTCCCGCGCGAGACGCTGGTCCGCGCCT GCTGCGACGCGGTCAATCGCGGCGTCGCGCTCTATGGCGACAAGGTCTTCGTCGGCACGCTCGACGGTCGCCTCGTCGCG CTCGACCAGAAGACCGGAAAGGTCGTCTGGTCCAAGGTCGTCGTGCCCAACCAGGAGGACTACACCATCACCGGCGCCCC GCGCGTGGTGAAGGGCAAGGTTCTGATCGGTAGCGGCGGCTCGGAGTACAAGGCGCGCGGCTATATCGCCGCCTACGACG TCAACACCGGCAACGAAGTGTGGAAGTTCCACACCGTCCCCGGCAATCCAGCGGACGGGTTCGAGAACAAGGCGATGGAA AACGCCGCCCGCACGTGGGCTGGCGAATGGTGGAAGCTCGGCGGGGGCGGCACGGTGTGGGATTCCATCACCTATGATCC CGCCACCAACCTCGTCCTGTTCGGCACCGGCAATGCCGAGCCATGGAACCCGGCCGCAGCCGGGCGCGAGGGCGACAGCC TCTACACGTCCTCGATCGTCGCGGTGAATGCCGATACCGGCGACTATGTCTGGCATTTCCAGGAAACCCCGGAAGACCGC TGGGACTTCGACTCCGCGCAGCAGATCACGCTGGCCGACCTGACCATCGATGGGCAGCGGCGCCACGTGATCCTTCATGC GCCCAAGAACGGTCACGTCTATGTGCTCGACGCCAGGACCGGGCAGTTCCTGTCGGCAACGCCCTTCGTGATGGTCAACT GGGCGACCGGTATCGATCCCAAGACCGGCAAGGCCACCGTCAATCCCGAAGCCCGCTATGAAAAGACCGGCAAGCCCTTC GTCAGCCTGCCCGGTGCGGTCGGCGCACACTCCTGGCAGCCGCAGAGCTTCAGCCCGAAGACCGGCCTGCTCTACCTTCC GGTGAACAACGCGGCATTCCCCTATGCCGCCGCCAAGGACTGGAAGGCCACCGACATCGGCTTCCAGACCGGCCTCGACG GCTATGTCACCTCGATGCCCGCCGACGCCAAGGTCCAGGGCGCCGCGATGAAGGCGACCACCGGTACGCTCGTGGCGTGG GACCCGGTTGCGAAGAAGGCCGCGTGGAAGGTCGAACTGCCGAGCCCGTCGAACGGCGGCATTCTCTCGACCGCTGGCAA TCTCGTGTTCCAGGGCACCGCGGGCGGCGATTTCGTTGCCTACAACGCCGACAAGGGCAAGCAGCTCTGGTCGTTCCCGG CGCAGAGCGGCATCCTTGCCGCGCCGATGACCTATGCGATCGACGGCGAACAGTACGTCGCGGTCATGGTCGGCTGGGGC GGCGTGTGGGACGTCGCCACCGGCGTCCTCGCGCACAAGGCCAAGAAGCAGCGCAACATCAGCCGCCTGGTCGTGTTCAA GCTCGGCGGCAAGGCCACGCTGCCCGCTGCTCCCCCGATGGCCAAGATGGTCCTCGATCCGCCGCCGTTCACCGGCACGC CCGAACAGGCCAAGGCCGGCGGCGAACTCTACGGACGCTACTGCAACGTCTGCCACGGCGATGCGGCGGTTGCGGGCGGC GTGAACCCCGATCTGCGTCACTCCGCGGCGCTCAATGCCCCCGAGGCGATCCGCTCGGTGGTGATCGAGGGCGCGCTGCA GCACAACGGCATGGTCTCGTTCAAGTCGGCGCTGAAGCCCGAGGATGCGGACAACATCCGCCACTACCTCATCAAGCGCG CCAACGAGGACAAGGCTCTCGAAGCCAAGGGCGGCTGA
Upstream 100 bases:
>100_bases GGGCAAGATGGACAAGAAGGCGCTGCGCAAGCCCTGGTGGGGCAACGCAGACCGCATGGTGAACTGATCTGTAAGACAGA CAGTCGGGAGAGAGCTGGAT
Downstream 100 bases:
>100_bases GCGATCTCGCTATGTCCGGAACTTCGGTTCCGGACATCGTGCGGCAATACGAAAACTGTATGCTTCACTCACGATTATTG TTATGAAGCATAGCATGTTT
Product: Pyrrolo-quinoline quinone
Products: NA
Alternate protein names: G3-ADH subunit I [H]
Number of amino acids: Translated: 705; Mature: 705
Protein sequence:
>705_residues MRLKVLGLMAALLPLAACNIKSEGGGDAVANAGVTDALIAQAPEGEWLSYGRDYGEQRFSPLTQINDGNVGQLGLAWFHD LETARGQEATPLMHDGTLYISTAWSMVKAFDAKTGALKWSYDPEVPRETLVRACCDAVNRGVALYGDKVFVGTLDGRLVA LDQKTGKVVWSKVVVPNQEDYTITGAPRVVKGKVLIGSGGSEYKARGYIAAYDVNTGNEVWKFHTVPGNPADGFENKAME NAARTWAGEWWKLGGGGTVWDSITYDPATNLVLFGTGNAEPWNPAAAGREGDSLYTSSIVAVNADTGDYVWHFQETPEDR WDFDSAQQITLADLTIDGQRRHVILHAPKNGHVYVLDARTGQFLSATPFVMVNWATGIDPKTGKATVNPEARYEKTGKPF VSLPGAVGAHSWQPQSFSPKTGLLYLPVNNAAFPYAAAKDWKATDIGFQTGLDGYVTSMPADAKVQGAAMKATTGTLVAW DPVAKKAAWKVELPSPSNGGILSTAGNLVFQGTAGGDFVAYNADKGKQLWSFPAQSGILAAPMTYAIDGEQYVAVMVGWG GVWDVATGVLAHKAKKQRNISRLVVFKLGGKATLPAAPPMAKMVLDPPPFTGTPEQAKAGGELYGRYCNVCHGDAAVAGG VNPDLRHSAALNAPEAIRSVVIEGALQHNGMVSFKSALKPEDADNIRHYLIKRANEDKALEAKGG
Sequences:
>Translated_705_residues MRLKVLGLMAALLPLAACNIKSEGGGDAVANAGVTDALIAQAPEGEWLSYGRDYGEQRFSPLTQINDGNVGQLGLAWFHD LETARGQEATPLMHDGTLYISTAWSMVKAFDAKTGALKWSYDPEVPRETLVRACCDAVNRGVALYGDKVFVGTLDGRLVA LDQKTGKVVWSKVVVPNQEDYTITGAPRVVKGKVLIGSGGSEYKARGYIAAYDVNTGNEVWKFHTVPGNPADGFENKAME NAARTWAGEWWKLGGGGTVWDSITYDPATNLVLFGTGNAEPWNPAAAGREGDSLYTSSIVAVNADTGDYVWHFQETPEDR WDFDSAQQITLADLTIDGQRRHVILHAPKNGHVYVLDARTGQFLSATPFVMVNWATGIDPKTGKATVNPEARYEKTGKPF VSLPGAVGAHSWQPQSFSPKTGLLYLPVNNAAFPYAAAKDWKATDIGFQTGLDGYVTSMPADAKVQGAAMKATTGTLVAW DPVAKKAAWKVELPSPSNGGILSTAGNLVFQGTAGGDFVAYNADKGKQLWSFPAQSGILAAPMTYAIDGEQYVAVMVGWG GVWDVATGVLAHKAKKQRNISRLVVFKLGGKATLPAAPPMAKMVLDPPPFTGTPEQAKAGGELYGRYCNVCHGDAAVAGG VNPDLRHSAALNAPEAIRSVVIEGALQHNGMVSFKSALKPEDADNIRHYLIKRANEDKALEAKGG >Mature_705_residues MRLKVLGLMAALLPLAACNIKSEGGGDAVANAGVTDALIAQAPEGEWLSYGRDYGEQRFSPLTQINDGNVGQLGLAWFHD LETARGQEATPLMHDGTLYISTAWSMVKAFDAKTGALKWSYDPEVPRETLVRACCDAVNRGVALYGDKVFVGTLDGRLVA LDQKTGKVVWSKVVVPNQEDYTITGAPRVVKGKVLIGSGGSEYKARGYIAAYDVNTGNEVWKFHTVPGNPADGFENKAME NAARTWAGEWWKLGGGGTVWDSITYDPATNLVLFGTGNAEPWNPAAAGREGDSLYTSSIVAVNADTGDYVWHFQETPEDR WDFDSAQQITLADLTIDGQRRHVILHAPKNGHVYVLDARTGQFLSATPFVMVNWATGIDPKTGKATVNPEARYEKTGKPF VSLPGAVGAHSWQPQSFSPKTGLLYLPVNNAAFPYAAAKDWKATDIGFQTGLDGYVTSMPADAKVQGAAMKATTGTLVAW DPVAKKAAWKVELPSPSNGGILSTAGNLVFQGTAGGDFVAYNADKGKQLWSFPAQSGILAAPMTYAIDGEQYVAVMVGWG GVWDVATGVLAHKAKKQRNISRLVVFKLGGKATLPAAPPMAKMVLDPPPFTGTPEQAKAGGELYGRYCNVCHGDAAVAGG VNPDLRHSAALNAPEAIRSVVIEGALQHNGMVSFKSALKPEDADNIRHYLIKRANEDKALEAKGG
Specific function: Catalyzes the oxidation of primary alcohols except for methanol that is not a substrate [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=672, Percent_Identity=26.9345238095238, Blast_Score=171, Evalue=1e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR017512 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.2.8 [H]
Molecular weight: Translated: 75199; Mature: 75199
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLKVLGLMAALLPLAACNIKSEGGGDAVANAGVTDALIAQAPEGEWLSYGRDYGEQRFS CEEHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHCC PLTQINDGNVGQLGLAWFHDLETARGQEATPLMHDGTLYISTAWSMVKAFDAKTGALKWS CCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCEEECCEEEEEEHHHHHHHHCCCCCEEEEC YDPEVPRETLVRACCDAVNRGVALYGDKVFVGTLDGRLVALDQKTGKVVWSKVVVPNQED CCCCCCHHHHHHHHHHHHHCCEEEECCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCC YTITGAPRVVKGKVLIGSGGSEYKARGYIAAYDVNTGNEVWKFHTVPGNPADGFENKAME EEEECCCEEEEEEEEEECCCCCCEECEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHH NAARTWAGEWWKLGGGGTVWDSITYDPATNLVLFGTGNAEPWNPAAAGREGDSLYTSSIV HHHHHCCCCCEEECCCCEEECCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEE AVNADTGDYVWHFQETPEDRWDFDSAQQITLADLTIDGQRRHVILHAPKNGHVYVLDART EEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCEEEEECCC GQFLSATPFVMVNWATGIDPKTGKATVNPEARYEKTGKPFVSLPGAVGAHSWQPQSFSPK CCCEECCCEEEEEEECCCCCCCCCEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCC TGLLYLPVNNAAFPYAAAKDWKATDIGFQTGLDGYVTSMPADAKVQGAAMKATTGTLVAW CCEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCCEECCCCCCEECCEEEEECCCEEEEE DPVAKKAAWKVELPSPSNGGILSTAGNLVFQGTAGGDFVAYNADKGKQLWSFPAQSGILA CCCCCCCEEEEECCCCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEECCCCCCCEEE APMTYAIDGEQYVAVMVGWGGVWDVATGVLAHKAKKQRNISRLVVFKLGGKATLPAAPPM CCEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEECCCCCCC AKMVLDPPPFTGTPEQAKAGGELYGRYCNVCHGDAAVAGGVNPDLRHSAALNAPEAIRSV HHEEECCCCCCCCCHHHHCCHHHHHHHHCCCCCCCEEECCCCCCHHHHHCCCCHHHHHHH VIEGALQHNGMVSFKSALKPEDADNIRHYLIKRANEDKALEAKGG HHHHHHHCCCEEEEHHHCCCCCHHHHHHHHHHCCCCCCCEECCCC >Mature Secondary Structure MRLKVLGLMAALLPLAACNIKSEGGGDAVANAGVTDALIAQAPEGEWLSYGRDYGEQRFS CEEHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHCC PLTQINDGNVGQLGLAWFHDLETARGQEATPLMHDGTLYISTAWSMVKAFDAKTGALKWS CCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCEEECCEEEEEEHHHHHHHHCCCCCEEEEC YDPEVPRETLVRACCDAVNRGVALYGDKVFVGTLDGRLVALDQKTGKVVWSKVVVPNQED CCCCCCHHHHHHHHHHHHHCCEEEECCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCC YTITGAPRVVKGKVLIGSGGSEYKARGYIAAYDVNTGNEVWKFHTVPGNPADGFENKAME EEEECCCEEEEEEEEEECCCCCCEECEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHH NAARTWAGEWWKLGGGGTVWDSITYDPATNLVLFGTGNAEPWNPAAAGREGDSLYTSSIV HHHHHCCCCCEEECCCCEEECCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEE AVNADTGDYVWHFQETPEDRWDFDSAQQITLADLTIDGQRRHVILHAPKNGHVYVLDART EEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCEEEEECCC GQFLSATPFVMVNWATGIDPKTGKATVNPEARYEKTGKPFVSLPGAVGAHSWQPQSFSPK CCCEECCCEEEEEEECCCCCCCCCEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCC TGLLYLPVNNAAFPYAAAKDWKATDIGFQTGLDGYVTSMPADAKVQGAAMKATTGTLVAW CCEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCCEECCCCCCEECCEEEEECCCEEEEE DPVAKKAAWKVELPSPSNGGILSTAGNLVFQGTAGGDFVAYNADKGKQLWSFPAQSGILA CCCCCCCEEEEECCCCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEECCCCCCCEEE APMTYAIDGEQYVAVMVGWGGVWDVATGVLAHKAKKQRNISRLVVFKLGGKATLPAAPPM CCEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEECCCCCCC AKMVLDPPPFTGTPEQAKAGGELYGRYCNVCHGDAAVAGGVNPDLRHSAALNAPEAIRSV HHEEECCCCCCCCCHHHHCCHHHHHHHHCCCCCCCEEECCCCCCHHHHHCCCCHHHHHHH VIEGALQHNGMVSFKSALKPEDADNIRHYLIKRANEDKALEAKGG HHHHHHHCCCEEEEHHHCCCCCHHHHHHHHHHCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9055427 [H]