| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is yghU [H]
Identifier: 87200608
GI number: 87200608
Start: 2803495
End: 2804361
Strand: Direct
Name: yghU [H]
Synonym: Saro_2595
Alternate gene names: 87200608
Gene position: 2803495-2804361 (Clockwise)
Preceding gene: 87200606
Following gene: 87200609
Centisome position: 78.71
GC content: 63.44
Gene sequence:
>867_bases ATGTCCTCAGAGTACGTTCCCCCGAAGGTCTGGAAGTGGGACAAGGCCAACGGCGGCGCCTTCGCCAGCGTCAACCGCCC AGTCGCCGGCCCGACGAGCGAGCGCGAACTGCCGGTCGGCAAGCATCCTTTCCAGGTCTATTCGCTCGGCACGCCCAACG GGCAGAAGGCCACGATCATGCTGGAAGAACTGCTCCAGCTGGGCTTTTCCGAGGCCGAGTACGACGCCTGGCTGATCAAG ATCTTCGAAGGCGACCAGTTCACCAGCGGCTTCGTCGACATCAATCCGAACTCCAAGATCCCGGCCATGGTCGACCGCTC GGGCCCTGAACCGTTCCGCGTCTTCGAATCCGGCGCCATTCTGATGCACCTTGCTGAAAAGTTTGGCGTTTTCCTGCCAA CTTCCGGCCCCGCCCGCGCCGAGTGCCTATCCTGGCTGTTCTGGCAGGTCGGCTCCGCCCCGTTCATCGGCGGCGGCTTC GGCCACTTCTACAACTACGCCCCGATCAAGATCGAGTACGCGATCGATCGCTATGCCATGGAAACCAAGCGCCTTTTCGA CGTGGCCAACCGTCGCCTCGCGGAAAGCCGCTATCTTGCGGGGGACGAATACACGATCGCCGACCTTGCCACCTACACCT GGTTCGGCAACATCTACCGCGGCGAAGCCTACGGCGAGGCGGCGACCTTCCTGTCGATGCACGAATACGAACACGTCGGC CGCTGGGTCGGCGAGATCGACGCGAGGCCGGGGGTGCTGCGGGGGCGGTTGGTGAACTCCAGCAAGGGCCTGGCAGAGCG TCACGACGCGAGCGATTTCGACGCCCTCCCGCCGGAATCGTTGCAAGCGATCGTCAAGGGCTTCTGA
Upstream 100 bases:
>100_bases CTGTCCATCATCCACGCGAACGGACCGGAAGCCCTTGCGGTTCCGTGCCCAACGCTTCAATATAGTGTGCAACACTAACA ATATCCCCAAGGAGCAGGCG
Downstream 100 bases:
>100_bases ACCCGCCTCGAGACCGGCGAACGACACCTTGGGGACCCTCGTGTCACTTTAGGTGTCGTTCAGGTCACCCCTTTTCAACG CCGTTTCCCGCGCTATAAGC
Product: putative glutathione S-transferase YghU
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MSSEYVPPKVWKWDKANGGAFASVNRPVAGPTSERELPVGKHPFQVYSLGTPNGQKATIMLEELLQLGFSEAEYDAWLIK IFEGDQFTSGFVDINPNSKIPAMVDRSGPEPFRVFESGAILMHLAEKFGVFLPTSGPARAECLSWLFWQVGSAPFIGGGF GHFYNYAPIKIEYAIDRYAMETKRLFDVANRRLAESRYLAGDEYTIADLATYTWFGNIYRGEAYGEAATFLSMHEYEHVG RWVGEIDARPGVLRGRLVNSSKGLAERHDASDFDALPPESLQAIVKGF
Sequences:
>Translated_288_residues MSSEYVPPKVWKWDKANGGAFASVNRPVAGPTSERELPVGKHPFQVYSLGTPNGQKATIMLEELLQLGFSEAEYDAWLIK IFEGDQFTSGFVDINPNSKIPAMVDRSGPEPFRVFESGAILMHLAEKFGVFLPTSGPARAECLSWLFWQVGSAPFIGGGF GHFYNYAPIKIEYAIDRYAMETKRLFDVANRRLAESRYLAGDEYTIADLATYTWFGNIYRGEAYGEAATFLSMHEYEHVG RWVGEIDARPGVLRGRLVNSSKGLAERHDASDFDALPPESLQAIVKGF >Mature_287_residues SSEYVPPKVWKWDKANGGAFASVNRPVAGPTSERELPVGKHPFQVYSLGTPNGQKATIMLEELLQLGFSEAEYDAWLIKI FEGDQFTSGFVDINPNSKIPAMVDRSGPEPFRVFESGAILMHLAEKFGVFLPTSGPARAECLSWLFWQVGSAPFIGGGFG HFYNYAPIKIEYAIDRYAMETKRLFDVANRRLAESRYLAGDEYTIADLATYTWFGNIYRGEAYGEAATFLSMHEYEHVGR WVGEIDARPGVLRGRLVNSSKGLAERHDASDFDALPPESLQAIVKGF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GST N-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI87082195, Length=286, Percent_Identity=61.1888111888112, Blast_Score=370, Evalue=1e-104, Organism=Escherichia coli, GI1788640, Length=232, Percent_Identity=42.2413793103448, Blast_Score=152, Evalue=4e-38, Organism=Saccharomyces cerevisiae, GI6324100, Length=260, Percent_Identity=28.8461538461538, Blast_Score=92, Evalue=1e-19, Organism=Drosophila melanogaster, GI28571670, Length=177, Percent_Identity=25.9887005649718, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010987 - InterPro: IPR004045 - InterPro: IPR017933 - InterPro: IPR004046 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]
EC number: NA
Molecular weight: Translated: 32083; Mature: 31951
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSEYVPPKVWKWDKANGGAFASVNRPVAGPTSERELPVGKHPFQVYSLGTPNGQKATIM CCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHH LEELLQLGFSEAEYDAWLIKIFEGDQFTSGFVDINPNSKIPAMVDRSGPEPFRVFESGAI HHHHHHCCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCEEEECCCCCCEEHHCCCHH LMHLAEKFGVFLPTSGPARAECLSWLFWQVGSAPFIGGGFGHFYNYAPIKIEYAIDRYAM HHHHHHHCCEEECCCCCHHHHHHHHHHHHHCCCCEECCCHHHHCCCCCEEEEEEHHHHHH ETKRLFDVANRRLAESRYLAGDEYTIADLATYTWFGNIYRGEAYGEAATFLSMHEYEHVG HHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHH RWVGEIDARPGVLRGRLVNSSKGLAERHDASDFDALPPESLQAIVKGF HHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure SSEYVPPKVWKWDKANGGAFASVNRPVAGPTSERELPVGKHPFQVYSLGTPNGQKATIM CCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHH LEELLQLGFSEAEYDAWLIKIFEGDQFTSGFVDINPNSKIPAMVDRSGPEPFRVFESGAI HHHHHHCCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCEEEECCCCCCEEHHCCCHH LMHLAEKFGVFLPTSGPARAECLSWLFWQVGSAPFIGGGFGHFYNYAPIKIEYAIDRYAM HHHHHHHCCEEECCCCCHHHHHHHHHHHHHCCCCEECCCHHHHCCCCCEEEEEEHHHHHH ETKRLFDVANRRLAESRYLAGDEYTIADLATYTWFGNIYRGEAYGEAATFLSMHEYEHVG HHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHH RWVGEIDARPGVLRGRLVNSSKGLAERHDASDFDALPPESLQAIVKGF HHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]