Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 87200641

GI number: 87200641

Start: 2864556

End: 2865608

Strand: Direct

Name: yibD [C]

Synonym: Saro_2628

Alternate gene names: 87200641

Gene position: 2864556-2865608 (Clockwise)

Preceding gene: 87200639

Following gene: 87200642

Centisome position: 80.43

GC content: 64.77

Gene sequence:

>1053_bases
ATGAATGGCCGTCCGCCCGCCCTGTCCCGCATCCCCGAGCACCCCCGCGTCGCCGTCATCGTGCCAGCATATGGCGTGGC
TCACCTTGTCGGCGAGGCGTTGCGATCTCTCCAGCGCCAGACTCTGGAAGAGTGGGAATGCGTGGTGATCGACGACGGGG
CACCCGACGATGTTACCGCAGCCGTAGCTCCATTCCTCGATGACCGCCGCATCCGCTTCCTCGCCACGCCGAACGGCGGC
GTGTCTGCGGCACGGAACCGGGCCATCGCCGCATCTTCGGCACCCCTGATCGCCTTGCTCGACGGGGACGACCTTTTCCG
TCCTTCATATCTCGAAACGATGGTAGCGGTTCTGGAGGCTGACGCGGAAGCACGGCTCGCAACCTGCAACGCCCGAATCT
TTGGTGCGGTCGCGCGCGAGCGCACATGCGTGGAGCGCCGCCAGGGCAGCGGCGACGGCACGAAGGGCTCACTCGCCGAC
GTGCTCGATCGTTCCTTCAACGTCTATATCGGGACGACCTTTCGCCGGGCAGACTTCGAGCGGGTCGGCGGCTTCGACAC
GACCATGGCGCAATCCGAAGATTTCGATCTGTGGGTCAGGCTGATGATGCTGGGCGGACACGCGCACTATGTCGATGCGG
TTCTCGGCGATTACCGCGTACGCCCTGGCTCGGCTTCCAGCAACGCGGGCAGGATGCTTCTCGGCAACATCAAGGTATAC
GAGAAGGCCCGCTCACTCCTTGCACCGGACCGACCGGAGCGTGAGCTGATCGAACGCCTCATCGCCGATAATCGCGCTTC
CCTGGATTTCGAGCACGCGATGGATCGCATCATCGACGGGGACGCGCGAAAGGGAATCGCGGAGCTGAAGAAATCGGTGG
CAGCAGGCCAGATGGTCGGCGGCCCGGTCTGGCGCCTCGCGTTTCTCGTCTGGCAACTATTCCCCTCCCTGGCGAGGCCG
ATGCTGCGTTGGCGGAGACGGGCGCACAGTCGCGGCGGTTCAGGCGTGGGCGGATCGGCCATGTTCACCAGCTTCGTGGA
GATCGAGGGGTGA

Upstream 100 bases:

>100_bases
GAGAGAGAATCGGCGTTGTTTGCCGATTCGTCACTCCACTCACCGCGCAACCATCCGGCGTAAGCTATATGTTTACGCGC
TGCCGGGTAGACCCTGGGCC

Downstream 100 bases:

>100_bases
AGCGAACGCCGAACCCGCCAACAGGGAACACGGCTCCCGCCATGTCGGTCAGGGCGGCGGCCCTGTGGGCGCTTGTGTCT
CAATACCTTTCGTTCGCGAT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MNGRPPALSRIPEHPRVAVIVPAYGVAHLVGEALRSLQRQTLEEWECVVIDDGAPDDVTAAVAPFLDDRRIRFLATPNGG
VSAARNRAIAASSAPLIALLDGDDLFRPSYLETMVAVLEADAEARLATCNARIFGAVARERTCVERRQGSGDGTKGSLAD
VLDRSFNVYIGTTFRRADFERVGGFDTTMAQSEDFDLWVRLMMLGGHAHYVDAVLGDYRVRPGSASSNAGRMLLGNIKVY
EKARSLLAPDRPERELIERLIADNRASLDFEHAMDRIIDGDARKGIAELKKSVAAGQMVGGPVWRLAFLVWQLFPSLARP
MLRWRRRAHSRGGSGVGGSAMFTSFVEIEG

Sequences:

>Translated_350_residues
MNGRPPALSRIPEHPRVAVIVPAYGVAHLVGEALRSLQRQTLEEWECVVIDDGAPDDVTAAVAPFLDDRRIRFLATPNGG
VSAARNRAIAASSAPLIALLDGDDLFRPSYLETMVAVLEADAEARLATCNARIFGAVARERTCVERRQGSGDGTKGSLAD
VLDRSFNVYIGTTFRRADFERVGGFDTTMAQSEDFDLWVRLMMLGGHAHYVDAVLGDYRVRPGSASSNAGRMLLGNIKVY
EKARSLLAPDRPERELIERLIADNRASLDFEHAMDRIIDGDARKGIAELKKSVAAGQMVGGPVWRLAFLVWQLFPSLARP
MLRWRRRAHSRGGSGVGGSAMFTSFVEIEG
>Mature_350_residues
MNGRPPALSRIPEHPRVAVIVPAYGVAHLVGEALRSLQRQTLEEWECVVIDDGAPDDVTAAVAPFLDDRRIRFLATPNGG
VSAARNRAIAASSAPLIALLDGDDLFRPSYLETMVAVLEADAEARLATCNARIFGAVARERTCVERRQGSGDGTKGSLAD
VLDRSFNVYIGTTFRRADFERVGGFDTTMAQSEDFDLWVRLMMLGGHAHYVDAVLGDYRVRPGSASSNAGRMLLGNIKVY
EKARSLLAPDRPERELIERLIADNRASLDFEHAMDRIIDGDARKGIAELKKSVAAGQMVGGPVWRLAFLVWQLFPSLARP
MLRWRRRAHSRGGSGVGGSAMFTSFVEIEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38262; Mature: 38262

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGRPPALSRIPEHPRVAVIVPAYGVAHLVGEALRSLQRQTLEEWECVVIDDGAPDDVTA
CCCCCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHH
AVAPFLDDRRIRFLATPNGGVSAARNRAIAASSAPLIALLDGDDLFRPSYLETMVAVLEA
HHHHHCCCCCEEEEECCCCCCHHHHCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHC
DAEARLATCNARIFGAVARERTCVERRQGSGDGTKGSLADVLDRSFNVYIGTTFRRADFE
CCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEECEEECCCHH
RVGGFDTTMAQSEDFDLWVRLMMLGGHAHYVDAVLGDYRVRPGSASSNAGRMLLGNIKVY
HHCCCCCHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCEECCCCCCCCCCCEEECCHHHH
EKARSLLAPDRPERELIERLIADNRASLDFEHAMDRIIDGDARKGIAELKKSVAAGQMVG
HHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
GPVWRLAFLVWQLFPSLARPMLRWRRRAHSRGGSGVGGSAMFTSFVEIEG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEEECC
>Mature Secondary Structure
MNGRPPALSRIPEHPRVAVIVPAYGVAHLVGEALRSLQRQTLEEWECVVIDDGAPDDVTA
CCCCCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHH
AVAPFLDDRRIRFLATPNGGVSAARNRAIAASSAPLIALLDGDDLFRPSYLETMVAVLEA
HHHHHCCCCCEEEEECCCCCCHHHHCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHC
DAEARLATCNARIFGAVARERTCVERRQGSGDGTKGSLADVLDRSFNVYIGTTFRRADFE
CCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEECEEECCCHH
RVGGFDTTMAQSEDFDLWVRLMMLGGHAHYVDAVLGDYRVRPGSASSNAGRMLLGNIKVY
HHCCCCCHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCEECCCCCCCCCCCEEECCHHHH
EKARSLLAPDRPERELIERLIADNRASLDFEHAMDRIIDGDARKGIAELKKSVAAGQMVG
HHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
GPVWRLAFLVWQLFPSLARPMLRWRRRAHSRGGSGVGGSAMFTSFVEIEG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA