| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is recT [H]
Identifier: 87200712
GI number: 87200712
Start: 2936495
End: 2937379
Strand: Reverse
Name: recT [H]
Synonym: Saro_2699
Alternate gene names: 87200712
Gene position: 2937379-2936495 (Counterclockwise)
Preceding gene: 87200713
Following gene: 87200711
Centisome position: 82.47
GC content: 64.63
Gene sequence:
>885_bases ATGGCATCCGCTGCCAGAGAGAACAGCCCTGTTGCCGTGGTGAAGCAGAACCTGACGGCAATGGCACCCGAGTTCCGGGC CGCGCTGCCTGCGCACGTCACGGTCGAGAAGTTCACCCGCGTTGCGCAGACCGCGATCCTGTCAAATCCGAACCTGATGC GCGCCGATCGCGCCAGCCTGTTCGGCTCGATCACCAAGCTCGCGCAGGACGGCTTGCTGCCCGACGGACGCGAAGCCGCG CTCGTGATGTTTGGCCAGCAGGTTCAGGCCATGCCGATGATTGCCGGTGTCTTGAAGAAGATCCGGCAGTCGGGCGAGGT GGCCAAAATCAGCGCCCAGGTCGTGCACGAAAACGACCACTTTGTTGTCAGCTATGGCTTCGACGAGGACGTCACCCACA ATCCGCCGCCGCTCGACAAGCCGCGCGGCAAGGCCATCGGTGCTTATGCCACCGCCGTTCTCAAGGACGGGTCGCGCATG CTCGAGGTCATGAGCCTCGAGGAGATCGATAAGGTCCGCGCTGTCAGCAGGGCCGGAAAGAGCGGGCCATGGGTGCAATG GTGGGGCGAGATGGCGCGCAAGACCGTGATGCGCCGCCTGTCCAAGCGCCTTCCCATGAGCACGGACCTCGAGGAGGAGG TGTTCAGCCGCGATGACACGATGACGACAGAATTCCGGCCGACGCTGATCGAAGGTGACGCGCAGGAAGCGCCGAAGGTC TCGCGCCTCGAAGCGCTCGAGCACCAGATCGAGGAGGCCGAGACTGTCGAATCCGAGCCGCTGCCCACAAACGAACCCGA AGGCCGCGCCGACGAGGACTACGGCGACCAGTACGACGGCACCGGCCCGAACGGTGAAACGCTGTTCGGCGGCGAGGAGG GCTGA
Upstream 100 bases:
>100_bases CCACAACTGTCGCCGCAACCCCGGATCGTGAAGCTGTCGCCGGCGAGATCATTCGCGGGCGCAAATCCTACCGCCGCTAT TCTGTGAAGGAGATGAAGTG
Downstream 100 bases:
>100_bases CCATGGAACTCATCACCACCGCCTTCGCGCTGTTCACCCTGGCCGCGCTCTACGCCGCGTACGTGACCAACCGCCGGCTC CAGAACCTCCGCTCGAACTG
Product: rect protein
Products: NA
Alternate protein names: P33 [H]
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MASAARENSPVAVVKQNLTAMAPEFRAALPAHVTVEKFTRVAQTAILSNPNLMRADRASLFGSITKLAQDGLLPDGREAA LVMFGQQVQAMPMIAGVLKKIRQSGEVAKISAQVVHENDHFVVSYGFDEDVTHNPPPLDKPRGKAIGAYATAVLKDGSRM LEVMSLEEIDKVRAVSRAGKSGPWVQWWGEMARKTVMRRLSKRLPMSTDLEEEVFSRDDTMTTEFRPTLIEGDAQEAPKV SRLEALEHQIEEAETVESEPLPTNEPEGRADEDYGDQYDGTGPNGETLFGGEEG
Sequences:
>Translated_294_residues MASAARENSPVAVVKQNLTAMAPEFRAALPAHVTVEKFTRVAQTAILSNPNLMRADRASLFGSITKLAQDGLLPDGREAA LVMFGQQVQAMPMIAGVLKKIRQSGEVAKISAQVVHENDHFVVSYGFDEDVTHNPPPLDKPRGKAIGAYATAVLKDGSRM LEVMSLEEIDKVRAVSRAGKSGPWVQWWGEMARKTVMRRLSKRLPMSTDLEEEVFSRDDTMTTEFRPTLIEGDAQEAPKV SRLEALEHQIEEAETVESEPLPTNEPEGRADEDYGDQYDGTGPNGETLFGGEEG >Mature_293_residues ASAARENSPVAVVKQNLTAMAPEFRAALPAHVTVEKFTRVAQTAILSNPNLMRADRASLFGSITKLAQDGLLPDGREAAL VMFGQQVQAMPMIAGVLKKIRQSGEVAKISAQVVHENDHFVVSYGFDEDVTHNPPPLDKPRGKAIGAYATAVLKDGSRML EVMSLEEIDKVRAVSRAGKSGPWVQWWGEMARKTVMRRLSKRLPMSTDLEEEVFSRDDTMTTEFRPTLIEGDAQEAPKVS RLEALEHQIEEAETVESEPLPTNEPEGRADEDYGDQYDGTGPNGETLFGGEEG
Specific function: Binds to single-stranded DNA and also promotes the renaturation of complementary single-stranded DNA. Function in recombination. Has a function similar to that of lambda redB [H]
COG id: COG3723
COG function: function code L; Recombinational DNA repair protein (RecE pathway)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787611, Length=223, Percent_Identity=38.1165919282511, Blast_Score=138, Evalue=5e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004590 - InterPro: IPR018330 [H]
Pfam domain/function: PF03837 RecT [H]
EC number: NA
Molecular weight: Translated: 32221; Mature: 32089
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASAARENSPVAVVKQNLTAMAPEFRAALPAHVTVEKFTRVAQTAILSNPNLMRADRASL CCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH FGSITKLAQDGLLPDGREAALVMFGQQVQAMPMIAGVLKKIRQSGEVAKISAQVVHENDH HHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC FVVSYGFDEDVTHNPPPLDKPRGKAIGAYATAVLKDGSRMLEVMSLEEIDKVRAVSRAGK EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC SGPWVQWWGEMARKTVMRRLSKRLPMSTDLEEEVFSRDDTMTTEFRPTLIEGDAQEAPKV CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCEEECCCHHHCCHH SRLEALEHQIEEAETVESEPLPTNEPEGRADEDYGDQYDGTGPNGETLFGGEEG HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ASAARENSPVAVVKQNLTAMAPEFRAALPAHVTVEKFTRVAQTAILSNPNLMRADRASL CCCCCCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH FGSITKLAQDGLLPDGREAALVMFGQQVQAMPMIAGVLKKIRQSGEVAKISAQVVHENDH HHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC FVVSYGFDEDVTHNPPPLDKPRGKAIGAYATAVLKDGSRMLEVMSLEEIDKVRAVSRAGK EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC SGPWVQWWGEMARKTVMRRLSKRLPMSTDLEEEVFSRDDTMTTEFRPTLIEGDAQEAPKV CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCEEECCCHHHCCHH SRLEALEHQIEEAETVESEPLPTNEPEGRADEDYGDQYDGTGPNGETLFGGEEG HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8244937; 9097039; 9278503; 8416902 [H]