| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is fyuA [H]
Identifier: 87199708
GI number: 87199708
Start: 1773187
End: 1775418
Strand: Direct
Name: fyuA [H]
Synonym: Saro_1691
Alternate gene names: 87199708
Gene position: 1773187-1775418 (Clockwise)
Preceding gene: 87199707
Following gene: 87199709
Centisome position: 49.79
GC content: 63.58
Gene sequence:
>2232_bases ATGAGGGAACGTCTTTACCGTGGAATCGCGCTGGCAGGGGTAGCCGCCGCATCCATTTTCGCCGCAGCGCCCGTATTGGC GCAGGAAGTGCAATCCGACAGGGCCGTGCCCGACGGCGAGATCGTCGTGACCGCAACCAAGCGTGCGGAAAGCCTGCAAT CGGTCCCCATCTCGGTCTCGGCCATCGGCGGCGATACGCTTGCCAAGGCGCGGGTCGGCAGCGTGGACAGCCTGGTGACC AAGGTCGCCAATCTTCAGCTCACGTCGATCGTGGGCGACAACACGCCGATCTTCGCGCTGCGCGGCGTATCGATGTCCGA CTACAGCCTCAACCAGTCGAGCCCCGTCGCAACCTATTACGACGAAGTCTACAAGGGCAACTTCGCCTTCCTCGGCGTCA CCATGTTCGACCTTGAGCGCGTCGAGGTACTGCGCGGGCCGCAGGGCACGCTCTATGGCAAGAACACCACCGGCGGCGCG GTCAACATCATCGCCAACAGTGCGAAGCTGGGCGAGACCAGCGGCTATTTCAGCGCCGGCTATGGCAACTATGACCGCTT CGACCTCAACGGCGCGGTCAACGTGCCGCTGGGCGAAAAGGCGGCCCTGCGCATCGCGGGCACTTATGCCCGGGCCGATG GCTGGTTCAAGAACGTGGTCCCGGGCAAGCCCGATCTCGCCTCGACCGACGAGTACGCCATCCGAGGCACGCTGAACTTC GAGGCGAGCGATACCGTCCGCTTCGTCCTGCGCGCGTCGACCAGCTACCAGAACCCGCAGAACTATGGCATCTATGCCCA GCCCGAAGACGTCAATCGCCCCGGTCTCGACCGCTGGGAGATCGCCTCGAACATCGCCACCAAGCGCAAGGCGCGCACCT ATTCGGTCGCGCTTACCAGCAACTTCGACGTGTCGGATACGCTGACCGTCACCAGCATCACCTCGTGGGACAAGGGCAAC CTGTTCTTCTACGAGGACACCGACGGCACCGCCTCGCAACTGCTCGAAATCCCCTATACCGACCGCGCCACCCAGTTCGC GCAGGACCTGCGCCTGACCAGCGACACCGGTGGCCCGTTCGATTTCATCCTCGGCGCCTACTTCAACCGCGAGAAGGTCT ACAACGAGACTGCCTTCGAGATCGGCAAGGACATTGACCTTACCGGCGACAACATCGTCACGGCAGACGACTGCGTCGAA GGCCTGACCAACGAAGATGGCAGCGACGATGGCATCGCCTGCCTCTTCCGCAACCGCTTCGACCAGGTGAAGAAGAGCTA CGCGATCTATTCGGACCTCAAGTACCAGGTCACCGATGCGGTGACCCTGCGTGGCGGCCTGCGCTATACCCACGATACGG GCCGGCAGAGCGGCTTCCGCTCCGATGCGCTGGGCGTCGACGGGTCCGAGGTGGCCAACCTGATCCCCTTGTCCTCGCTC AGCTATTCGCAGGACAACCTCTCCGGGAAGATCGGCCTCGACTACAAGCTGGCCGATGGCAACCTGCTCTACGCCAGCGT CAGCCGGGGCTACCGCGCGCCCAGCTTCAACGCGCAGGCCTTCTTCGATCCGTCGGAGCTTTCGGTCGCCAAGCCCGAGC AGGTGACCTCGTACGAAGTCGGCGCGAAGACGCAGTTCCTCGACCGCCGCATCACGCTCAACGTGGCCGGGTTCTACTAC GACTACCGCAACCAGCAGTTCATCAACGTCGACCCGGTACTGGGCTCGCAGACGCTGCTGAACATTCCCAAGTCGCGCAT CTATGGCGGCGAGGCCGAGCTGACGATCCGCGCCAGCGACCGGCTGACCCTGCACAGCGGCATGGGCGTCCTTGCCACAA AGATCCAGCGCGGCAGCGTGAGCGGCGTGGACGTTTCCGGCAACCGCCTGTCCAACGCACCGACCTTTACCTTCAACGCC ACGATCGACCTGACGCTGGTCGATGGCGACATGGGCAAGCTCTCGGTCCACCCGGACGTGGCCTACCAGTCGAGCCAGTT CTTCGAAGTGCTCAACATCCCCCGCCTGCGCCAGACTTCCTACGCGCTGGTCGGCGGGCACATCGACTGGGAAAGCGCCG ACGGGCGCTTCAATGCCTCGGTCTGGGGCAAGAACCTGTCCAACAAGTTCTACTTCACCTCGCGCGTGGACCTGCTGGCG GGCTTCGGCTTCGACTACAACCACATCGGCAATCCGCGCACTTACGGCGTGACAGTGGGCGCGAAGTTCTGA
Upstream 100 bases:
>100_bases ACCCCCTGCGGCTCGAACGTGCCGATATGAGAGCGCGACTGGTCGCAGGGTTCACGCAGGACAGAACAGAACCACACATG CCCTGATTGGGAGGCAAGAC
Downstream 100 bases:
>100_bases CATCCTGAAGAACAAGGCGGCAAAGCCGCCGGGAGAGGAAAATGGCTGACTACAAGCTGCTGATCGGCGGCAACCTCGTC GATGGCGACATGACGATGGA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 743; Mature: 743
Protein sequence:
>743_residues MRERLYRGIALAGVAAASIFAAAPVLAQEVQSDRAVPDGEIVVTATKRAESLQSVPISVSAIGGDTLAKARVGSVDSLVT KVANLQLTSIVGDNTPIFALRGVSMSDYSLNQSSPVATYYDEVYKGNFAFLGVTMFDLERVEVLRGPQGTLYGKNTTGGA VNIIANSAKLGETSGYFSAGYGNYDRFDLNGAVNVPLGEKAALRIAGTYARADGWFKNVVPGKPDLASTDEYAIRGTLNF EASDTVRFVLRASTSYQNPQNYGIYAQPEDVNRPGLDRWEIASNIATKRKARTYSVALTSNFDVSDTLTVTSITSWDKGN LFFYEDTDGTASQLLEIPYTDRATQFAQDLRLTSDTGGPFDFILGAYFNREKVYNETAFEIGKDIDLTGDNIVTADDCVE GLTNEDGSDDGIACLFRNRFDQVKKSYAIYSDLKYQVTDAVTLRGGLRYTHDTGRQSGFRSDALGVDGSEVANLIPLSSL SYSQDNLSGKIGLDYKLADGNLLYASVSRGYRAPSFNAQAFFDPSELSVAKPEQVTSYEVGAKTQFLDRRITLNVAGFYY DYRNQQFINVDPVLGSQTLLNIPKSRIYGGEAELTIRASDRLTLHSGMGVLATKIQRGSVSGVDVSGNRLSNAPTFTFNA TIDLTLVDGDMGKLSVHPDVAYQSSQFFEVLNIPRLRQTSYALVGGHIDWESADGRFNASVWGKNLSNKFYFTSRVDLLA GFGFDYNHIGNPRTYGVTVGAKF
Sequences:
>Translated_743_residues MRERLYRGIALAGVAAASIFAAAPVLAQEVQSDRAVPDGEIVVTATKRAESLQSVPISVSAIGGDTLAKARVGSVDSLVT KVANLQLTSIVGDNTPIFALRGVSMSDYSLNQSSPVATYYDEVYKGNFAFLGVTMFDLERVEVLRGPQGTLYGKNTTGGA VNIIANSAKLGETSGYFSAGYGNYDRFDLNGAVNVPLGEKAALRIAGTYARADGWFKNVVPGKPDLASTDEYAIRGTLNF EASDTVRFVLRASTSYQNPQNYGIYAQPEDVNRPGLDRWEIASNIATKRKARTYSVALTSNFDVSDTLTVTSITSWDKGN LFFYEDTDGTASQLLEIPYTDRATQFAQDLRLTSDTGGPFDFILGAYFNREKVYNETAFEIGKDIDLTGDNIVTADDCVE GLTNEDGSDDGIACLFRNRFDQVKKSYAIYSDLKYQVTDAVTLRGGLRYTHDTGRQSGFRSDALGVDGSEVANLIPLSSL SYSQDNLSGKIGLDYKLADGNLLYASVSRGYRAPSFNAQAFFDPSELSVAKPEQVTSYEVGAKTQFLDRRITLNVAGFYY DYRNQQFINVDPVLGSQTLLNIPKSRIYGGEAELTIRASDRLTLHSGMGVLATKIQRGSVSGVDVSGNRLSNAPTFTFNA TIDLTLVDGDMGKLSVHPDVAYQSSQFFEVLNIPRLRQTSYALVGGHIDWESADGRFNASVWGKNLSNKFYFTSRVDLLA GFGFDYNHIGNPRTYGVTVGAKF >Mature_743_residues MRERLYRGIALAGVAAASIFAAAPVLAQEVQSDRAVPDGEIVVTATKRAESLQSVPISVSAIGGDTLAKARVGSVDSLVT KVANLQLTSIVGDNTPIFALRGVSMSDYSLNQSSPVATYYDEVYKGNFAFLGVTMFDLERVEVLRGPQGTLYGKNTTGGA VNIIANSAKLGETSGYFSAGYGNYDRFDLNGAVNVPLGEKAALRIAGTYARADGWFKNVVPGKPDLASTDEYAIRGTLNF EASDTVRFVLRASTSYQNPQNYGIYAQPEDVNRPGLDRWEIASNIATKRKARTYSVALTSNFDVSDTLTVTSITSWDKGN LFFYEDTDGTASQLLEIPYTDRATQFAQDLRLTSDTGGPFDFILGAYFNREKVYNETAFEIGKDIDLTGDNIVTADDCVE GLTNEDGSDDGIACLFRNRFDQVKKSYAIYSDLKYQVTDAVTLRGGLRYTHDTGRQSGFRSDALGVDGSEVANLIPLSSL SYSQDNLSGKIGLDYKLADGNLLYASVSRGYRAPSFNAQAFFDPSELSVAKPEQVTSYEVGAKTQFLDRRITLNVAGFYY DYRNQQFINVDPVLGSQTLLNIPKSRIYGGEAELTIRASDRLTLHSGMGVLATKIQRGSVSGVDVSGNRLSNAPTFTFNA TIDLTLVDGDMGKLSVHPDVAYQSSQFFEVLNIPRLRQTSYALVGGHIDWESADGRFNASVWGKNLSNKFYFTSRVDLLA GFGFDYNHIGNPRTYGVTVGAKF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=162, Percent_Identity=32.0987654320988, Blast_Score=72, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 80867; Mature: 80867
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRERLYRGIALAGVAAASIFAAAPVLAQEVQSDRAVPDGEIVVTATKRAESLQSVPISVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHCCCEEEE AIGGDTLAKARVGSVDSLVTKVANLQLTSIVGDNTPIFALRGVSMSDYSLNQSSPVATYY ECCCCHHHHHHCCCHHHHHHHHHCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHH DEVYKGNFAFLGVTMFDLERVEVLRGPQGTLYGKNTTGGAVNIIANSAKLGETSGYFSAG HHHHCCCEEEEEEEEEHHHHHHHHCCCCCEEEECCCCCCEEEEEECCCCCCCCCCEEECC YGNYDRFDLNGAVNVPLGEKAALRIAGTYARADGWFKNVVPGKPDLASTDEYAIRGTLNF CCCCCEEECCCEEECCCCCCEEEEEEEEEECCCCCHHHCCCCCCCCCCCCCEEEEEEEEC EASDTVRFVLRASTSYQNPQNYGIYAQPEDVNRPGLDRWEIASNIATKRKARTYSVALTS CCCCEEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEEC NFDVSDTLTVTSITSWDKGNLFFYEDTDGTASQLLEIPYTDRATQFAQDLRLTSDTGGPF CCCCCCEEEEEEEECCCCCCEEEEECCCCCHHHEEECCCCCHHHHHHHHCEEECCCCCCH DFILGAYFNREKVYNETAFEIGKDIDLTGDNIVTADDCVEGLTNEDGSDDGIACLFRNRF HHHHHHHHCHHHHCCCHHHHCCCCEEECCCCEEEHHHHHHHCCCCCCCCCCEEEEHHHHH DQVKKSYAIYSDLKYQVTDAVTLRGGLRYTHDTGRQSGFRSDALGVDGSEVANLIPLSSL HHHHHHHHHHHCCEEEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHEEECCCC SYSQDNLSGKIGLDYKLADGNLLYASVSRGYRAPSFNAQAFFDPSELSVAKPEQVTSYEV CCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEECHHHCCCCCCCCCCEEEC GAKTQFLDRRITLNVAGFYYDYRNQQFINVDPVLGSQTLLNIPKSRIYGGEAELTIRASD CCCCEEECEEEEEEEEEEEEECCCCEEEEECCCCCCHHHHCCCHHHCCCCCEEEEEEECC RLTLHSGMGVLATKIQRGSVSGVDVSGNRLSNAPTFTFNATIDLTLVDGDMGKLSVHPDV EEEEECCCCEEEEEEECCCCCCEECCCCCCCCCCEEEEEEEEEEEEEECCCCEEEECCCC AYQSSQFFEVLNIPRLRQTSYALVGGHIDWESADGRFNASVWGKNLSNKFYFTSRVDLLA CCCCHHHHHHHCCCCCCCCCEEEEECEEEECCCCCEEEEEECCCCCCCEEEEEEEEEEEE GFGFDYNHIGNPRTYGVTVGAKF ECCCCCCCCCCCEEEEEEEEECC >Mature Secondary Structure MRERLYRGIALAGVAAASIFAAAPVLAQEVQSDRAVPDGEIVVTATKRAESLQSVPISVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHCCCEEEE AIGGDTLAKARVGSVDSLVTKVANLQLTSIVGDNTPIFALRGVSMSDYSLNQSSPVATYY ECCCCHHHHHHCCCHHHHHHHHHCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHH DEVYKGNFAFLGVTMFDLERVEVLRGPQGTLYGKNTTGGAVNIIANSAKLGETSGYFSAG HHHHCCCEEEEEEEEEHHHHHHHHCCCCCEEEECCCCCCEEEEEECCCCCCCCCCEEECC YGNYDRFDLNGAVNVPLGEKAALRIAGTYARADGWFKNVVPGKPDLASTDEYAIRGTLNF CCCCCEEECCCEEECCCCCCEEEEEEEEEECCCCCHHHCCCCCCCCCCCCCEEEEEEEEC EASDTVRFVLRASTSYQNPQNYGIYAQPEDVNRPGLDRWEIASNIATKRKARTYSVALTS CCCCEEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEEC NFDVSDTLTVTSITSWDKGNLFFYEDTDGTASQLLEIPYTDRATQFAQDLRLTSDTGGPF CCCCCCEEEEEEEECCCCCCEEEEECCCCCHHHEEECCCCCHHHHHHHHCEEECCCCCCH DFILGAYFNREKVYNETAFEIGKDIDLTGDNIVTADDCVEGLTNEDGSDDGIACLFRNRF HHHHHHHHCHHHHCCCHHHHCCCCEEECCCCEEEHHHHHHHCCCCCCCCCCEEEEHHHHH DQVKKSYAIYSDLKYQVTDAVTLRGGLRYTHDTGRQSGFRSDALGVDGSEVANLIPLSSL HHHHHHHHHHHCCEEEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHEEECCCC SYSQDNLSGKIGLDYKLADGNLLYASVSRGYRAPSFNAQAFFDPSELSVAKPEQVTSYEV CCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEECHHHCCCCCCCCCCEEEC GAKTQFLDRRITLNVAGFYYDYRNQQFINVDPVLGSQTLLNIPKSRIYGGEAELTIRASD CCCCEEECEEEEEEEEEEEEECCCCEEEEECCCCCCHHHHCCCHHHCCCCCEEEEEEECC RLTLHSGMGVLATKIQRGSVSGVDVSGNRLSNAPTFTFNATIDLTLVDGDMGKLSVHPDV EEEEECCCCEEEEEEECCCCCCEECCCCCCCCCCEEEEEEEEEEEEEECCCCEEEECCCC AYQSSQFFEVLNIPRLRQTSYALVGGHIDWESADGRFNASVWGKNLSNKFYFTSRVDLLA CCCCHHHHHHHCCCCCCCCCEEEEECEEEECCCCCEEEEEECCCCCCCEEEEEEEEEEEE GFGFDYNHIGNPRTYGVTVGAKF ECCCCCCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA