| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87200881
Identifier: 87200881
GI number: 87200881
Start: 3089774
End: 3090646
Strand: Reverse
Name: 87200881
Synonym: Saro_2868
Alternate gene names: NA
Gene position: 3090646-3089774 (Counterclockwise)
Preceding gene: 87200882
Following gene: 87200880
Centisome position: 86.78
GC content: 61.51
Gene sequence:
>873_bases GTGCCCATCGACCTTTCGAAGATCAAGGCGATCGACGTCCACGTCCATGCCGAGGTCTCGTGCCATGATCCGGAAGACCC GGTAATGGGCAAGTTCTTCGATGCGGCATCGGCCTACTTCAAGGCCCCGCGCGAGCGTCCCAAGATGCCCGAGATCATCG AGATCTACCGCGAACAGCAGATCGCGTTCTGCATGTTCACCGTCGATTGCGAGAGCGGCATCGGTGCGAAGCGCGTCTCG AACTACGAGATCGCCGAACTGGCCAACAAGAACGACGACATCTGCATCCCCTTCGCCTCGATCGATCCGCACAAGGGCAG GATGGGCGCCCGCGAGGCGCGCGACCTTATCGAGAACCACGGGGTCAAGGGCTTCAAGTTCCACCACATCATGCAGAACA TCGAGCCTGCCTCGCAGGTCGGCTACCCGATCTACGAGGTGATCAACGAATACAAGCTGCCCGCGATCTTCCACACCGGC CATTCCGGGATGGGCACGGGAATGCGCGGCGGTGGCGGCGTCCGCCTCAAGTATGGCCAGCCCATGCTGGTCGATGATGT CGCGGTCGATTTCCCCGACATGAAGATCATCCTCGCGCACCCCTCGTGGCCGTGGGTGGACGAAAGCCTGTCGATGGCGC TGCACAAGGACAACGTGTTCATCGACCTGTCGGGCTGGTCGCCGAAGTACTTCCAGCCGCAGATCATCCAGTATGCCAAC ACGCAGCTTCGCAAGAAGATGCTGTTCGGTTCGGACTTCCCGCTGATCCACCCCCAGAAGTGGCTCGATGCCGCCCGCCA GGTCGGCTTCAAGGAGGAAGTTCTGCCCGGCATCATGAAGGACAACGCGGCCCGCGTCCTCGGCCTCGCCTGA
Upstream 100 bases:
>100_bases CGCCTACCTCGAGACCAAGACCGTCATCATCCAGATGTAACGACAACCGGGGGAGGGGCCATGCTCCTCTCCCACCGTTC AAAGAAATCGGAGAGAACCA
Downstream 100 bases:
>100_bases GCGGGTCTGAAGGAGCAGGCCCGAAGGAGAAGCCGATGCCCGATCCCGACGATATCCGCGCCTGGCAGAGGCTCGATGCG GAAACGACCACGTCGGGCCG
Product: amidohydrolase 2
Products: NA
Alternate protein names: Amidohydrolase Family Protein; Metal-Dependent Hydrolase; Metal-Dependent Hydrolase Of TIM-Barrel Fold; TIM-Barrel Fold Metal-Dependent Hydrolase; Antibiotic-Resistance Protein; Amidohydrolase Family
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MPIDLSKIKAIDVHVHAEVSCHDPEDPVMGKFFDAASAYFKAPRERPKMPEIIEIYREQQIAFCMFTVDCESGIGAKRVS NYEIAELANKNDDICIPFASIDPHKGRMGAREARDLIENHGVKGFKFHHIMQNIEPASQVGYPIYEVINEYKLPAIFHTG HSGMGTGMRGGGGVRLKYGQPMLVDDVAVDFPDMKIILAHPSWPWVDESLSMALHKDNVFIDLSGWSPKYFQPQIIQYAN TQLRKKMLFGSDFPLIHPQKWLDAARQVGFKEEVLPGIMKDNAARVLGLA
Sequences:
>Translated_290_residues MPIDLSKIKAIDVHVHAEVSCHDPEDPVMGKFFDAASAYFKAPRERPKMPEIIEIYREQQIAFCMFTVDCESGIGAKRVS NYEIAELANKNDDICIPFASIDPHKGRMGAREARDLIENHGVKGFKFHHIMQNIEPASQVGYPIYEVINEYKLPAIFHTG HSGMGTGMRGGGGVRLKYGQPMLVDDVAVDFPDMKIILAHPSWPWVDESLSMALHKDNVFIDLSGWSPKYFQPQIIQYAN TQLRKKMLFGSDFPLIHPQKWLDAARQVGFKEEVLPGIMKDNAARVLGLA >Mature_289_residues PIDLSKIKAIDVHVHAEVSCHDPEDPVMGKFFDAASAYFKAPRERPKMPEIIEIYREQQIAFCMFTVDCESGIGAKRVSN YEIAELANKNDDICIPFASIDPHKGRMGAREARDLIENHGVKGFKFHHIMQNIEPASQVGYPIYEVINEYKLPAIFHTGH SGMGTGMRGGGGVRLKYGQPMLVDDVAVDFPDMKIILAHPSWPWVDESLSMALHKDNVFIDLSGWSPKYFQPQIIQYANT QLRKKMLFGSDFPLIHPQKWLDAARQVGFKEEVLPGIMKDNAARVLGLA
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32638; Mature: 32507
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIDLSKIKAIDVHVHAEVSCHDPEDPVMGKFFDAASAYFKAPRERPKMPEIIEIYREQQ CCCCCHHEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC IAFCMFTVDCESGIGAKRVSNYEIAELANKNDDICIPFASIDPHKGRMGAREARDLIENH EEEEEEEEECCCCCCCHHCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHC GVKGFKFHHIMQNIEPASQVGYPIYEVINEYKLPAIFHTGHSGMGTGMRGGGGVRLKYGQ CCCCEEHHHHHHCCCHHHHHCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCC PMLVDDVAVDFPDMKIILAHPSWPWVDESLSMALHKDNVFIDLSGWSPKYFQPQIIQYAN CEEEHHHCCCCCCEEEEEECCCCCCCCHHHHHEEECCCEEEEECCCCCCCCCHHHHHHHH TQLRKKMLFGSDFPLIHPQKWLDAARQVGFKEEVLPGIMKDNAARVLGLA HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHCHHHHCCCCCEEECC >Mature Secondary Structure PIDLSKIKAIDVHVHAEVSCHDPEDPVMGKFFDAASAYFKAPRERPKMPEIIEIYREQQ CCCCHHEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC IAFCMFTVDCESGIGAKRVSNYEIAELANKNDDICIPFASIDPHKGRMGAREARDLIENH EEEEEEEEECCCCCCCHHCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHC GVKGFKFHHIMQNIEPASQVGYPIYEVINEYKLPAIFHTGHSGMGTGMRGGGGVRLKYGQ CCCCEEHHHHHHCCCHHHHHCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCC PMLVDDVAVDFPDMKIILAHPSWPWVDESLSMALHKDNVFIDLSGWSPKYFQPQIIQYAN CEEEHHHCCCCCCEEEEEECCCCCCCCHHHHHEEECCCEEEEECCCCCCCCCHHHHHHHH TQLRKKMLFGSDFPLIHPQKWLDAARQVGFKEEVLPGIMKDNAARVLGLA HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHCHHHHCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA