| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is exuT [H]
Identifier: 87200461
GI number: 87200461
Start: 2637286
End: 2638515
Strand: Reverse
Name: exuT [H]
Synonym: Saro_2448
Alternate gene names: 87200461
Gene position: 2638515-2637286 (Counterclockwise)
Preceding gene: 87200463
Following gene: 87200459
Centisome position: 74.08
GC content: 64.96
Gene sequence:
>1230_bases ATGACGGACGGTCGGAAAGGCGGGATCACCCGCGGGGCTGCGGTGGCGCTGGTCGCGCTGCTGTTCCTCGGCAACGCGCT CAACTACGTGGATCGGCAGGTGCTCGCCCTGCTCAAGCCCACGCTCGAGGCGGAGTTCGGCTGGACCGATGCCGACTATG CCCATCTCGGCTCCTCGTTCCAGATCGCTGCGGCCGGTACGCTCCTGTTCGTCGGCTGGTTCGTCGACAGGCTCGGCGTG CGCATCGCCTATGCTGTGGCGGTCACGGTGTGGAGTGCGGCCGGCATGGCCCACGCTCTCGCGCAGACCGTGCAGCAGTT CGTCACCGCCCGCATTGTGCTGGCTGCCGGCGAGTCTGTCAGCACTCCTGCCGGGCTCAAGGCTGCGGCAACCTATCTTC CTGTCAGGCAAAGAAATTTCGCCATCGGCCTGATAAATACCGCGCCAAACATCGGCGCGATCCTCACGCCGCTTTTGATT CCGCCCTTTGCGCTTGCGTTTGGCTGGAAGGCTGCGTTCGTCGTGACCGGGGCGCTGGGCTTCCTGTGGCTCGCTGGCTG GTGGTTCGGCACTCGCGGTCTCCAGCCTGTCGGCAATGTACCCGAGCGCGCCCGCGTGCCATGGGGCGAGTTGCTGTCCG ATCGCCGCACCTGGACCGTCATTGGTGCCAAGTTCTGCACGGATGCCGTCTGGTGGTTCGTGCTGTTCTGGATGCCCGAC TTCTTCAACCGCCAGTTCGGTCTCAGCCAGGGGCAACTTGGCTGGCCCATCGCGATCATTTTCACCCTTGCGGCATTGGG GGCGCTGACGTCGGGTGGCCTCTACCCGATCCTGCTGGCGCGCGGGATGAGCGTGAACGCCGCGCGCAAGACCTCGATGC TGTTCTACGCGCTGGTCGTCCTTGCGATGCCGCTGTCGCTCCAGACTGGCAACCCCTGGCTCGCCGCCGTTCTCATCGGC CTCGGCCTTTTTGCGCATCAGGGTTTCTCCACGAATGTCTTCGGCATGACCGCCGACATCGTTCCTGCCACCCGCGTCGC CAGCGTGATCGCGCTCGGTGCGATCGCCGGCAATCTTTCGGGAACTGGCATCATCGAGTTCGCCGGCTGGTCGCTGACCA ACGGCCTCGGTTACGTCCCGATGTTCGCGATCTGCGGCAGCGCCTATCTGGTTGCGCTGGCGTTCATCCACCTGATGCTG CCGAAGCTGCAACTGTCGGCGGGAGAGTAG
Upstream 100 bases:
>100_bases TGTGTCCTACGGTGTCATATAATGCTTCCCTTACGCTCCCGGTCGGCTATCGTGCAAGCGGGAAGCGGTGCAAAAGCACT GTTCCGTGGGAGAAAGTGCA
Downstream 100 bases:
>100_bases CGGAGCCGACGGCCGCCCTGCGCCCCCGCGAAGGCGGGGGCCTTGGTCTCGGCACTGAACTCCGCCAGAACTTCCGAAAA CTCCCGCCTGCAAAGGCGAA
Product: major facilitator transporter
Products: galacturonate [Cytoplasm]; Proton [Cytoplasm]; glucuronate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MTDGRKGGITRGAAVALVALLFLGNALNYVDRQVLALLKPTLEAEFGWTDADYAHLGSSFQIAAAGTLLFVGWFVDRLGV RIAYAVAVTVWSAAGMAHALAQTVQQFVTARIVLAAGESVSTPAGLKAAATYLPVRQRNFAIGLINTAPNIGAILTPLLI PPFALAFGWKAAFVVTGALGFLWLAGWWFGTRGLQPVGNVPERARVPWGELLSDRRTWTVIGAKFCTDAVWWFVLFWMPD FFNRQFGLSQGQLGWPIAIIFTLAALGALTSGGLYPILLARGMSVNAARKTSMLFYALVVLAMPLSLQTGNPWLAAVLIG LGLFAHQGFSTNVFGMTADIVPATRVASVIALGAIAGNLSGTGIIEFAGWSLTNGLGYVPMFAICGSAYLVALAFIHLML PKLQLSAGE
Sequences:
>Translated_409_residues MTDGRKGGITRGAAVALVALLFLGNALNYVDRQVLALLKPTLEAEFGWTDADYAHLGSSFQIAAAGTLLFVGWFVDRLGV RIAYAVAVTVWSAAGMAHALAQTVQQFVTARIVLAAGESVSTPAGLKAAATYLPVRQRNFAIGLINTAPNIGAILTPLLI PPFALAFGWKAAFVVTGALGFLWLAGWWFGTRGLQPVGNVPERARVPWGELLSDRRTWTVIGAKFCTDAVWWFVLFWMPD FFNRQFGLSQGQLGWPIAIIFTLAALGALTSGGLYPILLARGMSVNAARKTSMLFYALVVLAMPLSLQTGNPWLAAVLIG LGLFAHQGFSTNVFGMTADIVPATRVASVIALGAIAGNLSGTGIIEFAGWSLTNGLGYVPMFAICGSAYLVALAFIHLML PKLQLSAGE >Mature_408_residues TDGRKGGITRGAAVALVALLFLGNALNYVDRQVLALLKPTLEAEFGWTDADYAHLGSSFQIAAAGTLLFVGWFVDRLGVR IAYAVAVTVWSAAGMAHALAQTVQQFVTARIVLAAGESVSTPAGLKAAATYLPVRQRNFAIGLINTAPNIGAILTPLLIP PFALAFGWKAAFVVTGALGFLWLAGWWFGTRGLQPVGNVPERARVPWGELLSDRRTWTVIGAKFCTDAVWWFVLFWMPDF FNRQFGLSQGQLGWPIAIIFTLAALGALTSGGLYPILLARGMSVNAARKTSMLFYALVVLAMPLSLQTGNPWLAAVLIGL GLFAHQGFSTNVFGMTADIVPATRVASVIALGAIAGNLSGTGIIEFAGWSLTNGLGYVPMFAICGSAYLVALAFIHLMLP KLQLSAGE
Specific function: Aldohexuronate transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Homo sapiens, GI154350196, Length=340, Percent_Identity=22.0588235294118, Blast_Score=69, Evalue=6e-12, Organism=Escherichia coli, GI2367193, Length=388, Percent_Identity=26.2886597938144, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI87082320, Length=411, Percent_Identity=26.0340632603406, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI2367379, Length=417, Percent_Identity=26.1390887290168, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1789515, Length=398, Percent_Identity=22.1105527638191, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1789152, Length=380, Percent_Identity=22.1052631578947, Blast_Score=83, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004744 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 43406; Mature: 43275
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDGRKGGITRGAAVALVALLFLGNALNYVDRQVLALLKPTLEAEFGWTDADYAHLGSSF CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCE QIAAAGTLLFVGWFVDRLGVRIAYAVAVTVWSAAGMAHALAQTVQQFVTARIVLAAGESV EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC STPAGLKAAATYLPVRQRNFAIGLINTAPNIGAILTPLLIPPFALAFGWKAAFVVTGALG CCCCCHHHHHHHCCEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH FLWLAGWWFGTRGLQPVGNVPERARVPWGELLSDRRTWTVIGAKFCTDAVWWFVLFWMPD HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHH FFNRQFGLSQGQLGWPIAIIFTLAALGALTSGGLYPILLARGMSVNAARKTSMLFYALVV HHCHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH LAMPLSLQTGNPWLAAVLIGLGLFAHQGFSTNVFGMTADIVPATRVASVIALGAIAGNLS HHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCC GTGIIEFAGWSLTNGLGYVPMFAICGSAYLVALAFIHLMLPKLQLSAGE CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TDGRKGGITRGAAVALVALLFLGNALNYVDRQVLALLKPTLEAEFGWTDADYAHLGSSF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCE QIAAAGTLLFVGWFVDRLGVRIAYAVAVTVWSAAGMAHALAQTVQQFVTARIVLAAGESV EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC STPAGLKAAATYLPVRQRNFAIGLINTAPNIGAILTPLLIPPFALAFGWKAAFVVTGALG CCCCCHHHHHHHCCEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH FLWLAGWWFGTRGLQPVGNVPERARVPWGELLSDRRTWTVIGAKFCTDAVWWFVLFWMPD HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHH FFNRQFGLSQGQLGWPIAIIFTLAALGALTSGGLYPILLARGMSVNAARKTSMLFYALVV HHCHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH LAMPLSLQTGNPWLAAVLIGLGLFAHQGFSTNVFGMTADIVPATRVASVIALGAIAGNLS HHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCC GTGIIEFAGWSLTNGLGYVPMFAICGSAYLVALAFIHLMLPKLQLSAGE CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: galacturonate [Periplasm]; Proton [Periplasm]; glucuronate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + galacturonate [Periplasm] = galacturonate [Cytoplasm] + Proton [Cytoplasm] Proton [Periplasm] + glucuronate [Periplasm] = Proton [Cytoplasm] + glucuronate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]