| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200022
Identifier: 87200022
GI number: 87200022
Start: 2140389
End: 2140850
Strand: Reverse
Name: 87200022
Synonym: Saro_2006
Alternate gene names: NA
Gene position: 2140850-2140389 (Counterclockwise)
Preceding gene: 87200023
Following gene: 87200021
Centisome position: 60.11
GC content: 67.32
Gene sequence:
>462_bases ATGAAGAACCTTGTTCCTGCCGCGCTCGCGCTCGGCGTATCGTTGACGGCTTTTCCCGCCCAGGCCCTGGAGCACCGGAT CGCGCTCGACCACCCGGACGGACCGATTACCGCCGATTACCGGGGCGCCGTGTCGCTGGAGACCAGGCAGACGGGCAGCG CCGGACCGGGCGGTCGGGCAGCGACCCTGCGCTGCGACTGGTCGGTCTCTCTTTCGGTCGAGCGGACGGCCATCCGGGGA ACCGCGCTTACGGCGCGGCGTTCGATGACCCGCGAGGGTGCGCTGAAGGGATCGGCGCCGGGTTGGTGTTCCAAAAGCCG CGACGGGATAGAACGCATCGTCGAAGCGCGCCGGGATAGCCTGCGCGAGGCAATGATGGCTATCGTGGCGCAGGATCGGG ATGCCATACTCGTTGATGCAGATGATGCGCGCCAGCGCACGAGGACGGACAAGGAGGCATGA
Upstream 100 bases:
>100_bases AACAAACGTTACAATTCCGCATCTTGGCGGGACAATTGGGGTGCTTAGGTGAGTAGTGTCACCAGCCGAAAAAGGCTGGG GCACCGCAGGAGACCATAGC
Downstream 100 bases:
>100_bases CGGAATGACCGGGATCGGTTCGAGGACGGTATGTGCGCGCGGCGCGCTGGTGGTTCTGGGCGTGATGGCGGCTGCGCCGT CGGTTCACGCGCAGTCGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 153; Mature: 153
Protein sequence:
>153_residues MKNLVPAALALGVSLTAFPAQALEHRIALDHPDGPITADYRGAVSLETRQTGSAGPGGRAATLRCDWSVSLSVERTAIRG TALTARRSMTREGALKGSAPGWCSKSRDGIERIVEARRDSLREAMMAIVAQDRDAILVDADDARQRTRTDKEA
Sequences:
>Translated_153_residues MKNLVPAALALGVSLTAFPAQALEHRIALDHPDGPITADYRGAVSLETRQTGSAGPGGRAATLRCDWSVSLSVERTAIRG TALTARRSMTREGALKGSAPGWCSKSRDGIERIVEARRDSLREAMMAIVAQDRDAILVDADDARQRTRTDKEA >Mature_153_residues MKNLVPAALALGVSLTAFPAQALEHRIALDHPDGPITADYRGAVSLETRQTGSAGPGGRAATLRCDWSVSLSVERTAIRG TALTARRSMTREGALKGSAPGWCSKSRDGIERIVEARRDSLREAMMAIVAQDRDAILVDADDARQRTRTDKEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16398; Mature: 16398
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNLVPAALALGVSLTAFPAQALEHRIALDHPDGPITADYRGAVSLETRQTGSAGPGGRA CCCCHHHHHHHCCCHHHHHHHHHHHCEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCE ATLRCDWSVSLSVERTAIRGTALTARRSMTREGALKGSAPGWCSKSRDGIERIVEARRDS EEEEECCEEEEEEEHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH LREAMMAIVAQDRDAILVDADDARQRTRTDKEA HHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCC >Mature Secondary Structure MKNLVPAALALGVSLTAFPAQALEHRIALDHPDGPITADYRGAVSLETRQTGSAGPGGRA CCCCHHHHHHHCCCHHHHHHHHHHHCEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCE ATLRCDWSVSLSVERTAIRGTALTARRSMTREGALKGSAPGWCSKSRDGIERIVEARRDS EEEEECCEEEEEEEHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH LREAMMAIVAQDRDAILVDADDARQRTRTDKEA HHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA