| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200234
Identifier: 87200234
GI number: 87200234
Start: 2362270
End: 2363361
Strand: Reverse
Name: 87200234
Synonym: Saro_2219
Alternate gene names: NA
Gene position: 2363361-2362270 (Counterclockwise)
Preceding gene: 87200235
Following gene: 87200233
Centisome position: 66.36
GC content: 67.03
Gene sequence:
>1092_bases ATGCTGAGCAAGGGTGACGATTTTCCGCTGCACCAGACGCCCGAACCGGTCGCCTATGCCGGGACCGACCGCAACTTCTA CGACCGCTACTTCTTCAACGGCTATGCGCCCGATGGCTCCGGCTTCTTCGCGGTGGCGCTGGGCATATACCCGCACCTCA ACGTCGCCGACGCGCACTTCTCGTGCATCCGCGACGGCGTACAGTACAATCTCCACGCCTCGCGCGAACTGAACATGGAG CGGCTCGACCTTGCGGTGGGGCCGATCACGATAGAAGTGGTGGAGCCGCTCAGAAGCCTGCGCGTGAAGGTCGCGGGCGA GGGCATCGCCGCCGAACTGACTTTCACCGGCCGGGCTTTCCCAATCGAGGAGCCGCGCTTCACCTACCGCATCGGTCCGC GCACCTTCATGGACTACACCCGCCTGACGCAGAACGGCCACTATGCCGGCTGGATCGAGGTCGACGGCAAGCGCATCGAC CTTGCCCCCGGCACTACCGGTACGCGCGATCGCAGCTGGGGCGTCCGTCCGGTTGGCGCCTCGGACGCCCAGCCGCACGG CCACAACGTCGTCAGCAGCTTCTTCTGGCAGTGGACGCCGGTGAACCTGCCCGGCCGCAGCCTGTTCTTCCACGTCAACG CCGACCGCCATGGCGCCCCGTGGAACACGCGCGCGGTCATCGCGCCCGACGGTGCCGCGCACGACGGCTTCTTCGAAACG CCGTCGGCCACGATGGCCTCCCCGATGCAGCCCGGCACGCGCTGGCCGGCAGGCGGGACGCTGACCATACAGCGGCCCGA AGGCCCGCTTTCGCTGACCTTTGAGCCCATCGTCCGGTTCCAGATGCGCGGGCTCGGCTATACTAGCCCGAAGTGGGGCC ACGGCCTCTACCACGGCCCGCTCGCGGTGGAGCGCGAGGATCTGGTCCTCGCCGAACTCGATCCGATGGCGCAGACGCTT GAAAACCTCCACGTCCAGATCATCTCGCGCGTGACCACGAGCGATGGCGAGACGGGCATCGGCGGGTTCGAGCAGCTCGT GATCGGCCCGTACGAGCCCTGGGGCCTCAAGGAGTATTTCGATGCGGGCTAG
Upstream 100 bases:
>100_bases GGGGCGACGCCAATTTCCTCTCGATGGCGCGCGGCGCGTGCGAGCTTGCTCTCGAACACAACAGCCTCGGGGCCCTCAAG CGTCGGATGGAGAATGCGTG
Downstream 100 bases:
>100_bases CGTCAAGCTGGCCGGGATCGTCTTGTTGGGGCTTGCCGCCGGCTCCGCATCCGCGCTCGTGTCGATGAAGCACTTCGGCA TGGGCGGGGAAGAACATCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 363; Mature: 363
Protein sequence:
>363_residues MLSKGDDFPLHQTPEPVAYAGTDRNFYDRYFFNGYAPDGSGFFAVALGIYPHLNVADAHFSCIRDGVQYNLHASRELNME RLDLAVGPITIEVVEPLRSLRVKVAGEGIAAELTFTGRAFPIEEPRFTYRIGPRTFMDYTRLTQNGHYAGWIEVDGKRID LAPGTTGTRDRSWGVRPVGASDAQPHGHNVVSSFFWQWTPVNLPGRSLFFHVNADRHGAPWNTRAVIAPDGAAHDGFFET PSATMASPMQPGTRWPAGGTLTIQRPEGPLSLTFEPIVRFQMRGLGYTSPKWGHGLYHGPLAVEREDLVLAELDPMAQTL ENLHVQIISRVTTSDGETGIGGFEQLVIGPYEPWGLKEYFDAG
Sequences:
>Translated_363_residues MLSKGDDFPLHQTPEPVAYAGTDRNFYDRYFFNGYAPDGSGFFAVALGIYPHLNVADAHFSCIRDGVQYNLHASRELNME RLDLAVGPITIEVVEPLRSLRVKVAGEGIAAELTFTGRAFPIEEPRFTYRIGPRTFMDYTRLTQNGHYAGWIEVDGKRID LAPGTTGTRDRSWGVRPVGASDAQPHGHNVVSSFFWQWTPVNLPGRSLFFHVNADRHGAPWNTRAVIAPDGAAHDGFFET PSATMASPMQPGTRWPAGGTLTIQRPEGPLSLTFEPIVRFQMRGLGYTSPKWGHGLYHGPLAVEREDLVLAELDPMAQTL ENLHVQIISRVTTSDGETGIGGFEQLVIGPYEPWGLKEYFDAG >Mature_363_residues MLSKGDDFPLHQTPEPVAYAGTDRNFYDRYFFNGYAPDGSGFFAVALGIYPHLNVADAHFSCIRDGVQYNLHASRELNME RLDLAVGPITIEVVEPLRSLRVKVAGEGIAAELTFTGRAFPIEEPRFTYRIGPRTFMDYTRLTQNGHYAGWIEVDGKRID LAPGTTGTRDRSWGVRPVGASDAQPHGHNVVSSFFWQWTPVNLPGRSLFFHVNADRHGAPWNTRAVIAPDGAAHDGFFET PSATMASPMQPGTRWPAGGTLTIQRPEGPLSLTFEPIVRFQMRGLGYTSPKWGHGLYHGPLAVEREDLVLAELDPMAQTL ENLHVQIISRVTTSDGETGIGGFEQLVIGPYEPWGLKEYFDAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40159; Mature: 40159
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSKGDDFPLHQTPEPVAYAGTDRNFYDRYFFNGYAPDGSGFFAVALGIYPHLNVADAHF CCCCCCCCCCCCCCCCCEEECCCCCCHHHHEECCCCCCCCCEEEEEEECCCCCCCCHHHH SCIRDGVQYNLHASRELNMERLDLAVGPITIEVVEPLRSLRVKVAGEGIAAELTFTGRAF HHHHCCCEEEEECCCCCCHHHEEEEECCEEEEHHHHHHHCEEEEECCCEEEEEEECCCCC PIEEPRFTYRIGPRTFMDYTRLTQNGHYAGWIEVDGKRIDLAPGTTGTRDRSWGVRPVGA CCCCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCC SDAQPHGHNVVSSFFWQWTPVNLPGRSLFFHVNADRHGAPWNTRAVIAPDGAAHDGFFET CCCCCCCCHHHHHHHEEEECCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCC PSATMASPMQPGTRWPAGGTLTIQRPEGPLSLTFEPIVRFQMRGLGYTSPKWGHGLYHGP CCCHHCCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCC LAVEREDLVLAELDPMAQTLENLHVQIISRVTTSDGETGIGGFEQLVIGPYEPWGLKEYF EEECCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEECCCCCCCCHHHH DAG CCC >Mature Secondary Structure MLSKGDDFPLHQTPEPVAYAGTDRNFYDRYFFNGYAPDGSGFFAVALGIYPHLNVADAHF CCCCCCCCCCCCCCCCCEEECCCCCCHHHHEECCCCCCCCCEEEEEEECCCCCCCCHHHH SCIRDGVQYNLHASRELNMERLDLAVGPITIEVVEPLRSLRVKVAGEGIAAELTFTGRAF HHHHCCCEEEEECCCCCCHHHEEEEECCEEEEHHHHHHHCEEEEECCCEEEEEEECCCCC PIEEPRFTYRIGPRTFMDYTRLTQNGHYAGWIEVDGKRIDLAPGTTGTRDRSWGVRPVGA CCCCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCC SDAQPHGHNVVSSFFWQWTPVNLPGRSLFFHVNADRHGAPWNTRAVIAPDGAAHDGFFET CCCCCCCCHHHHHHHEEEECCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCC PSATMASPMQPGTRWPAGGTLTIQRPEGPLSLTFEPIVRFQMRGLGYTSPKWGHGLYHGP CCCHHCCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCC LAVEREDLVLAELDPMAQTLENLHVQIISRVTTSDGETGIGGFEQLVIGPYEPWGLKEYF EEECCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEECCCCCCCCHHHH DAG CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA