| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is mdoC [H]
Identifier: 87199440
GI number: 87199440
Start: 1460403
End: 1461563
Strand: Reverse
Name: mdoC [H]
Synonym: Saro_1419
Alternate gene names: 87199440
Gene position: 1461563-1460403 (Counterclockwise)
Preceding gene: 87199441
Following gene: 87199437
Centisome position: 41.04
GC content: 66.41
Gene sequence:
>1161_bases ATGACGCCGCCCTCCGGACGCCTTCATCACCTCGACGCCGCACGTGCGCTGCTGCTCCTGCTCGGGCTGCCGTTCCACGT CGCAACCAAGGCAATATTCGAAAGCGACCCGCCGGCGCTCGACTTCCAGCAATCGCTGGTGATCGGGGGCTGGGCCTCGC TCACCCACGTTTTCCGGATGTTCGCCTTCTTCATGCTGGCTGGCTACTTCGCCGGCATGATCCGAGAGCGAAAGGGCGCT GGCGCATGGCTGGCCGAACGCAGCCGCCGCCTTGGCCTGCCGTTTCTCGCGAGCATCCTGACGCTCGGTGCAATTCAGTA CCAGCTTCAGGACGGCCTTCTCCACAAGCCGTCGCCAAGGTTCCTCGGCGCACCGCTGGCACTGGACCACTTGTGGTTCC TCGTCGTCCTGCTTGGCTTCTGCGCCGTTTATGCCGCTATTCCTGGATCGCGTATTCCCCAGGGGGGGCGCACGGGCCGG GCCTTGTGCCTGTCGGCGCCGGGCAGCCTCGCGCTCCTTGCCGCACTCGCCTTGTGGGGCCTCGTCCGCTATGCCGCCGA ACAGGTCCCGGCCATTCCCGACGCGCCGAGCGAAACCCTGCTGTGGCAGCAGTTCCTGTTTCACTCCGCACCGTTCGCGC TGGGAGTCGTGGCATGGCACGCCCGCATAGGAGAGCGGATCTTCAACTTGCGCAGCCGCTGGATCGTGCCGGCCATTCTC CTGCTGCTAATCCCCTATTTCCCGCTCGATCCGCTGGTCCGCCCGGCGCTGGGCAAGGAAATCTACCCGGATCTGGCCGG CACCCTGGTCCTGCGCGCAATCGATCTTCCGCTGGCCTACCTGATGTCGCTTGGCCTGTTCCGGCTGCTTGCCGAACTCG TGCGCGGGCCCAGCCGCGTCGTCAGCTTCTTCGTCGACGGCGCGCTCGCCATCTACCTGTTCCACCTCGTCTGGGCGATG CTGGTCCTGCCCTGGGTCCGGGCGCTGCCGATCGCGGCGGAAGCGCAATGGATGCTAGCCTCACTCTTGGTGCTAGGCCT GTCGATGGCAAGCTACCTCGCCGCACGCTCGACCCGGCTTACCTCGGTGCTGTTCTGCGGGGCCGCGCCGAAACGACATC AGCCGAAGCACACTACTCCCGCCCGGCCAGCACGCCCCTGA
Upstream 100 bases:
>100_bases GACGCCCTTGCCGGTGTCATGGGCGCCCTCGGCGCACCGCCGGAAGGGTCCTACGAAGAATATCTCGCCTGAAGTTGCGC CAGTGGCTAGGGGGGCGGGC
Downstream 100 bases:
>100_bases TCACCAGCGCGAACGCGCCTACCATCGCGAAGGACAGCGCGAACAGGAGGCCGCCGACGAGCCACTCCTGCCAGTCAGCT CCGGTGTGGCCGGCAGCCGT
Product: acyltransferase 3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MTPPSGRLHHLDAARALLLLLGLPFHVATKAIFESDPPALDFQQSLVIGGWASLTHVFRMFAFFMLAGYFAGMIRERKGA GAWLAERSRRLGLPFLASILTLGAIQYQLQDGLLHKPSPRFLGAPLALDHLWFLVVLLGFCAVYAAIPGSRIPQGGRTGR ALCLSAPGSLALLAALALWGLVRYAAEQVPAIPDAPSETLLWQQFLFHSAPFALGVVAWHARIGERIFNLRSRWIVPAIL LLLIPYFPLDPLVRPALGKEIYPDLAGTLVLRAIDLPLAYLMSLGLFRLLAELVRGPSRVVSFFVDGALAIYLFHLVWAM LVLPWVRALPIAAEAQWMLASLLVLGLSMASYLAARSTRLTSVLFCGAAPKRHQPKHTTPARPARP
Sequences:
>Translated_386_residues MTPPSGRLHHLDAARALLLLLGLPFHVATKAIFESDPPALDFQQSLVIGGWASLTHVFRMFAFFMLAGYFAGMIRERKGA GAWLAERSRRLGLPFLASILTLGAIQYQLQDGLLHKPSPRFLGAPLALDHLWFLVVLLGFCAVYAAIPGSRIPQGGRTGR ALCLSAPGSLALLAALALWGLVRYAAEQVPAIPDAPSETLLWQQFLFHSAPFALGVVAWHARIGERIFNLRSRWIVPAIL LLLIPYFPLDPLVRPALGKEIYPDLAGTLVLRAIDLPLAYLMSLGLFRLLAELVRGPSRVVSFFVDGALAIYLFHLVWAM LVLPWVRALPIAAEAQWMLASLLVLGLSMASYLAARSTRLTSVLFCGAAPKRHQPKHTTPARPARP >Mature_385_residues TPPSGRLHHLDAARALLLLLGLPFHVATKAIFESDPPALDFQQSLVIGGWASLTHVFRMFAFFMLAGYFAGMIRERKGAG AWLAERSRRLGLPFLASILTLGAIQYQLQDGLLHKPSPRFLGAPLALDHLWFLVVLLGFCAVYAAIPGSRIPQGGRTGRA LCLSAPGSLALLAALALWGLVRYAAEQVPAIPDAPSETLLWQQFLFHSAPFALGVVAWHARIGERIFNLRSRWIVPAILL LLIPYFPLDPLVRPALGKEIYPDLAGTLVLRAIDLPLAYLMSLGLFRLLAELVRGPSRVVSFFVDGALAIYLFHLVWAML VLPWVRALPIAAEAQWMLASLLVLGLSMASYLAARSTRLTSVLFCGAAPKRHQPKHTTPARPARP
Specific function: Necessary for the succinyl substitution of periplasmic glucans. Could catalyze the transfer of succinyl residues from the cytoplasmic side of the membrane to the nascent glucan backbones on the periplasmic side of the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acyltransferase 3 family. OpgC subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787285, Length=398, Percent_Identity=24.8743718592965, Blast_Score=69, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002656 [H]
Pfam domain/function: PF01757 Acyl_transf_3 [H]
EC number: 2.1.-.- [C]
Molecular weight: Translated: 42257; Mature: 42126
Theoretical pI: Translated: 10.80; Mature: 10.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPPSGRLHHLDAARALLLLLGLPFHVATKAIFESDPPALDFQQSLVIGGWASLTHVFRM CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH FAFFMLAGYFAGMIRERKGAGAWLAERSRRLGLPFLASILTLGAIQYQLQDGLLHKPSPR HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC FLGAPLALDHLWFLVVLLGFCAVYAAIPGSRIPQGGRTGRALCLSAPGSLALLAALALWG CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH LVRYAAEQVPAIPDAPSETLLWQQFLFHSAPFALGVVAWHARIGERIFNLRSRWIVPAIL HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLIPYFPLDPLVRPALGKEIYPDLAGTLVLRAIDLPLAYLMSLGLFRLLAELVRGPSRV HHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH VSFFVDGALAIYLFHLVWAMLVLPWVRALPIAAEAQWMLASLLVLGLSMASYLAARSTRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSVLFCGAAPKRHQPKHTTPARPARP HHHHEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TPPSGRLHHLDAARALLLLLGLPFHVATKAIFESDPPALDFQQSLVIGGWASLTHVFRM CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH FAFFMLAGYFAGMIRERKGAGAWLAERSRRLGLPFLASILTLGAIQYQLQDGLLHKPSPR HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC FLGAPLALDHLWFLVVLLGFCAVYAAIPGSRIPQGGRTGRALCLSAPGSLALLAALALWG CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH LVRYAAEQVPAIPDAPSETLLWQQFLFHSAPFALGVVAWHARIGERIFNLRSRWIVPAIL HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLIPYFPLDPLVRPALGKEIYPDLAGTLVLRAIDLPLAYLMSLGLFRLLAELVRGPSRV HHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH VSFFVDGALAIYLFHLVWAMLVLPWVRALPIAAEAQWMLASLLVLGLSMASYLAARSTRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSVLFCGAAPKRHQPKHTTPARPARP HHHHEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA