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The map label for this gene is ygcA [C]

Identifier: 87199804

GI number: 87199804

Start: 1885409

End: 1886614

Strand: Direct

Name: ygcA [C]

Synonym: Saro_1787

Alternate gene names: 87199804

Gene position: 1885409-1886614 (Clockwise)

Preceding gene: 87199803

Following gene: 87199807

Centisome position: 52.94

GC content: 68.91

Gene sequence:

>1206_bases
ATGAATGATGCCGGCCTGATCGTGCGCGTTGCCGCCAAGGGCGAGGGGGCAACTGCCGACGGACGCTATGCCGCGCTGGC
CGCGCCTGGCGATACGCTCCTGCCCGACGGTACGCTTGTCCACGGGCCCGACCACGTCGATCCCGCTTGCCGCCATTTCC
CGACCTGCGGTGGTTGCCAGTTGCAGCACCTGTCCGAAGCCGCGCTTTCTGCCTATGTGTTCGACCGCGTGGTCGGTGCG
GCGAAGGGGCAGGGCCTCGAACCTGCCGCCACCACGCCCGCGCACCTCTCGCCGCCCCGCACGCGTCGTCGCGCCACGCT
CCATGCGCAGGCAATCGGCAAGCGCGTTGTCATCGGTTTTCGCGAACAGGGTTCGCACAAGATCGTCGACATGCGCGAAT
GCCATGTGCTCGCGATTGAGCTCTTCGCGCTGGTCGGCCCGTTGCGCGCGCTGCTGGAAGGCTGGAACGACCGCAAGCTC
GCCGTCGACATCGAGCTTGCGCTTTCCGACCAGGGGGCGTCCGTCGGGCTGAAGGGCCTTGCGGCGGAAGGCCTCGCCAA
GACCGAGGCGCTGCTCGATTTCGCCCGCGACAATGGCCTCGCGCGGTTGACGCTCGATGCCGGTTACGGTCCGGAAGGCG
TGTGGGAGCCGGAACCTGTCACTGTGACGCTCGGCGGAACGCCCGTCGCCCTGCCCCCGGGCGCCTTCCTGCAGGCGACG
GCGGATGGCGAGGCCGCGCTTGTCGGCGCGGCGCGCGAGTGGTTGTCGGGTGCTGCGACCGTGGCCGACCTTTTCTCTGG
CCTGGGCACGTTTGCCTTCGCGCTGGCCGGACCCGCGACCAAGGTCCTCGCGGTCGAGGCCGCGCGCGAGCCATACATGG
TCTGCCAGGCAGCGGCGCGGATGAATGGCCGCCCGGTCCATGCGCTTCACCGCGACCTGTTCCGCAATCCCCTGCGTGTC
GAGGAACTGGACCGCTTCGCCGCCGTGCTGATCGACCCGCCCCGTGCCGGCGCGCAGGAACAGGTCGAACAGATCGCTGC
CAGCAAGGTGGCGCGCGTGGTCTATGTCAGTTGCAATCCGGCAAGCTGGGCGCGTGATGCCGTGCGCCTGATCGCAGGTG
GCTACAGGCTGGCGGAAGTGCGCCCAGTTGGCCAGTTCCGGTGGTCGACCCACGTCGAACTGGCCAGCCTGTTCATCCGC
GACTGA

Upstream 100 bases:

>100_bases
GTTTGTGGCTGCACGGCGAGGCGGCCAGGATCGTCGGCTCCGCCTTTACCGCCGGGGAACTGGCCTGCGCCGTGCGTGCG
GCTGTCGAGGAATGTCTTTG

Downstream 100 bases:

>100_bases
CCGGTCAGAACACCAGCCTTGCCGCGTGGTAGATCAGCGCCATGAGCGCGATCGAGGAAAGCCCGAACAGCGAGAAGCGC
ACGACGACCTTGTTGACCGT

Product: (Uracil-5)-methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MNDAGLIVRVAAKGEGATADGRYAALAAPGDTLLPDGTLVHGPDHVDPACRHFPTCGGCQLQHLSEAALSAYVFDRVVGA
AKGQGLEPAATTPAHLSPPRTRRRATLHAQAIGKRVVIGFREQGSHKIVDMRECHVLAIELFALVGPLRALLEGWNDRKL
AVDIELALSDQGASVGLKGLAAEGLAKTEALLDFARDNGLARLTLDAGYGPEGVWEPEPVTVTLGGTPVALPPGAFLQAT
ADGEAALVGAAREWLSGAATVADLFSGLGTFAFALAGPATKVLAVEAAREPYMVCQAAARMNGRPVHALHRDLFRNPLRV
EELDRFAAVLIDPPRAGAQEQVEQIAASKVARVVYVSCNPASWARDAVRLIAGGYRLAEVRPVGQFRWSTHVELASLFIR
D

Sequences:

>Translated_401_residues
MNDAGLIVRVAAKGEGATADGRYAALAAPGDTLLPDGTLVHGPDHVDPACRHFPTCGGCQLQHLSEAALSAYVFDRVVGA
AKGQGLEPAATTPAHLSPPRTRRRATLHAQAIGKRVVIGFREQGSHKIVDMRECHVLAIELFALVGPLRALLEGWNDRKL
AVDIELALSDQGASVGLKGLAAEGLAKTEALLDFARDNGLARLTLDAGYGPEGVWEPEPVTVTLGGTPVALPPGAFLQAT
ADGEAALVGAAREWLSGAATVADLFSGLGTFAFALAGPATKVLAVEAAREPYMVCQAAARMNGRPVHALHRDLFRNPLRV
EELDRFAAVLIDPPRAGAQEQVEQIAASKVARVVYVSCNPASWARDAVRLIAGGYRLAEVRPVGQFRWSTHVELASLFIR
D
>Mature_401_residues
MNDAGLIVRVAAKGEGATADGRYAALAAPGDTLLPDGTLVHGPDHVDPACRHFPTCGGCQLQHLSEAALSAYVFDRVVGA
AKGQGLEPAATTPAHLSPPRTRRRATLHAQAIGKRVVIGFREQGSHKIVDMRECHVLAIELFALVGPLRALLEGWNDRKL
AVDIELALSDQGASVGLKGLAAEGLAKTEALLDFARDNGLARLTLDAGYGPEGVWEPEPVTVTLGGTPVALPPGAFLQAT
ADGEAALVGAAREWLSGAATVADLFSGLGTFAFALAGPATKVLAVEAAREPYMVCQAAARMNGRPVHALHRDLFRNPLRV
EELDRFAAVLIDPPRAGAQEQVEQIAASKVARVVYVSCNPASWARDAVRLIAGGYRLAEVRPVGQFRWSTHVELASLFIR
D

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA M5U methyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI1789148, Length=379, Percent_Identity=31.6622691292876, Blast_Score=142, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010280 [H]

Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 42317; Mature: 42317

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDAGLIVRVAAKGEGATADGRYAALAAPGDTLLPDGTLVHGPDHVDPACRHFPTCGGCQ
CCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCCCCH
LQHLSEAALSAYVFDRVVGAAKGQGLEPAATTPAHLSPPRTRRRATLHAQAIGKRVVIGF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
REQGSHKIVDMRECHVLAIELFALVGPLRALLEGWNDRKLAVDIELALSDQGASVGLKGL
ECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCHHH
AAEGLAKTEALLDFARDNGLARLTLDAGYGPEGVWEPEPVTVTLGGTPVALPPGAFLQAT
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEECCEEEECCCCCEEEEE
ADGEAALVGAAREWLSGAATVADLFSGLGTFAFALAGPATKVLAVEAAREPYMVCQAAAR
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
MNGRPVHALHRDLFRNPLRVEELDRFAAVLIDPPRAGAQEQVEQIAASKVARVVYVSCNP
CCCCCHHHHHHHHHCCCCCHHHHHHEEEEEECCCCCCHHHHHHHHHHHHEEEEEEEECCC
ASWARDAVRLIAGGYRLAEVRPVGQFRWSTHVELASLFIRD
HHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MNDAGLIVRVAAKGEGATADGRYAALAAPGDTLLPDGTLVHGPDHVDPACRHFPTCGGCQ
CCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCCCCH
LQHLSEAALSAYVFDRVVGAAKGQGLEPAATTPAHLSPPRTRRRATLHAQAIGKRVVIGF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
REQGSHKIVDMRECHVLAIELFALVGPLRALLEGWNDRKLAVDIELALSDQGASVGLKGL
ECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCHHH
AAEGLAKTEALLDFARDNGLARLTLDAGYGPEGVWEPEPVTVTLGGTPVALPPGAFLQAT
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEECCEEEECCCCCEEEEE
ADGEAALVGAAREWLSGAATVADLFSGLGTFAFALAGPATKVLAVEAAREPYMVCQAAAR
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
MNGRPVHALHRDLFRNPLRVEELDRFAAVLIDPPRAGAQEQVEQIAASKVARVVYVSCNP
CCCCCHHHHHHHHHCCCCCHHHHHHEEEEEECCCCCCHHHHHHHHHHHHEEEEEEEECCC
ASWARDAVRLIAGGYRLAEVRPVGQFRWSTHVELASLFIRD
HHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA