| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200757
Identifier: 87200757
GI number: 87200757
Start: 2968661
End: 2970802
Strand: Direct
Name: 87200757
Synonym: Saro_2744
Alternate gene names: NA
Gene position: 2968661-2970802 (Clockwise)
Preceding gene: 87200756
Following gene: 87200758
Centisome position: 83.35
GC content: 62.75
Gene sequence:
>2142_bases ATGAGCACTGTGAACTATTTCGGCTTTGATCCGAACGCGCCTTCGGTCGCCCTCATCGCCGGTCCCGAGTTCCGCGACGA CTTCACCACGTCTGGCAACCTCAATGGGAGGCCGGGCTGGTTCATTGAAACCCGTCCAACCTTCTCCGGTCAGGCCAACG CGCTGTCTTCGGCGAATGGCAAGGCTGGCGGCACGACCGGCAGCGCGGCCTTTGCCCTGCATACCGCGAGCGTTGAAACG GTGCGTGTGCAGTTCAAGGTGGGCGCATACGGCGCGGCCCTGCATCACCATGTCAATATCGCGGCGGTGGATGCCGAGCG CGACTGGCTGAACATCAACGTCTCGACCACGGTTTCGAGCGGACTCCAGACCGGCACGATCACCTTCGCCAAGGTGGTCA ACGGGGCATCGCTGTCGAATATCGCGATCCTCCAGCAGTGGCGCGCGGAACTGGGCGACACGCTCGAAAGCGATTTTACC GAAGTTGCTGGGGTGAAATACTGGACCTGCTACCTCAATGGCCAGCAGGCGGGCGCGCCGGTCGATATCACGTCGTGGGG CGGCGCATTCACCAAGAAGCACGGCATCATCGGCAACATTGCCAGTTCGACCGACAGCTTCCAGATCACCGATCCTGCCA CGCAGGTCGCGCTGCGCCTGTTCATGCCGGGGCGCACCATTTACCGCAATTCGGACGGGTCGGTCACTTGGCGGATCAAG GTCTATTACACCGGCCCCGATCCCGATGCGCTCTATGCCACGGTCTATGACCTCTCGACCGGCTCGGAAGTGGCCGTATC GGGCCTGACCGATGTGGCCTTGTCGAGCTTCGCGGCGGCATCCGGAACCGCTACCGGGACGCTCACGGCAACCTCTTCGC AGGTTTCCAGCGGCGGGCCGTTCTTCGTTCGTGTCACGCGCAAGCGACTGTCCGCACTGCTCGGGGCGAATACCTCGGTA GTGGATGGCCCCTACCAGACCGTTGGCGAGATCGACATTGCCAACGGCCAGTCTCTTGCCGTCGCCGCATTCTCGCAGAC CCTGACGACTGCCACCTATTCGCAGCCGACGAATTGCTGGCATCTGGAGGGCGTCCCTACCAACGGTTCCACGCTGGGCG CATCATACACCCGCCGCCTTCGTCCCGTCAGTGGTAACACCTCGACTGCCGCGCTGGCGAACGTGGTCAAGACGGTTTCA AGCGTGAACCTCACGATTGCCAGCGGCGGTGTCTCGGGCACGGCGATTGCAGTACGCGGGGCTGGTTCGGTCTGTCAGGC CGCGCTCAAGGAAAGCATCGACCGTGCGGGTGGCCGCATCCACTTCGTCCACCACGTCGATGGTCAGTCCGACGTTACCA CGGCGCAGGCCAGCTATATTGCTGCGCTCCAGGCGATCTATGACGATCTCGACGCCTACAACGGCACGCCGGTCAAAGTC CTTCTTCATCCCATTGCCTCGTGCTGGAAGAACAGCACCGGCAATGACGAACAATGGCAGGACATGCGCCGCCTGCACTG GAAGCTGACGCAGGACTATCCCTCGCGCTACTTCCTCGGGGCCTTCACGCTCGACTGCCAGCACTTCGACAGCCTTCACT TCAATGGCGACGGCTATGGCGTGATGAATACCCGCGCAGGGTGGGCAAGAGCCAAGGCGCGCGGCGACGTGGCAAACGAC CGCAACGGCCCCTCGCTCTACAGCGTGACGCGGGTCGATGCGCAGACGGTCTATTGCGTCTACGATCTGAACGGCGCGGA CAGTCTGGAACTGGTCAACACGGCCTATGCCAGCGAGTATCACGGTGGCATGTCGTTCTCGACCGCAGCGACGAAGAGCG GCGGGACCATCGCAACGAAGCTCTACCCGACCGGCGCGACCGTCGATGCATCACCCACCGGAACGCGGCAGGGCATCACG TTCACCTTCGCGGCCAACACCTTCCCCGGCACGGTCTATGCGTGGGGGGCCTACGGGAAGAACCCGTTCAACCCGAACGA CAACAACACGAACACGGACCCGATCAACCTCGACCTAGCGAACAAGGCATCGATGATCCGGGGCGTCTATTCGGACGGCA TGAAGGTGGCGCTGCGGCCCCGGTTCACGACCGACAGCCTCGATTACCTGAGTGCCGCGTGA
Upstream 100 bases:
>100_bases TTTCGCTCGCCGTCGCGGCAAATGACCGCGTGTCGTTCCAGGTCAACAACATCACCGGAACGCCGATCCTTGCCGAAATT CAGCTTCTGGGGCTGCCCAC
Downstream 100 bases:
>100_bases TGACCGACACCGGAAACGCCGCACAGGTCCGCATGGTGGCCGAGCAGGTTGCCGAGACTGTCATTCTCAAGTTTGCAGCG GAGCATCCGGAGTTGCGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 713; Mature: 712
Protein sequence:
>713_residues MSTVNYFGFDPNAPSVALIAGPEFRDDFTTSGNLNGRPGWFIETRPTFSGQANALSSANGKAGGTTGSAAFALHTASVET VRVQFKVGAYGAALHHHVNIAAVDAERDWLNINVSTTVSSGLQTGTITFAKVVNGASLSNIAILQQWRAELGDTLESDFT EVAGVKYWTCYLNGQQAGAPVDITSWGGAFTKKHGIIGNIASSTDSFQITDPATQVALRLFMPGRTIYRNSDGSVTWRIK VYYTGPDPDALYATVYDLSTGSEVAVSGLTDVALSSFAAASGTATGTLTATSSQVSSGGPFFVRVTRKRLSALLGANTSV VDGPYQTVGEIDIANGQSLAVAAFSQTLTTATYSQPTNCWHLEGVPTNGSTLGASYTRRLRPVSGNTSTAALANVVKTVS SVNLTIASGGVSGTAIAVRGAGSVCQAALKESIDRAGGRIHFVHHVDGQSDVTTAQASYIAALQAIYDDLDAYNGTPVKV LLHPIASCWKNSTGNDEQWQDMRRLHWKLTQDYPSRYFLGAFTLDCQHFDSLHFNGDGYGVMNTRAGWARAKARGDVAND RNGPSLYSVTRVDAQTVYCVYDLNGADSLELVNTAYASEYHGGMSFSTAATKSGGTIATKLYPTGATVDASPTGTRQGIT FTFAANTFPGTVYAWGAYGKNPFNPNDNNTNTDPINLDLANKASMIRGVYSDGMKVALRPRFTTDSLDYLSAA
Sequences:
>Translated_713_residues MSTVNYFGFDPNAPSVALIAGPEFRDDFTTSGNLNGRPGWFIETRPTFSGQANALSSANGKAGGTTGSAAFALHTASVET VRVQFKVGAYGAALHHHVNIAAVDAERDWLNINVSTTVSSGLQTGTITFAKVVNGASLSNIAILQQWRAELGDTLESDFT EVAGVKYWTCYLNGQQAGAPVDITSWGGAFTKKHGIIGNIASSTDSFQITDPATQVALRLFMPGRTIYRNSDGSVTWRIK VYYTGPDPDALYATVYDLSTGSEVAVSGLTDVALSSFAAASGTATGTLTATSSQVSSGGPFFVRVTRKRLSALLGANTSV VDGPYQTVGEIDIANGQSLAVAAFSQTLTTATYSQPTNCWHLEGVPTNGSTLGASYTRRLRPVSGNTSTAALANVVKTVS SVNLTIASGGVSGTAIAVRGAGSVCQAALKESIDRAGGRIHFVHHVDGQSDVTTAQASYIAALQAIYDDLDAYNGTPVKV LLHPIASCWKNSTGNDEQWQDMRRLHWKLTQDYPSRYFLGAFTLDCQHFDSLHFNGDGYGVMNTRAGWARAKARGDVAND RNGPSLYSVTRVDAQTVYCVYDLNGADSLELVNTAYASEYHGGMSFSTAATKSGGTIATKLYPTGATVDASPTGTRQGIT FTFAANTFPGTVYAWGAYGKNPFNPNDNNTNTDPINLDLANKASMIRGVYSDGMKVALRPRFTTDSLDYLSAA >Mature_712_residues STVNYFGFDPNAPSVALIAGPEFRDDFTTSGNLNGRPGWFIETRPTFSGQANALSSANGKAGGTTGSAAFALHTASVETV RVQFKVGAYGAALHHHVNIAAVDAERDWLNINVSTTVSSGLQTGTITFAKVVNGASLSNIAILQQWRAELGDTLESDFTE VAGVKYWTCYLNGQQAGAPVDITSWGGAFTKKHGIIGNIASSTDSFQITDPATQVALRLFMPGRTIYRNSDGSVTWRIKV YYTGPDPDALYATVYDLSTGSEVAVSGLTDVALSSFAAASGTATGTLTATSSQVSSGGPFFVRVTRKRLSALLGANTSVV DGPYQTVGEIDIANGQSLAVAAFSQTLTTATYSQPTNCWHLEGVPTNGSTLGASYTRRLRPVSGNTSTAALANVVKTVSS VNLTIASGGVSGTAIAVRGAGSVCQAALKESIDRAGGRIHFVHHVDGQSDVTTAQASYIAALQAIYDDLDAYNGTPVKVL LHPIASCWKNSTGNDEQWQDMRRLHWKLTQDYPSRYFLGAFTLDCQHFDSLHFNGDGYGVMNTRAGWARAKARGDVANDR NGPSLYSVTRVDAQTVYCVYDLNGADSLELVNTAYASEYHGGMSFSTAATKSGGTIATKLYPTGATVDASPTGTRQGITF TFAANTFPGTVYAWGAYGKNPFNPNDNNTNTDPINLDLANKASMIRGVYSDGMKVALRPRFTTDSLDYLSAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75382; Mature: 75251
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVNYFGFDPNAPSVALIAGPEFRDDFTTSGNLNGRPGWFIETRPTFSGQANALSSANG CCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC KAGGTTGSAAFALHTASVETVRVQFKVGAYGAALHHHVNIAAVDAERDWLNINVSTTVSS CCCCCCCCEEEEEEECCEEEEEEEEEECCEEEEHEEEEEEEEEECCCCEEEEEEEEECCC GLQTGTITFAKVVNGASLSNIAILQQWRAELGDTLESDFTEVAGVKYWTCYLNGQQAGAP CCCCCEEEEEEHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEECCCCCCCC VDITSWGGAFTKKHGIIGNIASSTDSFQITDPATQVALRLFMPGRTIYRNSDGSVTWRIK EEEECCCCCHHHCCCCEEEECCCCCCEEEECHHHHEEEEEECCCCEEEECCCCCEEEEEE VYYTGPDPDALYATVYDLSTGSEVAVSGLTDVALSSFAAASGTATGTLTATSSQVSSGGP EEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC FFVRVTRKRLSALLGANTSVVDGPYQTVGEIDIANGQSLAVAAFSQTLTTATYSQPTNCW EEEEEEHHHHHHHHCCCCCEECCCCCCCCEEEECCCCEEEEEEHHHHHEEEECCCCCCEE HLEGVPTNGSTLGASYTRRLRPVSGNTSTAALANVVKTVSSVNLTIASGGVSGTAIAVRG EEEEECCCCCCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCEEEEEEC AGSVCQAALKESIDRAGGRIHFVHHVDGQSDVTTAQASYIAALQAIYDDLDAYNGTPVKV CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH LLHPIASCWKNSTGNDEQWQDMRRLHWKLTQDYPSRYFLGAFTLDCQHFDSLHFNGDGYG HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEECCCCCE VMNTRAGWARAKARGDVANDRNGPSLYSVTRVDAQTVYCVYDLNGADSLELVNTAYASEY EECCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHH HGGMSFSTAATKSGGTIATKLYPTGATVDASPTGTRQGITFTFAANTFPGTVYAWGAYGK CCCEEEECCCCCCCCEEEEEEECCCCEECCCCCCCCCCEEEEEECCCCCCCEEEECCCCC NPFNPNDNNTNTDPINLDLANKASMIRGVYSDGMKVALRPRFTTDSLDYLSAA CCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCC >Mature Secondary Structure STVNYFGFDPNAPSVALIAGPEFRDDFTTSGNLNGRPGWFIETRPTFSGQANALSSANG CCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC KAGGTTGSAAFALHTASVETVRVQFKVGAYGAALHHHVNIAAVDAERDWLNINVSTTVSS CCCCCCCCEEEEEEECCEEEEEEEEEECCEEEEHEEEEEEEEEECCCCEEEEEEEEECCC GLQTGTITFAKVVNGASLSNIAILQQWRAELGDTLESDFTEVAGVKYWTCYLNGQQAGAP CCCCCEEEEEEHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEECCCCCCCC VDITSWGGAFTKKHGIIGNIASSTDSFQITDPATQVALRLFMPGRTIYRNSDGSVTWRIK EEEECCCCCHHHCCCCEEEECCCCCCEEEECHHHHEEEEEECCCCEEEECCCCCEEEEEE VYYTGPDPDALYATVYDLSTGSEVAVSGLTDVALSSFAAASGTATGTLTATSSQVSSGGP EEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC FFVRVTRKRLSALLGANTSVVDGPYQTVGEIDIANGQSLAVAAFSQTLTTATYSQPTNCW EEEEEEHHHHHHHHCCCCCEECCCCCCCCEEEECCCCEEEEEEHHHHHEEEECCCCCCEE HLEGVPTNGSTLGASYTRRLRPVSGNTSTAALANVVKTVSSVNLTIASGGVSGTAIAVRG EEEEECCCCCCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCEEEEEEC AGSVCQAALKESIDRAGGRIHFVHHVDGQSDVTTAQASYIAALQAIYDDLDAYNGTPVKV CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH LLHPIASCWKNSTGNDEQWQDMRRLHWKLTQDYPSRYFLGAFTLDCQHFDSLHFNGDGYG HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEECCCCCE VMNTRAGWARAKARGDVANDRNGPSLYSVTRVDAQTVYCVYDLNGADSLELVNTAYASEY EECCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHH HGGMSFSTAATKSGGTIATKLYPTGATVDASPTGTRQGITFTFAANTFPGTVYAWGAYGK CCCEEEECCCCCCCCEEEEEEECCCCEECCCCCCCCCCEEEEEECCCCCCCEEEECCCCC NPFNPNDNNTNTDPINLDLANKASMIRGVYSDGMKVALRPRFTTDSLDYLSAA CCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA