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The map label for this gene is hofQ [C]

Identifier: 87199534

GI number: 87199534

Start: 1560594

End: 1562147

Strand: Direct

Name: hofQ [C]

Synonym: Saro_1516

Alternate gene names: 87199534

Gene position: 1560594-1562147 (Clockwise)

Preceding gene: 87199533

Following gene: 87199535

Centisome position: 43.82

GC content: 60.55

Gene sequence:

>1554_bases
ATGTTTTCTAAGAGCCGACGCTACCTTGCCATCGGCTCCGCGCTTGCCGCGGCACTGTGCGCAACCACCAATGCGACTCG
TGCCCAGGGCATCACAGCGGAAAACCTTCACGCTGGCACGCTGGAGGTGCCGGTCAACAAGAGCCAGGTTGTCAGCACCG
ATCGCACCATTGCCAAAGCGCTGGTCGGTAACGACGACATTGCCGATGTTCTCCCGGTCACCACCAGGTCCATCTACGTG
CTGGGCAAGAAGATGGGCACGACCAGCCTGACGCTGTACGATGCCACTGGCCGCGTACTTTCTATCATGGATGTTGCGGT
GGGCCCTGACGTGGAGGGGCTGCGCTCGCAGCTCAAGACTTTTGTCCCCAACGACAAGATCGATGCGCGCCTCTCGAACG
ATGCAATCGTGCTGAGCGGCCTCGTCAATGATCCCGGGGCTATCGATCGCGCGGTGCAACTGGCGCGGACCTATGCCGGC
GACAAGGTCGTGAACCTCATTTCGCTTGGTTCCAGCCAGCAGGTGATGCTGGAAGTGAAGTTTGCCGAAGTGAACCGCAC
CGCGGGTTTCGACGTAGGTGTCAGCGGTTTCGCCAGCAAGGGCACGTTTGAATCCGCCATCGGGAAGGGAGCTCAACTCG
TCCCTGGCGCAGATGTGACGGTGAGCGGCAACTCTGGCGGTGTATCCACATCCACAACGATTCCCGGCGCTTCCATTCTC
AAGCTGAGTTCCATCACGGGCTCGTTCGGGATCTTCCGCAAATCCTTTTCGATCGACGGTCTGGGCATCGATGCTGTCCT
GAACGCCCTCGAAACCAAGGGCATGGCGAAAACGCTGGCCCAACCAACGCTGTTGGCCCTTTCGGGGGAGCGCGCTTCGT
TCCTTGCGGGCGGAGAGTTCCCGGTGCCAGTGGTGCAAAGCGGCACGACCGGCACCGGGAACGGCAATGGCGGCGCGATA
ACCGTTGAATTCAAGCCGTTCGGCGTGAGCTTGGGCTTTACCCCGACCGTGCTTGGAGACAAGACGATCAACCTTCTGGT
TGAACCGGAAGTCAGCGCTATCGACCCGACTGCATCGTTGACTGTCGGCAGTATCACGATCCCGGGGCTTCGTACCCGCC
GCGCCAGCACGACGCTGGAATTGCGTGATGGCGAAAGCTTTGCGATCGCCGGATTGCTGCAGAAGGACTTCAAGACCAGT
GTTCAGCAGTTGCCGCTGCTTGGGTCGTTGCCGATCATAGGGAGCTTGTTCCGCTCGAGCGCATTTTCGAAGGGCGAGAC
TGAACTCCTCATTGTCGTCACGCCGCGGCTAGTGTCGCCGATCAAGCCCGAACAAGTTCGTCTGCCGACGGATGCCGTTA
CCGATCCTTCGGCTGCCAGTACGATCTTCCTGGGTGAGCCGTCATTCGGCAAGAAACTGGCGCCCACCAAGCCGCAGGAC
GGAAGTGCGGCACCGCTTTCGAGCGATGCTACGCCGATCCCTCCCCAGGCGAGCGTTTCGGAACTGCCCGCCCTGCCGGC
CAGCGATGCAAGGAATGCGGACTATGCGTACTGA

Upstream 100 bases:

>100_bases
GCATCACCCGCACCTGCGGCTGTGGCGATGCCACCGCGCTATTACGGCCCGACCATGACGGTTTATCGCAAGGGCAAGCC
AACCGACTATGAGGTGCGCC

Downstream 100 bases:

>100_bases
ACTCGTCGCTATTTCCTGCGCTCTGTTGCTCAGCGGATGCACCGCCGAGCAAGGTGGGCTCTACAGCGCCGGGGCTGCAT
TCGGCGAGGCGAACCGCCAG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MFSKSRRYLAIGSALAAALCATTNATRAQGITAENLHAGTLEVPVNKSQVVSTDRTIAKALVGNDDIADVLPVTTRSIYV
LGKKMGTTSLTLYDATGRVLSIMDVAVGPDVEGLRSQLKTFVPNDKIDARLSNDAIVLSGLVNDPGAIDRAVQLARTYAG
DKVVNLISLGSSQQVMLEVKFAEVNRTAGFDVGVSGFASKGTFESAIGKGAQLVPGADVTVSGNSGGVSTSTTIPGASIL
KLSSITGSFGIFRKSFSIDGLGIDAVLNALETKGMAKTLAQPTLLALSGERASFLAGGEFPVPVVQSGTTGTGNGNGGAI
TVEFKPFGVSLGFTPTVLGDKTINLLVEPEVSAIDPTASLTVGSITIPGLRTRRASTTLELRDGESFAIAGLLQKDFKTS
VQQLPLLGSLPIIGSLFRSSAFSKGETELLIVVTPRLVSPIKPEQVRLPTDAVTDPSAASTIFLGEPSFGKKLAPTKPQD
GSAAPLSSDATPIPPQASVSELPALPASDARNADYAY

Sequences:

>Translated_517_residues
MFSKSRRYLAIGSALAAALCATTNATRAQGITAENLHAGTLEVPVNKSQVVSTDRTIAKALVGNDDIADVLPVTTRSIYV
LGKKMGTTSLTLYDATGRVLSIMDVAVGPDVEGLRSQLKTFVPNDKIDARLSNDAIVLSGLVNDPGAIDRAVQLARTYAG
DKVVNLISLGSSQQVMLEVKFAEVNRTAGFDVGVSGFASKGTFESAIGKGAQLVPGADVTVSGNSGGVSTSTTIPGASIL
KLSSITGSFGIFRKSFSIDGLGIDAVLNALETKGMAKTLAQPTLLALSGERASFLAGGEFPVPVVQSGTTGTGNGNGGAI
TVEFKPFGVSLGFTPTVLGDKTINLLVEPEVSAIDPTASLTVGSITIPGLRTRRASTTLELRDGESFAIAGLLQKDFKTS
VQQLPLLGSLPIIGSLFRSSAFSKGETELLIVVTPRLVSPIKPEQVRLPTDAVTDPSAASTIFLGEPSFGKKLAPTKPQD
GSAAPLSSDATPIPPQASVSELPALPASDARNADYAY
>Mature_517_residues
MFSKSRRYLAIGSALAAALCATTNATRAQGITAENLHAGTLEVPVNKSQVVSTDRTIAKALVGNDDIADVLPVTTRSIYV
LGKKMGTTSLTLYDATGRVLSIMDVAVGPDVEGLRSQLKTFVPNDKIDARLSNDAIVLSGLVNDPGAIDRAVQLARTYAG
DKVVNLISLGSSQQVMLEVKFAEVNRTAGFDVGVSGFASKGTFESAIGKGAQLVPGADVTVSGNSGGVSTSTTIPGASIL
KLSSITGSFGIFRKSFSIDGLGIDAVLNALETKGMAKTLAQPTLLALSGERASFLAGGEFPVPVVQSGTTGTGNGNGGAI
TVEFKPFGVSLGFTPTVLGDKTINLLVEPEVSAIDPTASLTVGSITIPGLRTRRASTTLELRDGESFAIAGLLQKDFKTS
VQQLPLLGSLPIIGSLFRSSAFSKGETELLIVVTPRLVSPIKPEQVRLPTDAVTDPSAASTIFLGEPSFGKKLAPTKPQD
GSAAPLSSDATPIPPQASVSELPALPASDARNADYAY

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=266, Percent_Identity=29.3233082706767, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI87082242, Length=267, Percent_Identity=26.9662921348315, Blast_Score=77, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 53263; Mature: 53263

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSKSRRYLAIGSALAAALCATTNATRAQGITAENLHAGTLEVPVNKSQVVSTDRTIAKA
CCCCCCCEEEEHHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCHHHEECCHHHHHHH
LVGNDDIADVLPVTTRSIYVLGKKMGTTSLTLYDATGRVLSIMDVAVGPDVEGLRSQLKT
HHCCCCHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEHHCCCCHHHHHHHHHH
FVPNDKIDARLSNDAIVLSGLVNDPGAIDRAVQLARTYAGDKVVNLISLGSSQQVMLEVK
HCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
FAEVNRTAGFDVGVSGFASKGTFESAIGKGAQLVPGADVTVSGNSGGVSTSTTIPGASIL
EEECCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCCEEEECCCCCCCCCCCCCCHHEE
KLSSITGSFGIFRKSFSIDGLGIDAVLNALETKGMAKTLAQPTLLALSGERASFLAGGEF
EEECCCCCHHHEEEECCCCCCCHHHHHHHHHHCCHHHHHCCCEEEEECCCCCEEEECCCC
PVPVVQSGTTGTGNGNGGAITVEFKPFGVSLGFTPTVLGDKTINLLVEPEVSAIDPTASL
CCCEEECCCCCCCCCCCCEEEEEEEECEEECCCCCEEECCCEEEEEECCCCCCCCCCCCE
TVGSITIPGLRTRRASTTLELRDGESFAIAGLLQKDFKTSVQQLPLLGSLPIIGSLFRSS
EEEEEECCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AFSKGETELLIVVTPRLVSPIKPEQVRLPTDAVTDPSAASTIFLGEPSFGKKLAPTKPQD
CCCCCCCEEEEEECCHHCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
GSAAPLSSDATPIPPQASVSELPALPASDARNADYAY
CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFSKSRRYLAIGSALAAALCATTNATRAQGITAENLHAGTLEVPVNKSQVVSTDRTIAKA
CCCCCCCEEEEHHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCHHHEECCHHHHHHH
LVGNDDIADVLPVTTRSIYVLGKKMGTTSLTLYDATGRVLSIMDVAVGPDVEGLRSQLKT
HHCCCCHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEHHCCCCHHHHHHHHHH
FVPNDKIDARLSNDAIVLSGLVNDPGAIDRAVQLARTYAGDKVVNLISLGSSQQVMLEVK
HCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
FAEVNRTAGFDVGVSGFASKGTFESAIGKGAQLVPGADVTVSGNSGGVSTSTTIPGASIL
EEECCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCCEEEECCCCCCCCCCCCCCHHEE
KLSSITGSFGIFRKSFSIDGLGIDAVLNALETKGMAKTLAQPTLLALSGERASFLAGGEF
EEECCCCCHHHEEEECCCCCCCHHHHHHHHHHCCHHHHHCCCEEEEECCCCCEEEECCCC
PVPVVQSGTTGTGNGNGGAITVEFKPFGVSLGFTPTVLGDKTINLLVEPEVSAIDPTASL
CCCEEECCCCCCCCCCCCEEEEEEEECEEECCCCCEEECCCEEEEEECCCCCCCCCCCCE
TVGSITIPGLRTRRASTTLELRDGESFAIAGLLQKDFKTSVQQLPLLGSLPIIGSLFRSS
EEEEEECCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AFSKGETELLIVVTPRLVSPIKPEQVRLPTDAVTDPSAASTIFLGEPSFGKKLAPTKPQD
CCCCCCCEEEEEECCHHCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
GSAAPLSSDATPIPPQASVSELPALPASDARNADYAY
CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]