| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200601
Identifier: 87200601
GI number: 87200601
Start: 2794095
End: 2795537
Strand: Direct
Name: 87200601
Synonym: Saro_2588
Alternate gene names: NA
Gene position: 2794095-2795537 (Clockwise)
Preceding gene: 87200597
Following gene: 87200603
Centisome position: 78.45
GC content: 66.74
Gene sequence:
>1443_bases GTGACGGGATCGAAGGCTTTCAGGGCGGCATTGGCGGCAAGCGTGTTCGTCGCTGCCCCGCAGATTGCACGGGCGGCGGA AGACCAGTCCGCCAGGATCGCCGATCTCCAGCGCCAGGTCGATGAACTCAAGGCCATGGTCCTCGCGCTCAAGGCCGCGC AGGGCGCCACGCCGGCCACCACCGCGGCCGCAGCTCCCGCAACCGCCCCGGCTGCCCCGGTTGCGGTGCAGCCCGTGCAG CTTGCCGCCGCGCCCGCCCCTTCCGCACCCCCGTCGGTGCCGGCTCCCGAGAAGAAGAAGGCCTGGTACGAAAAGCTCCA GCTCCGCGGTTACACCCAGCTTCGCGTGAACGAGATCGTCTCCGGCCCGAAGAGCGCGCCCTCGGGCATCTCGCGCCTGC GTTCGGTGCAGGACAGCGGCATCAACGATACCGGCAACTTCTCGATCCGCCGTGCCCGCCTTGTCGTCCAGGGCGACATT TCCAACCGCGTTTCGCTCTACATGCAGGGCGATCTTTCGGCGGCGGTCAACAACCAGTCCGGCACCGAGCCGCGCCAGCA CTTCTTCCAGATGCGCGATGCATATGCCGACGTGTTCCTCGACAAGAAGAAGACGCTCAAGCTGCGCCTTGGCCAGTCCA AGGTTCCGTTCGGCTGGGAGAACCTCCAAAGCTCGTCGAACCGCATCCCGCTAGACCGCACCGATGCGATCAACGCGCCC GTCCCGGGCGAGCGCGACCTCGGCGCGGTCCTCTATTACACTCCGCTGCGCGTCCAGAAGATCTGGGACGAACTGTCGCA CGACGGGCAGAAGCTGTTCGGCAACTACGGCGCCTTCGCGCTGGGCGTGTTCAACGGCCAGGGCACCAACCGCACCGAAC GCACCGGCGGCCTGATGACCGTTGCCATGGCGACGATGCCCTTCCGCCTCGACGGCCTCGGCCTCGACGGGCAGGTCGCC GAATTCGGCTTCACCGCGATGCGCAACCAGGTCCGGCCCGAAGTACGGTCCGGCGGCGTTTCGACGCTGTCCTATGACGA CAACCATGTCAGCGTGCACGGCATGATCTATCCGCGCCCGTTCGGCATCCAGTCGGAATGGACCTGGGGCAAGGGTCCGC AATGGGATGCGGCGACGTCCTCGATCCAGGCAAAGCGTGCGACCGGCGGCTATGTCATGGCGATGTACCGCATGCCCGAA ACGCCCGTGGGCCAGGTCATCCCTTTCGCGCGCTGGCAGAAGTACCGTGGCGGCTGGAAGGGCGCGACCAACGCGCCCCG GCTGGAGACCGACGAATACGAGGTTGGCGTCGAATGGCTTCCGCTCAAGGAACTCGAAGTCACGCTCGGCTATGCCAACG TCCACCGCAACGAGGCCGACGAACGGCGCACGGGCCGCGCCAAGGGCGATCTGGTGCGCGCGCAGGTGCAGTGGAACTAC TGA
Upstream 100 bases:
>100_bases CATCGCCTTGTGACGGCTCCGTCACCCGTCAATTTCGTGTCACATATTCGTCATTTTGCGGCCCTAGCCGAAACGCATTC GCAAACGACGGAGCAGGGCA
Downstream 100 bases:
>100_bases CCGGGACGGCAGCGCCGCGCGGTTGCCGCGCGGCGCCGACCGCCTGACCGGTCAGGATGCCGCCAGCACGCTCGAAAGAC GGAACAGCGTCTGCGCCGTG
Product: phosphate-selective porin O and P
Products: NA
Alternate protein names: Phosphate-Selective Porin
Number of amino acids: Translated: 480; Mature: 479
Protein sequence:
>480_residues MTGSKAFRAALAASVFVAAPQIARAAEDQSARIADLQRQVDELKAMVLALKAAQGATPATTAAAAPATAPAAPVAVQPVQ LAAAPAPSAPPSVPAPEKKKAWYEKLQLRGYTQLRVNEIVSGPKSAPSGISRLRSVQDSGINDTGNFSIRRARLVVQGDI SNRVSLYMQGDLSAAVNNQSGTEPRQHFFQMRDAYADVFLDKKKTLKLRLGQSKVPFGWENLQSSSNRIPLDRTDAINAP VPGERDLGAVLYYTPLRVQKIWDELSHDGQKLFGNYGAFALGVFNGQGTNRTERTGGLMTVAMATMPFRLDGLGLDGQVA EFGFTAMRNQVRPEVRSGGVSTLSYDDNHVSVHGMIYPRPFGIQSEWTWGKGPQWDAATSSIQAKRATGGYVMAMYRMPE TPVGQVIPFARWQKYRGGWKGATNAPRLETDEYEVGVEWLPLKELEVTLGYANVHRNEADERRTGRAKGDLVRAQVQWNY
Sequences:
>Translated_480_residues MTGSKAFRAALAASVFVAAPQIARAAEDQSARIADLQRQVDELKAMVLALKAAQGATPATTAAAAPATAPAAPVAVQPVQ LAAAPAPSAPPSVPAPEKKKAWYEKLQLRGYTQLRVNEIVSGPKSAPSGISRLRSVQDSGINDTGNFSIRRARLVVQGDI SNRVSLYMQGDLSAAVNNQSGTEPRQHFFQMRDAYADVFLDKKKTLKLRLGQSKVPFGWENLQSSSNRIPLDRTDAINAP VPGERDLGAVLYYTPLRVQKIWDELSHDGQKLFGNYGAFALGVFNGQGTNRTERTGGLMTVAMATMPFRLDGLGLDGQVA EFGFTAMRNQVRPEVRSGGVSTLSYDDNHVSVHGMIYPRPFGIQSEWTWGKGPQWDAATSSIQAKRATGGYVMAMYRMPE TPVGQVIPFARWQKYRGGWKGATNAPRLETDEYEVGVEWLPLKELEVTLGYANVHRNEADERRTGRAKGDLVRAQVQWNY >Mature_479_residues TGSKAFRAALAASVFVAAPQIARAAEDQSARIADLQRQVDELKAMVLALKAAQGATPATTAAAAPATAPAAPVAVQPVQL AAAPAPSAPPSVPAPEKKKAWYEKLQLRGYTQLRVNEIVSGPKSAPSGISRLRSVQDSGINDTGNFSIRRARLVVQGDIS NRVSLYMQGDLSAAVNNQSGTEPRQHFFQMRDAYADVFLDKKKTLKLRLGQSKVPFGWENLQSSSNRIPLDRTDAINAPV PGERDLGAVLYYTPLRVQKIWDELSHDGQKLFGNYGAFALGVFNGQGTNRTERTGGLMTVAMATMPFRLDGLGLDGQVAE FGFTAMRNQVRPEVRSGGVSTLSYDDNHVSVHGMIYPRPFGIQSEWTWGKGPQWDAATSSIQAKRATGGYVMAMYRMPET PVGQVIPFARWQKYRGGWKGATNAPRLETDEYEVGVEWLPLKELEVTLGYANVHRNEADERRTGRAKGDLVRAQVQWNY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52406; Mature: 52275
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGSKAFRAALAASVFVAAPQIARAAEDQSARIADLQRQVDELKAMVLALKAAQGATPAT CCCHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TAAAAPATAPAAPVAVQPVQLAAAPAPSAPPSVPAPEKKKAWYEKLQLRGYTQLRVNEIV HHCCCCCCCCCCCEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHEEHHHHH SGPKSAPSGISRLRSVQDSGINDTGNFSIRRARLVVQGDISNRVSLYMQGDLSAAVNNQS CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCEEECCCC GTEPRQHFFQMRDAYADVFLDKKKTLKLRLGQSKVPFGWENLQSSSNRIPLDRTDAINAP CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCC VPGERDLGAVLYYTPLRVQKIWDELSHDGQKLFGNYGAFALGVFNGQGTNRTERTGGLMT CCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEEECCCCCCCCHHCCCEEE VAMATMPFRLDGLGLDGQVAEFGFTAMRNQVRPEVRSGGVSTLSYDDNHVSVHGMIYPRP EEEHHCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHCCCCEEEEECCCEEEEEEEEECCC FGIQSEWTWGKGPQWDAATSSIQAKRATGGYVMAMYRMPETPVGQVIPFARWQKYRGGWK CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHCCCHHHHHHHCCCCC GATNAPRLETDEYEVGVEWLPLKELEVTLGYANVHRNEADERRTGRAKGDLVRAQVQWNY CCCCCCCCCCCCEECCEEEEEEEHEEEEEEEHHHHCCCHHHHHCCCCCCCEEEEEEEECC >Mature Secondary Structure TGSKAFRAALAASVFVAAPQIARAAEDQSARIADLQRQVDELKAMVLALKAAQGATPAT CCHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TAAAAPATAPAAPVAVQPVQLAAAPAPSAPPSVPAPEKKKAWYEKLQLRGYTQLRVNEIV HHCCCCCCCCCCCEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHEEHHHHH SGPKSAPSGISRLRSVQDSGINDTGNFSIRRARLVVQGDISNRVSLYMQGDLSAAVNNQS CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCEEECCCC GTEPRQHFFQMRDAYADVFLDKKKTLKLRLGQSKVPFGWENLQSSSNRIPLDRTDAINAP CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCC VPGERDLGAVLYYTPLRVQKIWDELSHDGQKLFGNYGAFALGVFNGQGTNRTERTGGLMT CCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEEECCCCCCCCHHCCCEEE VAMATMPFRLDGLGLDGQVAEFGFTAMRNQVRPEVRSGGVSTLSYDDNHVSVHGMIYPRP EEEHHCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHCCCCEEEEECCCEEEEEEEEECCC FGIQSEWTWGKGPQWDAATSSIQAKRATGGYVMAMYRMPETPVGQVIPFARWQKYRGGWK CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHCCCHHHHHHHCCCCC GATNAPRLETDEYEVGVEWLPLKELEVTLGYANVHRNEADERRTGRAKGDLVRAQVQWNY CCCCCCCCCCCCEECCEEEEEEEHEEEEEEEHHHHCCCHHHHHCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA