| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87200367
Identifier: 87200367
GI number: 87200367
Start: 2500513
End: 2501571
Strand: Direct
Name: 87200367
Synonym: Saro_2353
Alternate gene names: NA
Gene position: 2500513-2501571 (Clockwise)
Preceding gene: 87200365
Following gene: 87200368
Centisome position: 70.21
GC content: 68.18
Gene sequence:
>1059_bases ATGTCCGGCAAGTCAATTTTCAGGACCAGTGCGCTCGCCGCACTTGCCGTCGCGATGTCGGCGGCGGCCATTCCAACATC TGCAATGGCAGAGCCGCAGCGCAGCGAAGAGCGCGGCGGTCGCTGGGGCGGCGGTGACCGTGGTGGCGATCGTGGGGGCG ACCGCGGCGGTGAATTCCGTGGCCGCGCGCAGGGCCAGGCCCAGACGCAGGCCCAGCCGCAGCAGCGCTCAGGCTGGGGC GGCGGTCAGCAACAGGCGCGTCCGGAACGCAGCGCACCTGCATGGCAGGGCCGGGGCAACGCGGACAATGCGCCGCGCTG GGGTTCGCAGGATCGCAGCGGCGGCCAGCGCCCGGGCCGTGACTGGCAATCGGGCACGGTGACGCGCCCTGCACCCTCAG CGCGTGCAGCAACTCCCGCCACTCCGCAGCGCGGCTGGGACGGCACCCGCTGGAACCCGACCAATCCGGATCGCAACACG GGCCGCGACTGGAATCGCAACCGCGACCGCAATGACGGCCGCGAATGGTCCAACCGCGACCGCGACAATCGCGATGGCCG CGGCACCACCTGGGGCGGCCGCAACGATGGCCGGCGCGATTATCGCAACGGCGACAGCTGGCGCAGCGGAGATAGCTGGC GCAGCGGAGATAGCTGGCGTAGCGGAGATAGCTGGCGGCGCGACAACGATCGCCGGGATGGGCGGGATCGCCGGGATGGG TGGCGCGGCGACCGACGCGATGACCACCGCCGGTGGAGCAACGACTGGCGCCGCGACAACCGCTACAACTGGTACGGCTA TCGCGACAGCCACCGCCACGTCTACCGGATGCCGCGCTATTATGCGCCGTACCGGGGCTACAACTACAGCCGCCTGTCGA TCGGGATATTCCTGAATTCGGGCTTCTATGGCAGCAGCTACTGGATCAACGATCCATGGTCTTATCGCCTGCCCCCAGCC TACGGTCCGTATCGCTGGGTGCGCTACTACGATGACGTGCTGCTGGTCGACACCTACTCCGGCGAAGTGGTGGACGTGAT CTACGACTTCTTCTGGTAA
Upstream 100 bases:
>100_bases ACCTGGTTCAGCCACCCGACAGCGCGACTCGATTATTACGAACATATTAAAGCCGCGAAAGGTTCTTGCGGCTCGCTCAT TCGGGAAAGGGTCGGCCATC
Downstream 100 bases:
>100_bases GCCGACGTCGATCCCTGTTGCCTTGGCCTCCGTGCTTCATGCACGGGGGCTTTGGCCCATCCGGCCTGCCGGCCACAAGA AATCCTCAACGGATCAGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MSGKSIFRTSALAALAVAMSAAAIPTSAMAEPQRSEERGGRWGGGDRGGDRGGDRGGEFRGRAQGQAQTQAQPQQRSGWG GGQQQARPERSAPAWQGRGNADNAPRWGSQDRSGGQRPGRDWQSGTVTRPAPSARAATPATPQRGWDGTRWNPTNPDRNT GRDWNRNRDRNDGREWSNRDRDNRDGRGTTWGGRNDGRRDYRNGDSWRSGDSWRSGDSWRSGDSWRRDNDRRDGRDRRDG WRGDRRDDHRRWSNDWRRDNRYNWYGYRDSHRHVYRMPRYYAPYRGYNYSRLSIGIFLNSGFYGSSYWINDPWSYRLPPA YGPYRWVRYYDDVLLVDTYSGEVVDVIYDFFW
Sequences:
>Translated_352_residues MSGKSIFRTSALAALAVAMSAAAIPTSAMAEPQRSEERGGRWGGGDRGGDRGGDRGGEFRGRAQGQAQTQAQPQQRSGWG GGQQQARPERSAPAWQGRGNADNAPRWGSQDRSGGQRPGRDWQSGTVTRPAPSARAATPATPQRGWDGTRWNPTNPDRNT GRDWNRNRDRNDGREWSNRDRDNRDGRGTTWGGRNDGRRDYRNGDSWRSGDSWRSGDSWRSGDSWRRDNDRRDGRDRRDG WRGDRRDDHRRWSNDWRRDNRYNWYGYRDSHRHVYRMPRYYAPYRGYNYSRLSIGIFLNSGFYGSSYWINDPWSYRLPPA YGPYRWVRYYDDVLLVDTYSGEVVDVIYDFFW >Mature_351_residues SGKSIFRTSALAALAVAMSAAAIPTSAMAEPQRSEERGGRWGGGDRGGDRGGDRGGEFRGRAQGQAQTQAQPQQRSGWGG GQQQARPERSAPAWQGRGNADNAPRWGSQDRSGGQRPGRDWQSGTVTRPAPSARAATPATPQRGWDGTRWNPTNPDRNTG RDWNRNRDRNDGREWSNRDRDNRDGRGTTWGGRNDGRRDYRNGDSWRSGDSWRSGDSWRSGDSWRRDNDRRDGRDRRDGW RGDRRDDHRRWSNDWRRDNRYNWYGYRDSHRHVYRMPRYYAPYRGYNYSRLSIGIFLNSGFYGSSYWINDPWSYRLPPAY GPYRWVRYYDDVLLVDTYSGEVVDVIYDFFW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40790; Mature: 40659
Theoretical pI: Translated: 10.85; Mature: 10.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGKSIFRTSALAALAVAMSAAAIPTSAMAEPQRSEERGGRWGGGDRGGDRGGDRGGEFR CCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC GRAQGQAQTQAQPQQRSGWGGGQQQARPERSAPAWQGRGNADNAPRWGSQDRSGGQRPGR CCCCCCHHHHCCCHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DWQSGTVTRPAPSARAATPATPQRGWDGTRWNPTNPDRNTGRDWNRNRDRNDGREWSNRD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC RDNRDGRGTTWGGRNDGRRDYRNGDSWRSGDSWRSGDSWRSGDSWRRDNDRRDGRDRRDG CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC WRGDRRDDHRRWSNDWRRDNRYNWYGYRDSHRHVYRMPRYYAPYRGYNYSRLSIGIFLNS CCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCHHHHCCCHHCCCCCCCCCEEEEEEEEEC GFYGSSYWINDPWSYRLPPAYGPYRWVRYYDDVLLVDTYSGEVVDVIYDFFW CCCCCCCEECCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCHHHHHHHHHC >Mature Secondary Structure SGKSIFRTSALAALAVAMSAAAIPTSAMAEPQRSEERGGRWGGGDRGGDRGGDRGGEFR CCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC GRAQGQAQTQAQPQQRSGWGGGQQQARPERSAPAWQGRGNADNAPRWGSQDRSGGQRPGR CCCCCCHHHHCCCHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DWQSGTVTRPAPSARAATPATPQRGWDGTRWNPTNPDRNTGRDWNRNRDRNDGREWSNRD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC RDNRDGRGTTWGGRNDGRRDYRNGDSWRSGDSWRSGDSWRSGDSWRRDNDRRDGRDRRDG CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC WRGDRRDDHRRWSNDWRRDNRYNWYGYRDSHRHVYRMPRYYAPYRGYNYSRLSIGIFLNS CCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCHHHHCCCHHCCCCCCCCCEEEEEEEEEC GFYGSSYWINDPWSYRLPPAYGPYRWVRYYDDVLLVDTYSGEVVDVIYDFFW CCCCCCCEECCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA