| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200353
Identifier: 87200353
GI number: 87200353
Start: 2487195
End: 2488199
Strand: Direct
Name: 87200353
Synonym: Saro_2339
Alternate gene names: NA
Gene position: 2487195-2488199 (Clockwise)
Preceding gene: 87200339
Following gene: 87200354
Centisome position: 69.83
GC content: 66.87
Gene sequence:
>1005_bases TTGAACGTCTATCACGCCAGTCTCGAGGAAGCGCAAGCCGACCCGCGCCTGAAGGGGTTGCAAGGCGCCTCGCCGTTCGA GCGGCTGGACTGGCTGGCGCTGCTGGCGAACGAATGCCTCGACCCGGCGCGGGCGCGCCTGAGCGTGGTCACCAGCGGCG AGTGCATGGCCGCGCTCCCCTGGATCGAGCGCGAGGGACGGATCGACGCGCTGGCCAACTGGTACAGCTTTTTTGTTTCT CCTCTTGGCGATAGCGCTCTTCTTTCACGGATAGTCGAGGCGCTTCCGCACGGGCGCGCCGCGTTCGCGCCACTGCCCGA GGAAGATGCGCGCCTGCTTGCCCGCGCCTTTCGGAACGCGGGGTGGTGTACGCTCGCGGCGCCTTGCGACGTCAACCATG TGCTTCCGGTCGAGGGGCGGTCCTTCGCCCAATACTGGGCCGAGCGTCCGGGCGCGCTGCGCGAGACGGTGCGTCGCAAG AGCCGCAAGGGCGAAGTATCCTTGCGCATCTTGACCGAATTTTCTCCCGAAGATTGGGAGGCTTACGAGACGATCTACAG GCTGAGCTGGAAGCCGGGCGAAGGCAGCCCGGCATTCCTGCGCAAATGGGCCGAAGCCGATGGCGAGGCGGGGCGGCTGC GGCTCGGCATTGCCGAAATCGACGGAGCGGCAGTGGCCGCGCAGTTCTGGACCGTCGAGGGTGGCACGGCCTACATCCAC AAGCTCGCCCACGACGAACGCTTCCGAAAATCCTCGCCCGGGACGCTCCTGACGGCCGCGATGTTCGAACACGTGATCGA CCGCGACCGCGTGGACCTGATCGATTTCGGGACAGGAGACGATCCCTACAAGCGCGACTGGATGGACGACGTGCGCTCGC GCTGGAGCGTGCAGGCCTGGCGTCCGGGCGCAGTGCGGCACTGGCCCTCGCTGGCCCTGGCGCTGGCCCGGACACTGGCC GGGCAGATCATGCGGCCTCTTGTGTCGCGAAATGGCGATGGTTAA
Upstream 100 bases:
>100_bases GGCGCCCCCCGCTCTCCGCGAAGGGCAAGATGATCGAGCGGATGGACGGTGGGATCGGGCTCGGCGGTCACGCAGGTCTC GACTAAGGAATGCTGGAACG
Downstream 100 bases:
>100_bases GGGCTGACCCGAACGACACCTAAAAGCACCTAGCGCCACCTAACCACACCCGGGGCCCGATGACCGACACCGACAGCACC CTGCGCGATATCCTGAAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 334; Mature: 334
Protein sequence:
>334_residues MNVYHASLEEAQADPRLKGLQGASPFERLDWLALLANECLDPARARLSVVTSGECMAALPWIEREGRIDALANWYSFFVS PLGDSALLSRIVEALPHGRAAFAPLPEEDARLLARAFRNAGWCTLAAPCDVNHVLPVEGRSFAQYWAERPGALRETVRRK SRKGEVSLRILTEFSPEDWEAYETIYRLSWKPGEGSPAFLRKWAEADGEAGRLRLGIAEIDGAAVAAQFWTVEGGTAYIH KLAHDERFRKSSPGTLLTAAMFEHVIDRDRVDLIDFGTGDDPYKRDWMDDVRSRWSVQAWRPGAVRHWPSLALALARTLA GQIMRPLVSRNGDG
Sequences:
>Translated_334_residues MNVYHASLEEAQADPRLKGLQGASPFERLDWLALLANECLDPARARLSVVTSGECMAALPWIEREGRIDALANWYSFFVS PLGDSALLSRIVEALPHGRAAFAPLPEEDARLLARAFRNAGWCTLAAPCDVNHVLPVEGRSFAQYWAERPGALRETVRRK SRKGEVSLRILTEFSPEDWEAYETIYRLSWKPGEGSPAFLRKWAEADGEAGRLRLGIAEIDGAAVAAQFWTVEGGTAYIH KLAHDERFRKSSPGTLLTAAMFEHVIDRDRVDLIDFGTGDDPYKRDWMDDVRSRWSVQAWRPGAVRHWPSLALALARTLA GQIMRPLVSRNGDG >Mature_334_residues MNVYHASLEEAQADPRLKGLQGASPFERLDWLALLANECLDPARARLSVVTSGECMAALPWIEREGRIDALANWYSFFVS PLGDSALLSRIVEALPHGRAAFAPLPEEDARLLARAFRNAGWCTLAAPCDVNHVLPVEGRSFAQYWAERPGALRETVRRK SRKGEVSLRILTEFSPEDWEAYETIYRLSWKPGEGSPAFLRKWAEADGEAGRLRLGIAEIDGAAVAAQFWTVEGGTAYIH KLAHDERFRKSSPGTLLTAAMFEHVIDRDRVDLIDFGTGDDPYKRDWMDDVRSRWSVQAWRPGAVRHWPSLALALARTLA GQIMRPLVSRNGDG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37308; Mature: 37308
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVYHASLEEAQADPRLKGLQGASPFERLDWLALLANECLDPARARLSVVTSGECMAALP CCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHEEEEECCCHHHHCC WIEREGRIDALANWYSFFVSPLGDSALLSRIVEALPHGRAAFAPLPEEDARLLARAFRNA CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC GWCTLAAPCDVNHVLPVEGRSFAQYWAERPGALRETVRRKSRKGEVSLRILTEFSPEDWE CCEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHH AYETIYRLSWKPGEGSPAFLRKWAEADGEAGRLRLGIAEIDGAAVAAQFWTVEGGTAYIH HHHHHHHEECCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHHH KLAHDERFRKSSPGTLLTAAMFEHVIDRDRVDLIDFGTGDDPYKRDWMDDVRSRWSVQAW HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCC RPGAVRHWPSLALALARTLAGQIMRPLVSRNGDG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNVYHASLEEAQADPRLKGLQGASPFERLDWLALLANECLDPARARLSVVTSGECMAALP CCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHEEEEECCCHHHHCC WIEREGRIDALANWYSFFVSPLGDSALLSRIVEALPHGRAAFAPLPEEDARLLARAFRNA CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC GWCTLAAPCDVNHVLPVEGRSFAQYWAERPGALRETVRRKSRKGEVSLRILTEFSPEDWE CCEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHH AYETIYRLSWKPGEGSPAFLRKWAEADGEAGRLRLGIAEIDGAAVAAQFWTVEGGTAYIH HHHHHHHEECCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHHH KLAHDERFRKSSPGTLLTAAMFEHVIDRDRVDLIDFGTGDDPYKRDWMDDVRSRWSVQAW HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCC RPGAVRHWPSLALALARTLAGQIMRPLVSRNGDG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA