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The map label for this gene is qseB [H]

Identifier: 87200082

GI number: 87200082

Start: 2206348

End: 2207025

Strand: Reverse

Name: qseB [H]

Synonym: Saro_2066

Alternate gene names: 87200082

Gene position: 2207025-2206348 (Counterclockwise)

Preceding gene: 87200083

Following gene: 87200081

Centisome position: 61.97

GC content: 62.68

Gene sequence:

>678_bases
ATGCGCATCCTGATCGTCGAGGATGAACCGACTCTCGGCAAGCAGCTCAAGAATACGCTCGAGCAGAACGGCTATGCCGT
CGATCTTTCCGTCGATGGCGAAGACGGCCATTTCCTGGGTTCGACCGAGGAATACGACGCCGTCATCCTCGATCTCGGCC
TGCCCGAAATCGACGGGCTGACCGTGCTGGGCATGTGGCGCAAGGAAGGCCGCAAGTTCCCGGTCCTCGTCCTCACCGCG
CGCGACAGCTGGTCCGACAAGGTCGCAGGGCTCGACGCGGGCGCAGACGATTACCTCGCAAAGCCTTTCCAGACCGAGGA
ACTGATCGCCCGCCTGCGCGCGCTGATCCGCCGCGCATCGGGCAATTCCTCGTCCGAGCTGACCGCAGGCGACGTGCGTC
TCGATACGCGCTCGGGCCGCGTCACGCTCAACGGCGAACCGGTCAAGCTTACCGCGCAGGAATACAAGCTCCTGTCCTAT
CTGCTGCATCACAAGGGCAAGGTCGTCAGCCGTACGGAACTGATCGAGCATATCTACGATCAGGACTTCGACCGCGATTC
CAACACGATCGAGGTCTTCGTCACGCGCATTCGCAAGAAGCTGGGGCCGGACGTGATCACCACGATCCGTGGCCTTGGCT
ACAGCCTCGACGATCCGGCCGAACCCGGCCGCGGCTAA

Upstream 100 bases:

>100_bases
GGCGCACTACGAGCGAGTTCCTTGACCGTTCAGGTTTGCCGCCCCATCTAGCTCTCCAAGTTCGGTGCGAACGTCGCACC
CAGCAGGGGACAGTCTTTCC

Downstream 100 bases:

>100_bases
TTCGTGGCCGAACGAGGGCCCGCCCGAGAAGCACCGCCGCAGCCAGCGCCGCATACCGGCTCGCTGGCGCGGCGCATGCT
GCTCATCGCGGCGGGGTGGA

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRILIVEDEPTLGKQLKNTLEQNGYAVDLSVDGEDGHFLGSTEEYDAVILDLGLPEIDGLTVLGMWRKEGRKFPVLVLTA
RDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNSSSELTAGDVRLDTRSGRVTLNGEPVKLTAQEYKLLSY
LLHHKGKVVSRTELIEHIYDQDFDRDSNTIEVFVTRIRKKLGPDVITTIRGLGYSLDDPAEPGRG

Sequences:

>Translated_225_residues
MRILIVEDEPTLGKQLKNTLEQNGYAVDLSVDGEDGHFLGSTEEYDAVILDLGLPEIDGLTVLGMWRKEGRKFPVLVLTA
RDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNSSSELTAGDVRLDTRSGRVTLNGEPVKLTAQEYKLLSY
LLHHKGKVVSRTELIEHIYDQDFDRDSNTIEVFVTRIRKKLGPDVITTIRGLGYSLDDPAEPGRG
>Mature_225_residues
MRILIVEDEPTLGKQLKNTLEQNGYAVDLSVDGEDGHFLGSTEEYDAVILDLGLPEIDGLTVLGMWRKEGRKFPVLVLTA
RDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNSSSELTAGDVRLDTRSGRVTLNGEPVKLTAQEYKLLSY
LLHHKGKVVSRTELIEHIYDQDFDRDSNTIEVFVTRIRKKLGPDVITTIRGLGYSLDDPAEPGRG

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=216, Percent_Identity=45.8333333333333, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=40.625, Blast_Score=177, Evalue=7e-46,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=42.2018348623853, Blast_Score=174, Evalue=4e-45,
Organism=Escherichia coli, GI1790552, Length=216, Percent_Identity=44.4444444444444, Blast_Score=167, Evalue=4e-43,
Organism=Escherichia coli, GI87082012, Length=221, Percent_Identity=39.3665158371041, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=34.9775784753363, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1786911, Length=221, Percent_Identity=36.1990950226244, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=35.2941176470588, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789809, Length=225, Percent_Identity=31.1111111111111, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1788394, Length=223, Percent_Identity=34.5291479820628, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=33.6244541484716, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1787229, Length=222, Percent_Identity=30.1801801801802, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI2367329, Length=226, Percent_Identity=33.1858407079646, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=26.8398268398268, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=32.7102803738318, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24983; Mature: 24983

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILIVEDEPTLGKQLKNTLEQNGYAVDLSVDGEDGHFLGSTEEYDAVILDLGLPEIDGL
CEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCCCEECCCCCCCEEEEECCCCCCCCE
TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS
EEEEEEHHCCCCCCEEEEEECCCCCCHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHC
GNSSSELTAGDVRLDTRSGRVTLNGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD
CCCCCCEEECCEEEECCCCEEEECCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
QDFDRDSNTIEVFVTRIRKKLGPDVITTIRGLGYSLDDPAEPGRG
CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRILIVEDEPTLGKQLKNTLEQNGYAVDLSVDGEDGHFLGSTEEYDAVILDLGLPEIDGL
CEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCCCEECCCCCCCEEEEECCCCCCCCE
TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS
EEEEEEHHCCCCCCEEEEEECCCCCCHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHC
GNSSSELTAGDVRLDTRSGRVTLNGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD
CCCCCCEEECCEEEECCCCEEEECCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
QDFDRDSNTIEVFVTRIRKKLGPDVITTIRGLGYSLDDPAEPGRG
CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]