| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200723
Identifier: 87200723
GI number: 87200723
Start: 2943823
End: 2944263
Strand: Direct
Name: 87200723
Synonym: Saro_2710
Alternate gene names: NA
Gene position: 2943823-2944263 (Clockwise)
Preceding gene: 87200722
Following gene: 87200724
Centisome position: 82.65
GC content: 63.72
Gene sequence:
>441_bases ATGACCACCTGGGCCGACCTTGAAACCCGGCTCGACGCCGATCCGTTGTTCTTCGTGCAGAAGCCCGACGGCCTCAAGCA CCTGAGCGAGGACGAGCGCTGCAAGACGCTGGTCAAACTCGTGCATCAGCTCGCTCCGCAGGCCGAGATTGCGCACGTCA AGAACGAAGGGCGGCACAACCATGCCAAGGCCAAGACGCTCGGCGTGGTGACCGGTCACGGCGACTACATCGTGACCTGG CCGAAGTGCGGAACCGCATTCGTCGAGATGAAGGGCTATAGCGCCGCCGGTCGTCCCGGCGAGCTTTCGCAGGCGCAGGT CGATTGGGCCAACCGGAAGTTCATGATGGGCTTCCCGGTGGCGTGTTTCTTCTGTCCGCACGCCGCGTTCGAATGGCTAG TGTCGCAGGGGATGCCGGTGATCGGGAGGATCGCGGCGTGA
Upstream 100 bases:
>100_bases GCATCGCGGCCAGCCATGCGCGGCGGGGAACGAGGGACTTCGACCAGTTGCTCGCCAAGCTGCGCGAGACCGTCGAGGCG CGGCGTCTGCGGGAGGTCGC
Downstream 100 bases:
>100_bases CGCGCGAAAACACCGTCATCAGCGCGGGCTCGCTCTTTCGTGGCATCGTCATGCGCCACATCCTCGCTGAGATAAGCGAT CCCGCCGAGATGAAGGCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MTTWADLETRLDADPLFFVQKPDGLKHLSEDERCKTLVKLVHQLAPQAEIAHVKNEGRHNHAKAKTLGVVTGHGDYIVTW PKCGTAFVEMKGYSAAGRPGELSQAQVDWANRKFMMGFPVACFFCPHAAFEWLVSQGMPVIGRIAA
Sequences:
>Translated_146_residues MTTWADLETRLDADPLFFVQKPDGLKHLSEDERCKTLVKLVHQLAPQAEIAHVKNEGRHNHAKAKTLGVVTGHGDYIVTW PKCGTAFVEMKGYSAAGRPGELSQAQVDWANRKFMMGFPVACFFCPHAAFEWLVSQGMPVIGRIAA >Mature_145_residues TTWADLETRLDADPLFFVQKPDGLKHLSEDERCKTLVKLVHQLAPQAEIAHVKNEGRHNHAKAKTLGVVTGHGDYIVTWP KCGTAFVEMKGYSAAGRPGELSQAQVDWANRKFMMGFPVACFFCPHAAFEWLVSQGMPVIGRIAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16178; Mature: 16047
Theoretical pI: Translated: 8.01; Mature: 8.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTWADLETRLDADPLFFVQKPDGLKHLSEDERCKTLVKLVHQLAPQAEIAHVKNEGRHN CCCCCCCHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCC HAKAKTLGVVTGHGDYIVTWPKCGTAFVEMKGYSAAGRPGELSQAQVDWANRKFMMGFPV CCCCEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCCCCCCCHHEECCCCCEEEECCCH ACFFCPHAAFEWLVSQGMPVIGRIAA HHHHHHHHHHHHHHHCCCCCEEEECC >Mature Secondary Structure TTWADLETRLDADPLFFVQKPDGLKHLSEDERCKTLVKLVHQLAPQAEIAHVKNEGRHN CCCCCCHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCC HAKAKTLGVVTGHGDYIVTWPKCGTAFVEMKGYSAAGRPGELSQAQVDWANRKFMMGFPV CCCCEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCCCCCCCHHEECCCCCEEEECCCH ACFFCPHAAFEWLVSQGMPVIGRIAA HHHHHHHHHHHHHHHCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA