| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87200719
Identifier: 87200719
GI number: 87200719
Start: 2941904
End: 2942581
Strand: Direct
Name: 87200719
Synonym: Saro_2706
Alternate gene names: NA
Gene position: 2941904-2942581 (Clockwise)
Preceding gene: 87200718
Following gene: 87200720
Centisome position: 82.6
GC content: 65.19
Gene sequence:
>678_bases GTGAGACCAGACCTCCCACTCACCAACGTGATGATCCTGCACCGCCCGGAAGCAGGCATCTGCATCGACCGGCTGCACAG GGGCCCGCGCAACTACGCTTCGCAGCTCGCGCGCTATATCCGCGACGCATCCAAGGTCCGCGCGCTGACCATGAACGAAT GGGGTCGCGCCCCGTCGCTGGAGGAATGCAGCGAACTGATCGCCGATGCACAGGCCAAGCGCGCAGCCTATCGCGCCGAA AGCGAGCGGCTTGGCGAGTGCGACCGGGACGAGGCTCATTTCAGGCCGGCCCCCACATCGACGGCGCTCGACATGCAGCG CAGCGTCGAGAGTGCAGAGGCAAATCGCATCGAACTGCCGGACCTGTCTGCGGATGATGTCCCGACCGATGTGCGGCCGT TCTTCATCGACGATGCGGTCGAAGCCATCGCGCGCGCCATGAAGGTGACGGTTGCTGACATCATGGGCCCGGATCGCGCC AAGGTGTTCATGCAGGCGCGTCAGGTTGCCTATTGGGTCCTTCACCAACGCGGACAGTCCACGGCGCAGATCGGGCGCAG GCTCAACCGCGATCACAGCTCGGTAATCAACTCGCTTCGCCGGTACGAGACCCACGCCACGCCACGGATGCGGCTGGTTG CGGAGTGGTTTGCGGGCGCTGAGCGGAGGGCAGCGTGA
Upstream 100 bases:
>100_bases GGGCGGGCGCGATCGACTGCCTTTGCGGCATCGCCGACATGCTGCGGAACAAGCGTGACGCGATGCGCACCGGCAGCGTC TCGGAATTGCGGGGTGCGGC
Downstream 100 bases:
>100_bases TGCCCCTGCACGTCTCGAACCACGCCGTCGACCGCTTCATCGAGCGGATCGAATCCCTCCCCCGCGAGGAAGTTGTCGCC CGCCTATCTGGTCGCGCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 225; Mature: 225
Protein sequence:
>225_residues MRPDLPLTNVMILHRPEAGICIDRLHRGPRNYASQLARYIRDASKVRALTMNEWGRAPSLEECSELIADAQAKRAAYRAE SERLGECDRDEAHFRPAPTSTALDMQRSVESAEANRIELPDLSADDVPTDVRPFFIDDAVEAIARAMKVTVADIMGPDRA KVFMQARQVAYWVLHQRGQSTAQIGRRLNRDHSSVINSLRRYETHATPRMRLVAEWFAGAERRAA
Sequences:
>Translated_225_residues MRPDLPLTNVMILHRPEAGICIDRLHRGPRNYASQLARYIRDASKVRALTMNEWGRAPSLEECSELIADAQAKRAAYRAE SERLGECDRDEAHFRPAPTSTALDMQRSVESAEANRIELPDLSADDVPTDVRPFFIDDAVEAIARAMKVTVADIMGPDRA KVFMQARQVAYWVLHQRGQSTAQIGRRLNRDHSSVINSLRRYETHATPRMRLVAEWFAGAERRAA >Mature_225_residues MRPDLPLTNVMILHRPEAGICIDRLHRGPRNYASQLARYIRDASKVRALTMNEWGRAPSLEECSELIADAQAKRAAYRAE SERLGECDRDEAHFRPAPTSTALDMQRSVESAEANRIELPDLSADDVPTDVRPFFIDDAVEAIARAMKVTVADIMGPDRA KVFMQARQVAYWVLHQRGQSTAQIGRRLNRDHSSVINSLRRYETHATPRMRLVAEWFAGAERRAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25479; Mature: 25479
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPDLPLTNVMILHRPEAGICIDRLHRGPRNYASQLARYIRDASKVRALTMNEWGRAPSL CCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH EECSELIADAQAKRAAYRAESERLGECDRDEAHFRPAPTSTALDMQRSVESAEANRIELP HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC DLSADDVPTDVRPFFIDDAVEAIARAMKVTVADIMGPDRAKVFMQARQVAYWVLHQRGQS CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH TAQIGRRLNRDHSSVINSLRRYETHATPRMRLVAEWFAGAERRAA HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCCC >Mature Secondary Structure MRPDLPLTNVMILHRPEAGICIDRLHRGPRNYASQLARYIRDASKVRALTMNEWGRAPSL CCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH EECSELIADAQAKRAAYRAESERLGECDRDEAHFRPAPTSTALDMQRSVESAEANRIELP HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC DLSADDVPTDVRPFFIDDAVEAIARAMKVTVADIMGPDRAKVFMQARQVAYWVLHQRGQS CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH TAQIGRRLNRDHSSVINSLRRYETHATPRMRLVAEWFAGAERRAA HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA