| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200287
Identifier: 87200287
GI number: 87200287
Start: 2411985
End: 2413355
Strand: Reverse
Name: 87200287
Synonym: Saro_2273
Alternate gene names: NA
Gene position: 2413355-2411985 (Counterclockwise)
Preceding gene: 87200296
Following gene: 87200286
Centisome position: 67.76
GC content: 66.45
Gene sequence:
>1371_bases ATGGCCAGAAATTGCCGGCGAGTGCATTTGCGCACGATCGGCGGCACGATCCAGGCCCATATGGTCGCATCGATTCAACA ACCGGCAACCGGACCGGTGTCCTGCAAGGAGGACGGAGCAATGCGCAACAAGACCAAGGGTTTGGTATTCACAAGTACGG TGCTGGCGGCGGTCGGCGCTGCGGGCACGTGGGCACAGCAGGCAAGCGCGCCCATCGCCCGTTACGAAATGCGCGCCGAA ACCATGTCCGGCCTTGGCGGAATGGGTGGCGGCGGGGGCGGTGTCGGCGCCGCGATGTCGATGGCGTTCGGCGGCGCGCC CAAGGCGCAGCACATGCTGTGGCTCGACCTTGGCTCCAGCCGTGCGGCCGCCGATGGCAAGCCGCGCGCGGAGCATTTCA TGCCCGCTGGCGCAAAGCTTGGAAAATCGGTCCTTCTCAAGACTCCGGTTACCAAGCCCTCGGAACCAGGGGCGGCCGAG TTCCAGCGTCCCAAGGGGCGGATGCTGATCTTCTGGGGCTGCGGCGAACACGCGCCCAAGGGCCAGCCGGTCGTCATCGA TTTCAGCAAGCTTGCCGCCGGGCAGGTGCCTCCGGGCCTCTTTACTTCCGCCGTGCCGATGGACCGTTGGGTCTCGCCGT CATCGAGCCGCACTTACGGGTATTGGCCAGGCGAGGATGGCAAGTCGGCAAAGCCCGATTCCTCGCTGCTTGGTGCGCAC AAGGTGGCAGGCAACTATTCGCCCGACATCGCCTTCACGCTGGCGAAGGACTTCATGGCGCCGCTCAACGCCTCGAACAC GGTCCAGGGCACGGGGGCCACGCTTCTGCGCTGGGGCGCGGTGGGTGATGCCACCGGGTATTATGCAATGATCATCGGCG GCAAGGCGGGCAAGGGGCAGGAAATGACGGACATCGTCTGGTGGTCGTCCAGCGCCACGCGCCAGTTTGGCGGCGGCTTG TCGGATTGGCTTTCTCCGGCAACCGTCGCGCGTCTCGTGGCCGACAAGACGGTCATGTCGCCTCAGACAACGACCTGCAC TGTCCCGGCGGAGGTCAAGGCCGCTGCTCCCGACTACATGTACGGAACGCTCCACGCCTATGGTCCCGAGGAATCCTTCG CCTATCCCCCACGTCCCGCCGACCCCAAGGTGAAGTGGGTGCCGGAATGGACCGCGCGCATCCGCCATCGTTCCACCACC GGCTTCCTCGTCGGCATGGAGGGCTTCGGCGGTGCGGGCGCCGGCGCGGCGCAGCAGTCCGACCAGGAAAAGCCAGCGTG CAAGCCCAAGAAGAAGGGGCTGGGCGGATTGCTCGGGGGTGCCGTGGGCGGTGCACTGGGCGTGCCCGGGGCTGGCGGCA ACGGCTGCTGA
Upstream 100 bases:
>100_bases AGGCTTGTCCTGAAAGGGATCGGGTTATGGCAGTGACCGGTATCATTCTTTTGCGCTATACGATGCGCGCTCCGGCGAAA AGACCGGGGGCTGAAAGAGC
Downstream 100 bases:
>100_bases TCGCGCATGGCGGGCGGGCTCCTCATCGTCTGGCACAGCCGCACTGGCGCTGCCGGGGCGATGGCCCGCGCCGCTTTCGA AGGCGGGGTTCGGGAAGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 456; Mature: 455
Protein sequence:
>456_residues MARNCRRVHLRTIGGTIQAHMVASIQQPATGPVSCKEDGAMRNKTKGLVFTSTVLAAVGAAGTWAQQASAPIARYEMRAE TMSGLGGMGGGGGGVGAAMSMAFGGAPKAQHMLWLDLGSSRAAADGKPRAEHFMPAGAKLGKSVLLKTPVTKPSEPGAAE FQRPKGRMLIFWGCGEHAPKGQPVVIDFSKLAAGQVPPGLFTSAVPMDRWVSPSSSRTYGYWPGEDGKSAKPDSSLLGAH KVAGNYSPDIAFTLAKDFMAPLNASNTVQGTGATLLRWGAVGDATGYYAMIIGGKAGKGQEMTDIVWWSSSATRQFGGGL SDWLSPATVARLVADKTVMSPQTTTCTVPAEVKAAAPDYMYGTLHAYGPEESFAYPPRPADPKVKWVPEWTARIRHRSTT GFLVGMEGFGGAGAGAAQQSDQEKPACKPKKKGLGGLLGGAVGGALGVPGAGGNGC
Sequences:
>Translated_456_residues MARNCRRVHLRTIGGTIQAHMVASIQQPATGPVSCKEDGAMRNKTKGLVFTSTVLAAVGAAGTWAQQASAPIARYEMRAE TMSGLGGMGGGGGGVGAAMSMAFGGAPKAQHMLWLDLGSSRAAADGKPRAEHFMPAGAKLGKSVLLKTPVTKPSEPGAAE FQRPKGRMLIFWGCGEHAPKGQPVVIDFSKLAAGQVPPGLFTSAVPMDRWVSPSSSRTYGYWPGEDGKSAKPDSSLLGAH KVAGNYSPDIAFTLAKDFMAPLNASNTVQGTGATLLRWGAVGDATGYYAMIIGGKAGKGQEMTDIVWWSSSATRQFGGGL SDWLSPATVARLVADKTVMSPQTTTCTVPAEVKAAAPDYMYGTLHAYGPEESFAYPPRPADPKVKWVPEWTARIRHRSTT GFLVGMEGFGGAGAGAAQQSDQEKPACKPKKKGLGGLLGGAVGGALGVPGAGGNGC >Mature_455_residues ARNCRRVHLRTIGGTIQAHMVASIQQPATGPVSCKEDGAMRNKTKGLVFTSTVLAAVGAAGTWAQQASAPIARYEMRAET MSGLGGMGGGGGGVGAAMSMAFGGAPKAQHMLWLDLGSSRAAADGKPRAEHFMPAGAKLGKSVLLKTPVTKPSEPGAAEF QRPKGRMLIFWGCGEHAPKGQPVVIDFSKLAAGQVPPGLFTSAVPMDRWVSPSSSRTYGYWPGEDGKSAKPDSSLLGAHK VAGNYSPDIAFTLAKDFMAPLNASNTVQGTGATLLRWGAVGDATGYYAMIIGGKAGKGQEMTDIVWWSSSATRQFGGGLS DWLSPATVARLVADKTVMSPQTTTCTVPAEVKAAAPDYMYGTLHAYGPEESFAYPPRPADPKVKWVPEWTARIRHRSTTG FLVGMEGFGGAGAGAAQQSDQEKPACKPKKKGLGGLLGGAVGGALGVPGAGGNGC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47082; Mature: 46951
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARNCRRVHLRTIGGTIQAHMVASIQQPATGPVSCKEDGAMRNKTKGLVFTSTVLAAVGA CCCCCEEEEEEECCCCEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCC AGTWAQQASAPIARYEMRAETMSGLGGMGGGGGGVGAAMSMAFGGAPKAQHMLWLDLGSS CCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCC RAAADGKPRAEHFMPAGAKLGKSVLLKTPVTKPSEPGAAEFQRPKGRMLIFWGCGEHAPK CCCCCCCCCHHHCCCCCHHHCCEEEEECCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCC GQPVVIDFSKLAAGQVPPGLFTSAVPMDRWVSPSSSRTYGYWPGEDGKSAKPDSSLLGAH CCEEEEEHHHHHCCCCCCCHHHCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHH KVAGNYSPDIAFTLAKDFMAPLNASNTVQGTGATLLRWGAVGDATGYYAMIIGGKAGKGQ HHCCCCCCCEEEEEHHHHHCCCCCCCEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCC EMTDIVWWSSSATRQFGGGLSDWLSPATVARLVADKTVMSPQTTTCTVPAEVKAAAPDYM CCEEEEEECCCCHHHHCCCHHHHHCHHHHHHHHHHHHCCCCCCCEEECCCHHHCCCCCCE YGTLHAYGPEESFAYPPRPADPKVKWVPEWTARIRHRSTTGFLVGMEGFGGAGAGAAQQS EEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC DQEKPACKPKKKGLGGLLGGAVGGALGVPGAGGNGC CCCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure ARNCRRVHLRTIGGTIQAHMVASIQQPATGPVSCKEDGAMRNKTKGLVFTSTVLAAVGA CCCCEEEEEEECCCCEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCC AGTWAQQASAPIARYEMRAETMSGLGGMGGGGGGVGAAMSMAFGGAPKAQHMLWLDLGSS CCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCC RAAADGKPRAEHFMPAGAKLGKSVLLKTPVTKPSEPGAAEFQRPKGRMLIFWGCGEHAPK CCCCCCCCCHHHCCCCCHHHCCEEEEECCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCC GQPVVIDFSKLAAGQVPPGLFTSAVPMDRWVSPSSSRTYGYWPGEDGKSAKPDSSLLGAH CCEEEEEHHHHHCCCCCCCHHHCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHH KVAGNYSPDIAFTLAKDFMAPLNASNTVQGTGATLLRWGAVGDATGYYAMIIGGKAGKGQ HHCCCCCCCEEEEEHHHHHCCCCCCCEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCC EMTDIVWWSSSATRQFGGGLSDWLSPATVARLVADKTVMSPQTTTCTVPAEVKAAAPDYM CCEEEEEECCCCHHHHCCCHHHHHCHHHHHHHHHHHHCCCCCCCEEECCCHHHCCCCCCE YGTLHAYGPEESFAYPPRPADPKVKWVPEWTARIRHRSTTGFLVGMEGFGGAGAGAAQQS EEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC DQEKPACKPKKKGLGGLLGGAVGGALGVPGAGGNGC CCCCCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA