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The map label for this gene is ydiF [H]

Identifier: 87200031

GI number: 87200031

Start: 2146923

End: 2148500

Strand: Direct

Name: ydiF [H]

Synonym: Saro_2015

Alternate gene names: 87200031

Gene position: 2146923-2148500 (Clockwise)

Preceding gene: 87200030

Following gene: 87200036

Centisome position: 60.28

GC content: 68.44

Gene sequence:

>1578_bases
ATGCCCGCTTCGATAACTGTCTCCTCTCTTTCCTGGTCCACGCCTGACGGCCGGCCGGTCCTTTCCGGCCTCGACCTCTC
TTTCGCTGCTGAACGCACCGGCATTGTTGGCCGCAACGGCACCGGCAAGTCCACTCTGCTGCGTCTGATCGCCGGAGAGC
TTGCGCCGTCATCCGGCAGGATCGTCGTCAATGGAACGATCGCCGTCCTGCGCCAGATCGTGGCCCGCAACCCCGGCGAG
ACGCTGGCCGAGGCATTGGGCATTGCCGACGATCTTGCACTCCTGCGCCGTGCGGAACAGGGGCTTGCCAGCGTCGATGA
TCTCGAACGCGCCGACTGGACCCTGGAGAGCCGCCTGGCCGAGGCCTTTGCCCAGGCCGGCCTTGCCGCCACCGCGCAGA
CCCCCGTCGCCACGTTGTCGGGCGGCCAGCAGACCCGTGCCGGGCTTGCCGCCGCGATCCTTGCCGATCCCGACTTCCTC
CTGCTCGACGAACCGACCAACAACCTCGATGCCGAAGGACGCGAAAGCCTTGGCGCATTCCTTGCGGGCTGGCGCAAGGG
CGCGCTGGTGGTCAGCCACGACCGCCACCTCCTCGAAGGAATGGACGCCGTGGTCGAGCTGACCTCGCTTGGCGCGACGC
GCTATGGCGGGCCATACAGCCACTACCGCGAACGCAAGGATCTGGAACTCGCCACCGCGCGCCAGGAACGCGATCTCGCG
GAACGGGCGCTCGGCCAGGTGCGCGAAAGCGCGCAGACCGCGCGTGAGCGAAAGGACCGGCGCGATGGCGTCGGCCAGAA
GAAGGCGCGCAAGGGCGACATGCCGCGCATCCTGATCGGCGCGCGCAAGGAGCGGGCGGAAAACACCACCGGATCCAACG
CCCGTCTCGCCGAACGCGAGGCCGCCGAAGCAGCCGAGCGCCTCGCCGAAGCCCGCGCTCGCCTCGAAGTGGTCGAACCC
CTGCGGGTCGAACTCCTCCCCACAGGGCTCGCCGCCTCGCGAACGGTGGTCGAACTCATCGACGTCACCTTTGGCCATGG
CGATGCTCCGCCGCTGTTCTCCGCTCTCGATCTTGCCGTCGTGGGACCGGAACGCATCGCCATCACCGGCCCCAACGGTG
CAGGGAAATCGAGCCTGATCCATCTGATCGCCGGCAACCTGAAACCGCGCGCCGGCAGCGTCCGGGTGCCGGTGCCCTTC
GCCCTGCTGGACCAGCACGCCAGCCTGCTCGATCCCGCCCTGAGCATCGTCGGCAACCTCCGAAAGCTAAAGCCAGACCT
GGACGAGAACGCCGCCCGCGCGGCGCTGGCCCGCTTCGGTTTCCGGGCAAGTGCGGCGGACCAGACGGTGTCGACGCTAA
GCGGCGGCCAGGCGATCCGCGCCGCGCTGGCCTGCGTCCTTGCGGGAACGCCCCCGCATCTTCTGCTGCTGGACGAGCCG
ACCAACCATCTCGACCTCGACGCCATCCAGGCGATCGAGGCAGGGCTGTCCGCCTACGATGGCGCGCTGATAGCGGTAAG
CCACGACGTGGCGTTCCTCGATGCCATCGCCATCACGCGCCGGGTCACGCTGGAATAG

Upstream 100 bases:

>100_bases
TGACGCTACCTTGCGCAACTCACTGCCGGAGTATTCGAAGTCATGGATCGCCCCCTGAACGCAACGCCCCATTGCCTTGC
CTTCAGGAAAGTCGCGTCCC

Downstream 100 bases:

>100_bases
CGCTGCGCCTACCAGGCCTCCGCGACATCGACCAGCGCCTCGCGGTCGAGGATCGTCACCCTGCCCCCCTTCAGCGCAAC
GATGCCGTTCTCGGCCCAGG

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MPASITVSSLSWSTPDGRPVLSGLDLSFAAERTGIVGRNGTGKSTLLRLIAGELAPSSGRIVVNGTIAVLRQIVARNPGE
TLAEALGIADDLALLRRAEQGLASVDDLERADWTLESRLAEAFAQAGLAATAQTPVATLSGGQQTRAGLAAAILADPDFL
LLDEPTNNLDAEGRESLGAFLAGWRKGALVVSHDRHLLEGMDAVVELTSLGATRYGGPYSHYRERKDLELATARQERDLA
ERALGQVRESAQTARERKDRRDGVGQKKARKGDMPRILIGARKERAENTTGSNARLAEREAAEAAERLAEARARLEVVEP
LRVELLPTGLAASRTVVELIDVTFGHGDAPPLFSALDLAVVGPERIAITGPNGAGKSSLIHLIAGNLKPRAGSVRVPVPF
ALLDQHASLLDPALSIVGNLRKLKPDLDENAARAALARFGFRASAADQTVSTLSGGQAIRAALACVLAGTPPHLLLLDEP
TNHLDLDAIQAIEAGLSAYDGALIAVSHDVAFLDAIAITRRVTLE

Sequences:

>Translated_525_residues
MPASITVSSLSWSTPDGRPVLSGLDLSFAAERTGIVGRNGTGKSTLLRLIAGELAPSSGRIVVNGTIAVLRQIVARNPGE
TLAEALGIADDLALLRRAEQGLASVDDLERADWTLESRLAEAFAQAGLAATAQTPVATLSGGQQTRAGLAAAILADPDFL
LLDEPTNNLDAEGRESLGAFLAGWRKGALVVSHDRHLLEGMDAVVELTSLGATRYGGPYSHYRERKDLELATARQERDLA
ERALGQVRESAQTARERKDRRDGVGQKKARKGDMPRILIGARKERAENTTGSNARLAEREAAEAAERLAEARARLEVVEP
LRVELLPTGLAASRTVVELIDVTFGHGDAPPLFSALDLAVVGPERIAITGPNGAGKSSLIHLIAGNLKPRAGSVRVPVPF
ALLDQHASLLDPALSIVGNLRKLKPDLDENAARAALARFGFRASAADQTVSTLSGGQAIRAALACVLAGTPPHLLLLDEP
TNHLDLDAIQAIEAGLSAYDGALIAVSHDVAFLDAIAITRRVTLE
>Mature_524_residues
PASITVSSLSWSTPDGRPVLSGLDLSFAAERTGIVGRNGTGKSTLLRLIAGELAPSSGRIVVNGTIAVLRQIVARNPGET
LAEALGIADDLALLRRAEQGLASVDDLERADWTLESRLAEAFAQAGLAATAQTPVATLSGGQQTRAGLAAAILADPDFLL
LDEPTNNLDAEGRESLGAFLAGWRKGALVVSHDRHLLEGMDAVVELTSLGATRYGGPYSHYRERKDLELATARQERDLAE
RALGQVRESAQTARERKDRRDGVGQKKARKGDMPRILIGARKERAENTTGSNARLAEREAAEAAERLAEARARLEVVEPL
RVELLPTGLAASRTVVELIDVTFGHGDAPPLFSALDLAVVGPERIAITGPNGAGKSSLIHLIAGNLKPRAGSVRVPVPFA
LLDQHASLLDPALSIVGNLRKLKPDLDENAARAALARFGFRASAADQTVSTLSGGQAIRAALACVLAGTPPHLLLLDEPT
NHLDLDAIQAIEAGLSAYDGALIAVSHDVAFLDAIAITRRVTLE

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=530, Percent_Identity=30.188679245283, Blast_Score=171, Evalue=2e-42,
Organism=Homo sapiens, GI10947135, Length=535, Percent_Identity=30.6542056074766, Blast_Score=162, Evalue=5e-40,
Organism=Homo sapiens, GI69354671, Length=535, Percent_Identity=30.6542056074766, Blast_Score=162, Evalue=6e-40,
Organism=Homo sapiens, GI27881506, Length=538, Percent_Identity=28.2527881040892, Blast_Score=146, Evalue=6e-35,
Organism=Homo sapiens, GI10947137, Length=538, Percent_Identity=28.4386617100372, Blast_Score=145, Evalue=7e-35,
Organism=Homo sapiens, GI105990541, Length=196, Percent_Identity=29.0816326530612, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI153792144, Length=217, Percent_Identity=29.0322580645161, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI31657092, Length=242, Percent_Identity=25.2066115702479, Blast_Score=69, Evalue=7e-12,
Organism=Escherichia coli, GI1787182, Length=538, Percent_Identity=29.368029739777, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI2367384, Length=535, Percent_Identity=30.2803738317757, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1787041, Length=527, Percent_Identity=28.2732447817837, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI1789751, Length=516, Percent_Identity=28.6821705426357, Blast_Score=168, Evalue=7e-43,
Organism=Escherichia coli, GI87081782, Length=530, Percent_Identity=28.3018867924528, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87081709, Length=222, Percent_Identity=29.7297297297297, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786345, Length=175, Percent_Identity=32, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1786563, Length=187, Percent_Identity=31.0160427807487, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081834, Length=194, Percent_Identity=30.4123711340206, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787370, Length=227, Percent_Identity=29.5154185022026, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786253, Length=195, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI48994943, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1787758, Length=203, Percent_Identity=31.0344827586207, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081791, Length=164, Percent_Identity=30.4878048780488, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788761, Length=217, Percent_Identity=29.4930875576037, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788210, Length=229, Percent_Identity=27.0742358078603, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788897, Length=170, Percent_Identity=32.3529411764706, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789032, Length=172, Percent_Identity=30.2325581395349, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786319, Length=229, Percent_Identity=25.764192139738, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787029, Length=163, Percent_Identity=32.5153374233129, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788225, Length=194, Percent_Identity=30.9278350515464, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=538, Percent_Identity=31.0408921933086, Blast_Score=180, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17559834, Length=501, Percent_Identity=28.9421157684631, Blast_Score=166, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI17555318, Length=535, Percent_Identity=28.785046728972, Blast_Score=166, Evalue=3e-41,
Organism=Caenorhabditis elegans, GI115533608, Length=204, Percent_Identity=26.9607843137255, Blast_Score=72, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6321121, Length=560, Percent_Identity=28.9285714285714, Blast_Score=164, Evalue=5e-41,
Organism=Saccharomyces cerevisiae, GI6320874, Length=532, Percent_Identity=27.4436090225564, Blast_Score=150, Evalue=5e-37,
Organism=Saccharomyces cerevisiae, GI6322640, Length=227, Percent_Identity=31.2775330396476, Blast_Score=70, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6325030, Length=187, Percent_Identity=33.1550802139037, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24666836, Length=517, Percent_Identity=30.5609284332689, Blast_Score=187, Evalue=2e-47,
Organism=Drosophila melanogaster, GI24641342, Length=521, Percent_Identity=30.9021113243762, Blast_Score=183, Evalue=3e-46,
Organism=Drosophila melanogaster, GI24642252, Length=509, Percent_Identity=28.8801571709234, Blast_Score=164, Evalue=2e-40,
Organism=Drosophila melanogaster, GI18859989, Length=509, Percent_Identity=28.8801571709234, Blast_Score=164, Evalue=2e-40,
Organism=Drosophila melanogaster, GI116007184, Length=177, Percent_Identity=29.3785310734463, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI221500365, Length=177, Percent_Identity=29.3785310734463, Blast_Score=73, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 55340; Mature: 55209

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASITVSSLSWSTPDGRPVLSGLDLSFAAERTGIVGRNGTGKSTLLRLIAGELAPSSGR
CCCCEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCE
IVVNGTIAVLRQIVARNPGETLAEALGIADDLALLRRAEQGLASVDDLERADWTLESRLA
EEEECHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHH
EAFAQAGLAATAQTPVATLSGGQQTRAGLAAAILADPDFLLLDEPTNNLDAEGRESLGAF
HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHEECCCCEEEEECCCCCCCCCCHHHHHHH
LAGWRKGALVVSHDRHLLEGMDAVVELTSLGATRYGGPYSHYRERKDLELATARQERDLA
HHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
ERALGQVRESAQTARERKDRRDGVGQKKARKGDMPRILIGARKERAENTTGSNARLAERE
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCHHHCCCCCCCCCHHHHHH
AAEAAERLAEARARLEVVEPLRVELLPTGLAASRTVVELIDVTFGHGDAPPLFSALDLAV
HHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHEE
VGPERIAITGPNGAGKSSLIHLIAGNLKPRAGSVRVPVPFALLDQHASLLDPALSIVGNL
ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHH
RKLKPDLDENAARAALARFGFRASAADQTVSTLSGGQAIRAALACVLAGTPPHLLLLDEP
HHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECC
TNHLDLDAIQAIEAGLSAYDGALIAVSHDVAFLDAIAITRRVTLE
CCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHEECC
>Mature Secondary Structure 
PASITVSSLSWSTPDGRPVLSGLDLSFAAERTGIVGRNGTGKSTLLRLIAGELAPSSGR
CCCEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCE
IVVNGTIAVLRQIVARNPGETLAEALGIADDLALLRRAEQGLASVDDLERADWTLESRLA
EEEECHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHH
EAFAQAGLAATAQTPVATLSGGQQTRAGLAAAILADPDFLLLDEPTNNLDAEGRESLGAF
HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHEECCCCEEEEECCCCCCCCCCHHHHHHH
LAGWRKGALVVSHDRHLLEGMDAVVELTSLGATRYGGPYSHYRERKDLELATARQERDLA
HHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
ERALGQVRESAQTARERKDRRDGVGQKKARKGDMPRILIGARKERAENTTGSNARLAERE
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCHHHCCCCCCCCCHHHHHH
AAEAAERLAEARARLEVVEPLRVELLPTGLAASRTVVELIDVTFGHGDAPPLFSALDLAV
HHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHEE
VGPERIAITGPNGAGKSSLIHLIAGNLKPRAGSVRVPVPFALLDQHASLLDPALSIVGNL
ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHH
RKLKPDLDENAARAALARFGFRASAADQTVSTLSGGQAIRAALACVLAGTPPHLLLLDEP
HHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECC
TNHLDLDAIQAIEAGLSAYDGALIAVSHDVAFLDAIAITRRVTLE
CCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Endonuclease; Excision [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]