| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200015
Identifier: 87200015
GI number: 87200015
Start: 2132808
End: 2133530
Strand: Reverse
Name: 87200015
Synonym: Saro_1999
Alternate gene names: NA
Gene position: 2133530-2132808 (Counterclockwise)
Preceding gene: 87200016
Following gene: 87200014
Centisome position: 59.9
GC content: 66.25
Gene sequence:
>723_bases ATGAGCAAGGCCCTTGCAAGCGATGTCGCGATGGTGCTGTCGGCGGGCCTGGGCAAGAGGATGCGGCCGTTGACGGCGAC GCGCCCGAAGCCGCTGGTCCATGTGGCGGGCAAGCCCCTGATCGACCATTCTCTCGACAAGCTCCAGGAACCTGGCGTGG CGCGGGCGGTGGTCAACGTCCACTACCTTGCCGATGCGATGGAAGCCTATCTGGCGCAACGCAAGGACCCGCAGATCCTC ATCTCGGACGAGCGGGAGGAGCTGCTCGAGACCGGCGGGGGCATGGTCAAGGCCTTGCCGCTGATCGGGACCGACCCGTT CTTTGCGCTTAACAGCGACAACATCTGGCTCGACGGTCCGCGCAACGTGTTCCAGCACCTGTCGGACCATTGGGACGCGG AACGGATGGACGCGCTGCTCCTGCTGGTTCCCCACGCCCGCGCGTTCAACTATCGCGGCAAGGGCGATTTTCACATGGAT GCCCTCGGCCGCATCTCGCGGCGACGCAGCGGCCGTGTCGCCCCGTTCATCTATAGCGGTATCCAGCTCGTGTCCCACCG TCTCCTGCGCGATGCACCCGAGGGCGCCTTCGGCACGATGAAGCTGTGGGAGCGTGCGATAGGGGAAGGGCGCCTGTTCG GCGTGTCGCACCTCGGCCTGTGGTACGAGGTCGGCGAACCCGGCATGATCGCCCCGACCGAGGCGGCGTTGCGGCAGGAC TGA
Upstream 100 bases:
>100_bases AGCGCGATCTGGCCCATCCGGCGCTGGCTCCCGTGGCCGAGTGGTTCGACCGGAACATCCCCGCGGAGCTTCGCGAGGCG CGCGGGGGCGCGTTCGAGGC
Downstream 100 bases:
>100_bases TGGACGACGCCCGCGCCCGCCCGCGCGTCTGGTCGATCGCGGCGCATCGCGGCTTTGCCGACGCGCTCGTCGCGGGTCTC GTCCCGCGTTATCGCGAGGA
Product: nucleotidyl transferase
Products: NA
Alternate protein names: Nucleotidyltransferase Family Protein; Nucleotidyl Transferase Family Protein; Mannose-1-Phosphate Guanylyltransferase; Mannose-1-Phosphate Guanyltransferase; Nucleoside-Diphosphate-Sugar Pyrophosphorylase; Nucleotidyl Transferase Superfamily; Nucleotidyltransferase; Sugar-Phosphate Nucleotidyl Transferase; Nucleotidyl Transferase Protein; Mannose-1-Phosphate Guanyltransferase-Related Protein; Nucleotidyltransferase Protein; Transaldolase AB; ADP-Glucose Pyrophosphorylase; Aminoglycoside Phosphotransferase; Nucleotidyl Transferase Superfamily Protein
Number of amino acids: Translated: 240; Mature: 239
Protein sequence:
>240_residues MSKALASDVAMVLSAGLGKRMRPLTATRPKPLVHVAGKPLIDHSLDKLQEPGVARAVVNVHYLADAMEAYLAQRKDPQIL ISDEREELLETGGGMVKALPLIGTDPFFALNSDNIWLDGPRNVFQHLSDHWDAERMDALLLLVPHARAFNYRGKGDFHMD ALGRISRRRSGRVAPFIYSGIQLVSHRLLRDAPEGAFGTMKLWERAIGEGRLFGVSHLGLWYEVGEPGMIAPTEAALRQD
Sequences:
>Translated_240_residues MSKALASDVAMVLSAGLGKRMRPLTATRPKPLVHVAGKPLIDHSLDKLQEPGVARAVVNVHYLADAMEAYLAQRKDPQIL ISDEREELLETGGGMVKALPLIGTDPFFALNSDNIWLDGPRNVFQHLSDHWDAERMDALLLLVPHARAFNYRGKGDFHMD ALGRISRRRSGRVAPFIYSGIQLVSHRLLRDAPEGAFGTMKLWERAIGEGRLFGVSHLGLWYEVGEPGMIAPTEAALRQD >Mature_239_residues SKALASDVAMVLSAGLGKRMRPLTATRPKPLVHVAGKPLIDHSLDKLQEPGVARAVVNVHYLADAMEAYLAQRKDPQILI SDEREELLETGGGMVKALPLIGTDPFFALNSDNIWLDGPRNVFQHLSDHWDAERMDALLLLVPHARAFNYRGKGDFHMDA LGRISRRRSGRVAPFIYSGIQLVSHRLLRDAPEGAFGTMKLWERAIGEGRLFGVSHLGLWYEVGEPGMIAPTEAALRQD
Specific function: Unknown
COG id: COG1208
COG function: function code MJ; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI11761619, Length=226, Percent_Identity=30.9734513274336, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI11761621, Length=226, Percent_Identity=30.9734513274336, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI133931050, Length=225, Percent_Identity=30.2222222222222, Blast_Score=78, Evalue=3e-15, Organism=Drosophila melanogaster, GI21355443, Length=126, Percent_Identity=36.5079365079365, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI24644084, Length=126, Percent_Identity=36.5079365079365, Blast_Score=74, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26549; Mature: 26418
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKALASDVAMVLSAGLGKRMRPLTATRPKPLVHVAGKPLIDHSLDKLQEPGVARAVVNV CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHH HYLADAMEAYLAQRKDPQILISDEREELLETGGGMVKALPLIGTDPFFALNSDNIWLDGP HHHHHHHHHHHHHCCCCCEEECCCHHHHHHCCCCEEEEEEEECCCCEEEECCCCEEECCH RNVFQHLSDHWDAERMDALLLLVPHARAFNYRGKGDFHMDALGRISRRRSGRVAPFIYSG HHHHHHHHHCCCHHHHCEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH IQLVSHRLLRDAPEGAFGTMKLWERAIGEGRLFGVSHLGLWYEVGEPGMIAPTEAALRQD HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEHHCCEEEEECCCCCCCCCHHHHCCC >Mature Secondary Structure SKALASDVAMVLSAGLGKRMRPLTATRPKPLVHVAGKPLIDHSLDKLQEPGVARAVVNV CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHH HYLADAMEAYLAQRKDPQILISDEREELLETGGGMVKALPLIGTDPFFALNSDNIWLDGP HHHHHHHHHHHHHCCCCCEEECCCHHHHHHCCCCEEEEEEEECCCCEEEECCCCEEECCH RNVFQHLSDHWDAERMDALLLLVPHARAFNYRGKGDFHMDALGRISRRRSGRVAPFIYSG HHHHHHHHHCCCHHHHCEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH IQLVSHRLLRDAPEGAFGTMKLWERAIGEGRLFGVSHLGLWYEVGEPGMIAPTEAALRQD HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEHHCCEEEEECCCCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA