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The map label for this gene is yfdE [H]

Identifier: 87200061

GI number: 87200061

Start: 2183030

End: 2184097

Strand: Reverse

Name: yfdE [H]

Synonym: Saro_2045

Alternate gene names: 87200061

Gene position: 2184097-2183030 (Counterclockwise)

Preceding gene: 87200062

Following gene: 87200058

Centisome position: 61.32

GC content: 67.32

Gene sequence:

>1068_bases
ATGCCGGGCGCACTCGATGGGCTGACCGTACTCGAATTCGCGGGCATCGGCCCGGGGCCGTTCGCGTGCATGATGCTGGC
CGACCATGGCGCCCGCGTCATCCGCATAGACCGGCCCTCCAAGGGCGACCGCGTCGGCGACAGCGGCAACCGTGACATTC
TCAACCGTAATCGCGAGCGGCTGGAACTGGACCTCAAGGACCCGGCTTCGATCGCGCGCATCCGCGAACTGGTGAAGCAG
GCCGACGCCATCGTCGAGGGGTATCGCCCCGGGGTGATGGAACGGCTGGGCCTTGGCCCCGACGTTCTGCTCGCCGACAA
TCCCGGGCTGGTCTACGGGCGCATGACCGGCTGGGGACAGGAGGGGCCGATGGCGCCGCTCGCCGGACACGACATCAACT
ACATTGCACTGGCGGGCGCGCTCCACAGCTTCGGGCAAGCGGGCGGAAAGCCACAGTTCCCGGTCAATCTTGTCGGCGAT
TTCGGCGGCGGCGGCATGTTGATGGCGTTCGGCGTGATGGCGGCGGTCTTCTCGGCGCAACGCACGGGCAAGGGACAGGT
CGTCGATTGCGCGATGGTCGATGGCGCGGCGATTCTTTCCGCAATGACCTACACGTTCCTCGGCAATGGCCGCTGGAAGG
ACGAGCGCGGCGTGAACCTGCTCGACGGCGGGGCCCATTTCTACGACACCTACGAGACGAGCGACGGCAAGTGGATATCG
ATCGGCTCGATTGAACCCCAGTTCTATGCCCTGCTTCTGGAAAAGACCGGGCTGACAGACGATCCCGAATTCGCGCCGCA
GATGGACCCGCGCGTCTGGCCCAGGCTCAAGGACCGGCTTGCGGCGCTTTTCCTGACCCGCACCCGCGATGAATGGTGCG
CCATCATGGACGGCACCGACATCTGTTTCGCCCCGGTACTCAGTCTGCGCGAGGCGCCCCGCCATCCGCACAACGTCGCA
CGGGGGACCTTCGTCGAGGACGGCGGCATGGTCATGCCCGCGCCCGCGCCCCGCTTTCTCGGAACGCCGGCGCCGCAGCC
CTCGCTGGCCGCGCGCGAGGGCGGCTGA

Upstream 100 bases:

>100_bases
CCAGGGGCCTGCGCAATCCGTCATGAACTCGGCGCTCGACAGTGTCCTCCGGCATGATTAATTCCGATTCAATCGAACGA
TTAAATCTGGGAGACATGGC

Downstream 100 bases:

>100_bases
AGTCAGTCGGCCCTTACGGCGGCGTCCAGTTCGGCATCGGGGTACTTGCGCTTGTGGCGGATCGACCACCACAGCGATAG
GCCGATCAGCGCCGCACCGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MPGALDGLTVLEFAGIGPGPFACMMLADHGARVIRIDRPSKGDRVGDSGNRDILNRNRERLELDLKDPASIARIRELVKQ
ADAIVEGYRPGVMERLGLGPDVLLADNPGLVYGRMTGWGQEGPMAPLAGHDINYIALAGALHSFGQAGGKPQFPVNLVGD
FGGGGMLMAFGVMAAVFSAQRTGKGQVVDCAMVDGAAILSAMTYTFLGNGRWKDERGVNLLDGGAHFYDTYETSDGKWIS
IGSIEPQFYALLLEKTGLTDDPEFAPQMDPRVWPRLKDRLAALFLTRTRDEWCAIMDGTDICFAPVLSLREAPRHPHNVA
RGTFVEDGGMVMPAPAPRFLGTPAPQPSLAAREGG

Sequences:

>Translated_355_residues
MPGALDGLTVLEFAGIGPGPFACMMLADHGARVIRIDRPSKGDRVGDSGNRDILNRNRERLELDLKDPASIARIRELVKQ
ADAIVEGYRPGVMERLGLGPDVLLADNPGLVYGRMTGWGQEGPMAPLAGHDINYIALAGALHSFGQAGGKPQFPVNLVGD
FGGGGMLMAFGVMAAVFSAQRTGKGQVVDCAMVDGAAILSAMTYTFLGNGRWKDERGVNLLDGGAHFYDTYETSDGKWIS
IGSIEPQFYALLLEKTGLTDDPEFAPQMDPRVWPRLKDRLAALFLTRTRDEWCAIMDGTDICFAPVLSLREAPRHPHNVA
RGTFVEDGGMVMPAPAPRFLGTPAPQPSLAAREGG
>Mature_354_residues
PGALDGLTVLEFAGIGPGPFACMMLADHGARVIRIDRPSKGDRVGDSGNRDILNRNRERLELDLKDPASIARIRELVKQA
DAIVEGYRPGVMERLGLGPDVLLADNPGLVYGRMTGWGQEGPMAPLAGHDINYIALAGALHSFGQAGGKPQFPVNLVGDF
GGGGMLMAFGVMAAVFSAQRTGKGQVVDCAMVDGAAILSAMTYTFLGNGRWKDERGVNLLDGGAHFYDTYETSDGKWISI
GSIEPQFYALLLEKTGLTDDPEFAPQMDPRVWPRLKDRLAALFLTRTRDEWCAIMDGTDICFAPVLSLREAPRHPHNVAR
GTFVEDGGMVMPAPAPRFLGTPAPQPSLAAREGG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=342, Percent_Identity=47.3684210526316, Blast_Score=329, Evalue=2e-90,
Organism=Homo sapiens, GI266456254, Length=342, Percent_Identity=47.3684210526316, Blast_Score=328, Evalue=5e-90,
Organism=Homo sapiens, GI266458393, Length=254, Percent_Identity=48.4251968503937, Blast_Score=253, Evalue=1e-67,
Organism=Homo sapiens, GI266458397, Length=251, Percent_Identity=48.605577689243, Blast_Score=253, Evalue=3e-67,
Organism=Homo sapiens, GI300863128, Length=356, Percent_Identity=28.9325842696629, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI300863124, Length=334, Percent_Identity=29.3413173652695, Blast_Score=139, Evalue=5e-33,
Organism=Homo sapiens, GI266458395, Length=141, Percent_Identity=48.2269503546099, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI42822893, Length=141, Percent_Identity=48.2269503546099, Blast_Score=138, Evalue=7e-33,
Organism=Homo sapiens, GI13376042, Length=334, Percent_Identity=25.4491017964072, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI300863126, Length=150, Percent_Identity=35.3333333333333, Blast_Score=98, Evalue=1e-20,
Organism=Escherichia coli, GI87082093, Length=362, Percent_Identity=28.7292817679558, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1788717, Length=206, Percent_Identity=31.5533980582524, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1786222, Length=363, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=360, Percent_Identity=35.8333333333333, Blast_Score=226, Evalue=1e-59,
Organism=Caenorhabditis elegans, GI32564160, Length=338, Percent_Identity=35.207100591716, Blast_Score=223, Evalue=2e-58,
Organism=Drosophila melanogaster, GI24585488, Length=344, Percent_Identity=42.4418604651163, Blast_Score=284, Evalue=7e-77,
Organism=Drosophila melanogaster, GI24648431, Length=340, Percent_Identity=29.4117647058824, Blast_Score=116, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 38091; Mature: 37960

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGALDGLTVLEFAGIGPGPFACMMLADHGARVIRIDRPSKGDRVGDSGNRDILNRNRER
CCCCCCCHHHHHHCCCCCCHHEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHCCCHH
LELDLKDPASIARIRELVKQADAIVEGYRPGVMERLGLGPDVLLADNPGLVYGRMTGWGQ
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEECCCCEEEECCCCCCC
EGPMAPLAGHDINYIALAGALHSFGQAGGKPQFPVNLVGDFGGGGMLMAFGVMAAVFSAQ
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
RTGKGQVVDCAMVDGAAILSAMTYTFLGNGRWKDERGVNLLDGGAHFYDTYETSDGKWIS
CCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEE
IGSIEPQFYALLLEKTGLTDDPEFAPQMDPRVWPRLKDRLAALFLTRTRDEWCAIMDGTD
ECCCCHHHEEEEEHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
ICFAPVLSLREAPRHPHNVARGTFVEDGGMVMPAPAPRFLGTPAPQPSLAAREGG
HHHHHHHHHHHCCCCCCHHCCCCEECCCCEECCCCCCHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PGALDGLTVLEFAGIGPGPFACMMLADHGARVIRIDRPSKGDRVGDSGNRDILNRNRER
CCCCCCHHHHHHCCCCCCHHEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHCCCHH
LELDLKDPASIARIRELVKQADAIVEGYRPGVMERLGLGPDVLLADNPGLVYGRMTGWGQ
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEECCCCEEEECCCCCCC
EGPMAPLAGHDINYIALAGALHSFGQAGGKPQFPVNLVGDFGGGGMLMAFGVMAAVFSAQ
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
RTGKGQVVDCAMVDGAAILSAMTYTFLGNGRWKDERGVNLLDGGAHFYDTYETSDGKWIS
CCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEE
IGSIEPQFYALLLEKTGLTDDPEFAPQMDPRVWPRLKDRLAALFLTRTRDEWCAIMDGTD
ECCCCHHHEEEEEHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
ICFAPVLSLREAPRHPHNVARGTFVEDGGMVMPAPAPRFLGTPAPQPSLAAREGG
HHHHHHHHHHHCCCCCCHHCCCCEECCCCEECCCCCCHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]