| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200651
Identifier: 87200651
GI number: 87200651
Start: 2873950
End: 2874465
Strand: Direct
Name: 87200651
Synonym: Saro_2638
Alternate gene names: NA
Gene position: 2873950-2874465 (Clockwise)
Preceding gene: 87200650
Following gene: 87200652
Centisome position: 80.69
GC content: 63.57
Gene sequence:
>516_bases ATGAGCGCACCGGAATTTTCCCACGTCATCGACCTGCGGCAGATTACCGATCAGCCGGTCGTCCTCGAACCGGACGAGGC CGCTCGCCGCCGCCTGGCCGGCCGCTTCGGCATCCCCGCGATAAACGCCATGCGCGCCGAACTTCTTCTCTGCCTTGAAG GCACGGCGGTCGAGGCAAAAGGGCGGCTGACTGCAAAGATCATCCAATCCTGTGCCATTTCCGGCGACGACTTCCCGGTT TCCATCGACGAGCTGGTCGCGCTGCGTTTCGTGCCCGCCCGACAGACTTTGGTGCCGGACGAGGAACTGGAAATCAGCGC CGATGACTGCGACGAGATCGAATACGAGGGCTCCGCTTTCGACCTCGGCGAAGCCGTGGCGCAAAGCCTTGCCCTTGCGA TCGATCCGTTTGCGGAAGGCCCGAATGCGGACAAGGCCCGCAAGGAGCATCAACTCGGCGGCGAAGTCGCGTCGGGACCA TTCGCCGCGCTTGCCGCGCTGAAGAGCAAGGACTGA
Upstream 100 bases:
>100_bases AAGGCACCGACCCGCTGCTGGTGGCCCGCCGCGTCCGCGCCTTCGCCGCCGGCCTGGACCTTGTCCCCGCCTTTCGCGTT CTTGATGCGGAGATCGGAAA
Downstream 100 bases:
>100_bases CCCCTTGGCCCCTCCCCACGGCCGAGGCCGCGATCTTACCAGCGGCCCGATCCTGAAGACGCTGGTCCTGTTCTCCGCGC CGACACTGGCCTCGAACATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MSAPEFSHVIDLRQITDQPVVLEPDEAARRRLAGRFGIPAINAMRAELLLCLEGTAVEAKGRLTAKIIQSCAISGDDFPV SIDELVALRFVPARQTLVPDEELEISADDCDEIEYEGSAFDLGEAVAQSLALAIDPFAEGPNADKARKEHQLGGEVASGP FAALAALKSKD
Sequences:
>Translated_171_residues MSAPEFSHVIDLRQITDQPVVLEPDEAARRRLAGRFGIPAINAMRAELLLCLEGTAVEAKGRLTAKIIQSCAISGDDFPV SIDELVALRFVPARQTLVPDEELEISADDCDEIEYEGSAFDLGEAVAQSLALAIDPFAEGPNADKARKEHQLGGEVASGP FAALAALKSKD >Mature_170_residues SAPEFSHVIDLRQITDQPVVLEPDEAARRRLAGRFGIPAINAMRAELLLCLEGTAVEAKGRLTAKIIQSCAISGDDFPVS IDELVALRFVPARQTLVPDEELEISADDCDEIEYEGSAFDLGEAVAQSLALAIDPFAEGPNADKARKEHQLGGEVASGPF AALAALKSKD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18258; Mature: 18127
Theoretical pI: Translated: 4.17; Mature: 4.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPEFSHVIDLRQITDQPVVLEPDEAARRRLAGRFGIPAINAMRAELLLCLEGTAVEAK CCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEECCC GRLTAKIIQSCAISGDDFPVSIDELVALRFVPARQTLVPDEELEISADDCDEIEYEGSAF CCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC DLGEAVAQSLALAIDPFAEGPNADKARKEHQLGGEVASGPFAALAALKSKD HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCC >Mature Secondary Structure SAPEFSHVIDLRQITDQPVVLEPDEAARRRLAGRFGIPAINAMRAELLLCLEGTAVEAK CCCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEECCC GRLTAKIIQSCAISGDDFPVSIDELVALRFVPARQTLVPDEELEISADDCDEIEYEGSAF CCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC DLGEAVAQSLALAIDPFAEGPNADKARKEHQLGGEVASGPFAALAALKSKD HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA