Click here to switch to the map view.

The map label for this gene is yjbJ [H]

Identifier: 87200225

GI number: 87200225

Start: 2353857

End: 2354513

Strand: Direct

Name: yjbJ [H]

Synonym: Saro_2210

Alternate gene names: 87200225

Gene position: 2353857-2354513 (Clockwise)

Preceding gene: 87200221

Following gene: 87200229

Centisome position: 66.09

GC content: 60.73

Gene sequence:

>657_bases
ATGACAATGAAAGCTATCTTGGTCGCAGGCATCGCGATCACCTCTGCTACCTCCGCCAGAGCCCAGGATTTGCCCGCGCC
AGCCACAATCGAAGCCCCCGCCAGCCACTCCGAAGGCATCCGGATTGCTGAAACGTCGAACGGCTTCCAGCTGGTCGAGC
ATGGGCTGTGGTCATCCCGTCATGCCGGCCCGGCATCTGGTCTCATTGTTCCACAAAATGGCCGGGTGAACCTGCCATAC
AGATACGAACCCAAGGCCACACGTGGCCCGTCCGACTTCAGGCGAGCAAGCTACCTTCCCCACATCTATGCGGCGGAAGC
GAAGTACTCATTGCCCGCGGGCCTGCTCGATGCGCTCGTATGGACAGAATCTCGATATAACCCCTTCGCCGTCAGCCCTG
CAGGCGCAGCAGGTCTTGGACAGCTGATGCCAACCACGGCAAAAGAACTCGGGGTCCTCAATCGCTTCGATCCTATGGCC
AACATCTTCGGCGCGGCGCGGTATCTGCGGCAGATGCTCGACAGGTTCGGCGTGGTTCACCTCGCGGTGGCTGCCTACAA
TGCGGGTCCCGGCGCAGTGGAACGCGCAGGCGGCATTCCCCGGAATGGCGAGACGCCCGGATATGTCCAAGAGGTCCTTC
GACAATGGCGTTTCTAA

Upstream 100 bases:

>100_bases
TCCCCGTGCAGCCTCCACTCTGCACTCGCGCCAAACCAATTTCCTACGCCGCTTGTTCTATATATGTTCTCACTCGATTC
GGCTATGGAAGGATCGAAAA

Downstream 100 bases:

>100_bases
AGATCGACACACGATGGCCAGAGCACGGCCCATCATCCTGCGGTTTCTAGCTGGGCGGATTTGCAGCGGTTGCGACCCCC
TGTGAGATCAGCCGTCTTTG

Product: lytic transglycosylase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MTMKAILVAGIAITSATSARAQDLPAPATIEAPASHSEGIRIAETSNGFQLVEHGLWSSRHAGPASGLIVPQNGRVNLPY
RYEPKATRGPSDFRRASYLPHIYAAEAKYSLPAGLLDALVWTESRYNPFAVSPAGAAGLGQLMPTTAKELGVLNRFDPMA
NIFGAARYLRQMLDRFGVVHLAVAAYNAGPGAVERAGGIPRNGETPGYVQEVLRQWRF

Sequences:

>Translated_218_residues
MTMKAILVAGIAITSATSARAQDLPAPATIEAPASHSEGIRIAETSNGFQLVEHGLWSSRHAGPASGLIVPQNGRVNLPY
RYEPKATRGPSDFRRASYLPHIYAAEAKYSLPAGLLDALVWTESRYNPFAVSPAGAAGLGQLMPTTAKELGVLNRFDPMA
NIFGAARYLRQMLDRFGVVHLAVAAYNAGPGAVERAGGIPRNGETPGYVQEVLRQWRF
>Mature_217_residues
TMKAILVAGIAITSATSARAQDLPAPATIEAPASHSEGIRIAETSNGFQLVEHGLWSSRHAGPASGLIVPQNGRVNLPYR
YEPKATRGPSDFRRASYLPHIYAAEAKYSLPAGLLDALVWTESRYNPFAVSPAGAAGLGQLMPTTAKELGVLNRFDPMAN
IFGAARYLRQMLDRFGVVHLAVAAYNAGPGAVERAGGIPRNGETPGYVQEVLRQWRF

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 23370; Mature: 23239

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMKAILVAGIAITSATSARAQDLPAPATIEAPASHSEGIRIAETSNGFQLVEHGLWSSR
CCHHHHHHHHHHHHCCCCHHHHCCCCCCEEECCCCCCCCEEEEECCCCHHHHHHHCCCCC
HAGPASGLIVPQNGRVNLPYRYEPKATRGPSDFRRASYLPHIYAAEAKYSLPAGLLDALV
CCCCCCCEEECCCCCEECCEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH
WTESRYNPFAVSPAGAAGLGQLMPTTAKELGVLNRFDPMANIFGAARYLRQMLDRFGVVH
HHCCCCCCEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVAAYNAGPGAVERAGGIPRNGETPGYVQEVLRQWRF
HHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TMKAILVAGIAITSATSARAQDLPAPATIEAPASHSEGIRIAETSNGFQLVEHGLWSSR
CHHHHHHHHHHHHCCCCHHHHCCCCCCEEECCCCCCCCEEEEECCCCHHHHHHHCCCCC
HAGPASGLIVPQNGRVNLPYRYEPKATRGPSDFRRASYLPHIYAAEAKYSLPAGLLDALV
CCCCCCCEEECCCCCEECCEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH
WTESRYNPFAVSPAGAAGLGQLMPTTAKELGVLNRFDPMANIFGAARYLRQMLDRFGVVH
HHCCCCCCEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVAAYNAGPGAVERAGGIPRNGETPGYVQEVLRQWRF
HHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]