Click here to switch to the map view.

The map label for this gene is yhaJ [H]

Identifier: 87199656

GI number: 87199656

Start: 1714489

End: 1715418

Strand: Direct

Name: yhaJ [H]

Synonym: Saro_1639

Alternate gene names: 87199656

Gene position: 1714489-1715418 (Clockwise)

Preceding gene: 87199650

Following gene: 87199663

Centisome position: 48.14

GC content: 68.6

Gene sequence:

>930_bases
GTGGACGTCGGGCAACCAACTCTCGATCAGTTGCGCCTGTTCCTCGCCGTGGTGGACGAGGGCAGCTTCAACGGGGCGGC
CCGCAAGCTGGGCCGCGCGATTTCGGCCGTTAGTTATGGCATCACCACGCTCGAGGCGCAGCTTGGCGTGACGCTGTTCG
AGCGCGAGGGGTCGCGCAAGCCGGTGCTGAGCGATGCGGGCAAGGCCATGCTGGCGCAGGCACGGGCGGTGTCGGACGAC
GTGGACGCGCTTGTCGCGGGGGTCAGGAGCTTCAACCAGGGCCTCGAAAGCGAACTCGGTCTGGCGCTCGACGTTATGTT
CCCGACCCATCTCGTCGCCGAAGTGCTGCGCGAGTTCCAGCAGGTGTTCCCGACCGTCCAGTTGCGCCTCCATGTCGAGG
CACTGGGCGCGATTGCTGCGTTGGTGGTCGAAGGGGAGGCGGAACTGGGTATCGGCGGCCCGGAGCTTGTCGCTTTGCCC
GAACTGGAGCGGGTGGCCATCGGTTCGGTCGAACTGATCCCCGTTGCGGCGCCCAGCCATGCGTTGGCGCGGATGGAGAC
CATCCCCCCAGGCGAGGCGCGCAAGCATCGCCAGCTCGTGCTGACGGATCGCTCGCGGCTTACCGATGGGCGCGATTTCT
CGGTCGTCGCGGCCAGCACCTGGCGCCTCGGCGATCTGGGCGCGCGCCATGCGCTGATGCGAGAGGGGATCGGGTGGGGC
AACATGCCGCGCCACCTGGTCGATGCCGACATTGCATCGGGCAGGCTGGTGAGGCTCGCGATCCCCGAAGCACCGGGCAT
GGCTTATACGTTCCACGCGCTCTGGCGGCGGGATTGCCCGGTGGGTCCGGCGCGAGCCTGGATGCTCGATGCCCTGCGCG
CGCGGCTGGCTCGCTGTCCGGACGCGGAACCGCCCCGCCAGTGGGGTTGA

Upstream 100 bases:

>100_bases
GTTGGATGCCGTCCTGTTGAGCTCCAGATAGGGCTTGCGATCCGATCGGATAATTCCGATAAAATGAACCAAGATATTCG
GATAATTCGAAAGGTCGGCT

Downstream 100 bases:

>100_bases
CGGGGCGGAACAGGTGTTCGTGAGGTCTTGAAATCAGCAGCCGTTGCTCTTCCGCTTGAACGCGGCATTGTCGTTCGCGC
GGATCTTGGCAATCTGGAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MDVGQPTLDQLRLFLAVVDEGSFNGAARKLGRAISAVSYGITTLEAQLGVTLFEREGSRKPVLSDAGKAMLAQARAVSDD
VDALVAGVRSFNQGLESELGLALDVMFPTHLVAEVLREFQQVFPTVQLRLHVEALGAIAALVVEGEAELGIGGPELVALP
ELERVAIGSVELIPVAAPSHALARMETIPPGEARKHRQLVLTDRSRLTDGRDFSVVAASTWRLGDLGARHALMREGIGWG
NMPRHLVDADIASGRLVRLAIPEAPGMAYTFHALWRRDCPVGPARAWMLDALRARLARCPDAEPPRQWG

Sequences:

>Translated_309_residues
MDVGQPTLDQLRLFLAVVDEGSFNGAARKLGRAISAVSYGITTLEAQLGVTLFEREGSRKPVLSDAGKAMLAQARAVSDD
VDALVAGVRSFNQGLESELGLALDVMFPTHLVAEVLREFQQVFPTVQLRLHVEALGAIAALVVEGEAELGIGGPELVALP
ELERVAIGSVELIPVAAPSHALARMETIPPGEARKHRQLVLTDRSRLTDGRDFSVVAASTWRLGDLGARHALMREGIGWG
NMPRHLVDADIASGRLVRLAIPEAPGMAYTFHALWRRDCPVGPARAWMLDALRARLARCPDAEPPRQWG
>Mature_309_residues
MDVGQPTLDQLRLFLAVVDEGSFNGAARKLGRAISAVSYGITTLEAQLGVTLFEREGSRKPVLSDAGKAMLAQARAVSDD
VDALVAGVRSFNQGLESELGLALDVMFPTHLVAEVLREFQQVFPTVQLRLHVEALGAIAALVVEGEAELGIGGPELVALP
ELERVAIGSVELIPVAAPSHALARMETIPPGEARKHRQLVLTDRSRLTDGRDFSVVAASTWRLGDLGARHALMREGIGWG
NMPRHLVDADIASGRLVRLAIPEAPGMAYTFHALWRRDCPVGPARAWMLDALRARLARCPDAEPPRQWG

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=295, Percent_Identity=29.4915254237288, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082024, Length=307, Percent_Identity=28.3387622149837, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1786713, Length=266, Percent_Identity=27.4436090225564, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1786508, Length=256, Percent_Identity=24.609375, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787949, Length=294, Percent_Identity=27.5510204081633, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=200, Percent_Identity=28, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1786401, Length=310, Percent_Identity=24.8387096774194, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788481, Length=315, Percent_Identity=26.3492063492064, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=180, Percent_Identity=29.4444444444444, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33317; Mature: 33317

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVGQPTLDQLRLFLAVVDEGSFNGAARKLGRAISAVSYGITTLEAQLGVTLFEREGSRK
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCC
PVLSDAGKAMLAQARAVSDDVDALVAGVRSFNQGLESELGLALDVMFPTHLVAEVLREFQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHH
QVFPTVQLRLHVEALGAIAALVVEGEAELGIGGPELVALPELERVAIGSVELIPVAAPSH
HHCCHHEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHCCCCEEEEEECCCCH
ALARMETIPPGEARKHRQLVLTDRSRLTDGRDFSVVAASTWRLGDLGARHALMREGIGWG
HHHHHCCCCCCCCCCCCEEEEECHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC
NMPRHLVDADIASGRLVRLAIPEAPGMAYTFHALWRRDCPVGPARAWMLDALRARLARCP
CCCHHHHHCCCCCCCEEEEECCCCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
DAEPPRQWG
CCCCCCCCC
>Mature Secondary Structure
MDVGQPTLDQLRLFLAVVDEGSFNGAARKLGRAISAVSYGITTLEAQLGVTLFEREGSRK
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCC
PVLSDAGKAMLAQARAVSDDVDALVAGVRSFNQGLESELGLALDVMFPTHLVAEVLREFQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHH
QVFPTVQLRLHVEALGAIAALVVEGEAELGIGGPELVALPELERVAIGSVELIPVAAPSH
HHCCHHEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHCCCCEEEEEECCCCH
ALARMETIPPGEARKHRQLVLTDRSRLTDGRDFSVVAASTWRLGDLGARHALMREGIGWG
HHHHHCCCCCCCCCCCCEEEEECHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC
NMPRHLVDADIASGRLVRLAIPEAPGMAYTFHALWRRDCPVGPARAWMLDALRARLARCP
CCCHHHHHCCCCCCCEEEEECCCCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
DAEPPRQWG
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]