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The map label for this gene is yciR [C]

Identifier: 87199424

GI number: 87199424

Start: 1445564

End: 1447267

Strand: Reverse

Name: yciR [C]

Synonym: Saro_1403

Alternate gene names: 87199424

Gene position: 1447267-1445564 (Counterclockwise)

Preceding gene: 87199434

Following gene: 87199423

Centisome position: 40.64

GC content: 64.38

Gene sequence:

>1704_bases
GTGGTTGTCCCAGGGGGAACCGGCCGTGTTGCCGGAACCGGGGCTAGCGAAGGCAGGGGTATGGCGACGGCGCCTGACAG
ACTCGATGAAGCAGGCAGGGCGGAAGATCAGGCCCACAACGATTTGCTTGGCTTGGGCATCATCATTGCCGCAGTCCTCC
TTTTCGTCGCCAATGGCTCGACCGTTCTGGCGGACTTCGTACATTCGCTGATGACCGGCAGCCGCCCGCGCGAACCAATG
CTCGGCACGGCCCTCATCCTAAACATCGCGCTGCTCCTGTTCGGCTGGCGGCGCTACGTCGACCTGACGCGCGAGGTAGG
GCAACGCCGCGAGGCGGAAGAGACGGCGCACAAGCTGGCGCACACCGATCCCCTCACCGGCTGCCTCAATCGGCGCAGCA
TGGGGCCGGCGGTCGAACAGATGGTCAGCACCGCCCGCACCAGCGGGCACGAGGTCGTCGTGATGATGATGGACCTCGAC
AACTTCAAGCGCTCCAACGACGTGCACGGTCACCAGGCCGGTGACGCCGTGCTCCTCCACACGGCGGATCGCATCCGGGC
CATCCTTCCCGCCGGCTCGATCATCGCACGCCTCGGCGGCGACGAATTCGCCTGCGCGGCGATCTTCGATCCCGACCACG
TCGAATCCATCGACCGCCTCATCCTGCGCATGAACGAGGCGGTGGCGATGCCCGTGCGGGTTGACGGTCTCATGCTCGAA
GTAACCGCATCGATCGGGCTAGCCGCGACCAGCGCGGCCGATGCAGGCGCGCCGCCGGCGCTGGCCGACACGCTTCTCCA
CCGCGCCGACCTCGCCATGTACCAGGCCAAGAAGGCTGGCCGGAACCGTTACTGCTGGTTCGAGCAGAACATGGAGAGCG
AACTGCGCTTCCGCAGCGAGCTGGAGCGCGAAATCCGGGAAGGCGTCGCACGCGGCGAATTCGTGCCGTACTACGAAAAG
CAGATCGATCTCGAAACCGGCGAGCTGACCGGCTTCGAAATGCTCGCACGGTGGCGCAGTCCGCGCCACGGCCTGCTGTC
TCCGGAAATCTTCATCCCGATCGCCGAGGAAATCGGCCTCATCTCCGAACTGTCGGAAAACCTGATCCGTCAGGCCCTGC
GCGATGCACGTGATTGGGACCCGACCCTGACCCTGTCGGTCAACATCTCACCAATCCAGCTACGCGACCCGTGGTTCGCG
CAGAAGCTGCTCAAGCTGCTGGTCGAGGCGAACTTTCCGCCGCACAGGCTCGACATCGAAATCACCGAGACCTGTCTGCA
CGAGAACGTGGGCGTGGTTCGCACGCTGATCACCAGCCTCAAGAACCAGGGCATCCGGATCAGCCTCGACGACTTCGGCA
CGGGCTATTCCAGCCTTGCCCAGCTTCGCACCCTGCCCTTCGACCAGATCAAGATCGACCGCTTCTTCGTGTCGAACCTG
GGCAAGAACAAGGACAGCGCCACGATCGTCGAGGCGATCTCCTCGCTGGGCAAGGGCATGGACCTGCCGATCACTGCCGA
GGGCATCGAGTCCCCCGAAGTGCTCGACGAATTGCGCAAGTTCGGCAAGTTCAAGGGCCAGGGTTTTCTCTACGGCCAGC
CGGGCGATGCCAGCGAGATCCGCGCGATGCTGGCGGACCGCCAACTCCTTCAGCAGCAGGCGGAAAATCAGTCCGGCATC
CCGGCCCGTACCGCAATCGCCTGA

Upstream 100 bases:

>100_bases
AAATCAAGTGCCCCGGCACGCCGCCCCGGCATCGTGACCGGAGGCCGAAATCCTGCGGCTCGAGGCGCGGTCTTAACCAA
ACCTTTAGGACGTTCCCCTA

Downstream 100 bases:

>100_bases
GAGCTGCTGTGAAAGCTGCGGTTTGAGCCGCCGACCGATTGCCATGCCGCCTGCGAATGCCTAAGTCGCGCGGCATGCGC
ATTCCCTTCCGCAAGATGCA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MVVPGGTGRVAGTGASEGRGMATAPDRLDEAGRAEDQAHNDLLGLGIIIAAVLLFVANGSTVLADFVHSLMTGSRPREPM
LGTALILNIALLLFGWRRYVDLTREVGQRREAEETAHKLAHTDPLTGCLNRRSMGPAVEQMVSTARTSGHEVVVMMMDLD
NFKRSNDVHGHQAGDAVLLHTADRIRAILPAGSIIARLGGDEFACAAIFDPDHVESIDRLILRMNEAVAMPVRVDGLMLE
VTASIGLAATSAADAGAPPALADTLLHRADLAMYQAKKAGRNRYCWFEQNMESELRFRSELEREIREGVARGEFVPYYEK
QIDLETGELTGFEMLARWRSPRHGLLSPEIFIPIAEEIGLISELSENLIRQALRDARDWDPTLTLSVNISPIQLRDPWFA
QKLLKLLVEANFPPHRLDIEITETCLHENVGVVRTLITSLKNQGIRISLDDFGTGYSSLAQLRTLPFDQIKIDRFFVSNL
GKNKDSATIVEAISSLGKGMDLPITAEGIESPEVLDELRKFGKFKGQGFLYGQPGDASEIRAMLADRQLLQQQAENQSGI
PARTAIA

Sequences:

>Translated_567_residues
MVVPGGTGRVAGTGASEGRGMATAPDRLDEAGRAEDQAHNDLLGLGIIIAAVLLFVANGSTVLADFVHSLMTGSRPREPM
LGTALILNIALLLFGWRRYVDLTREVGQRREAEETAHKLAHTDPLTGCLNRRSMGPAVEQMVSTARTSGHEVVVMMMDLD
NFKRSNDVHGHQAGDAVLLHTADRIRAILPAGSIIARLGGDEFACAAIFDPDHVESIDRLILRMNEAVAMPVRVDGLMLE
VTASIGLAATSAADAGAPPALADTLLHRADLAMYQAKKAGRNRYCWFEQNMESELRFRSELEREIREGVARGEFVPYYEK
QIDLETGELTGFEMLARWRSPRHGLLSPEIFIPIAEEIGLISELSENLIRQALRDARDWDPTLTLSVNISPIQLRDPWFA
QKLLKLLVEANFPPHRLDIEITETCLHENVGVVRTLITSLKNQGIRISLDDFGTGYSSLAQLRTLPFDQIKIDRFFVSNL
GKNKDSATIVEAISSLGKGMDLPITAEGIESPEVLDELRKFGKFKGQGFLYGQPGDASEIRAMLADRQLLQQQAENQSGI
PARTAIA
>Mature_567_residues
MVVPGGTGRVAGTGASEGRGMATAPDRLDEAGRAEDQAHNDLLGLGIIIAAVLLFVANGSTVLADFVHSLMTGSRPREPM
LGTALILNIALLLFGWRRYVDLTREVGQRREAEETAHKLAHTDPLTGCLNRRSMGPAVEQMVSTARTSGHEVVVMMMDLD
NFKRSNDVHGHQAGDAVLLHTADRIRAILPAGSIIARLGGDEFACAAIFDPDHVESIDRLILRMNEAVAMPVRVDGLMLE
VTASIGLAATSAADAGAPPALADTLLHRADLAMYQAKKAGRNRYCWFEQNMESELRFRSELEREIREGVARGEFVPYYEK
QIDLETGELTGFEMLARWRSPRHGLLSPEIFIPIAEEIGLISELSENLIRQALRDARDWDPTLTLSVNISPIQLRDPWFA
QKLLKLLVEANFPPHRLDIEITETCLHENVGVVRTLITSLKNQGIRISLDDFGTGYSSLAQLRTLPFDQIKIDRFFVSNL
GKNKDSATIVEAISSLGKGMDLPITAEGIESPEVLDELRKFGKFKGQGFLYGQPGDASEIRAMLADRQLLQQQAENQSGI
PARTAIA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=435, Percent_Identity=34.0229885057471, Blast_Score=238, Evalue=8e-64,
Organism=Escherichia coli, GI87081921, Length=451, Percent_Identity=30.1552106430155, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI226510982, Length=447, Percent_Identity=26.8456375838926, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=35.4166666666667, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=31.640625, Blast_Score=135, Evalue=8e-33,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=33.75, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1788502, Length=238, Percent_Identity=32.7731092436975, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=29.3617021276596, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=31.9502074688797, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1786507, Length=226, Percent_Identity=33.6283185840708, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1788849, Length=205, Percent_Identity=30.7317073170732, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081977, Length=181, Percent_Identity=33.1491712707182, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=31.404958677686, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786584, Length=248, Percent_Identity=29.8387096774194, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87082007, Length=225, Percent_Identity=32.4444444444444, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87081881, Length=220, Percent_Identity=29.0909090909091, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787262, Length=224, Percent_Identity=30.8035714285714, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788381, Length=470, Percent_Identity=23.6170212765957, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787802, Length=167, Percent_Identity=31.7365269461078, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=29.4797687861272, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=32.9113924050633, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787816, Length=174, Percent_Identity=29.3103448275862, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789650, Length=450, Percent_Identity=20.4444444444444, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI87081974, Length=128, Percent_Identity=32.03125, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 62213; Mature: 62213

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVPGGTGRVAGTGASEGRGMATAPDRLDEAGRAEDQAHNDLLGLGIIIAAVLLFVANGS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
TVLADFVHSLMTGSRPREPMLGTALILNIALLLFGWRRYVDLTREVGQRREAEETAHKLA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HTDPLTGCLNRRSMGPAVEQMVSTARTSGHEVVVMMMDLDNFKRSNDVHGHQAGDAVLLH
CCCHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEE
TADRIRAILPAGSIIARLGGDEFACAAIFDPDHVESIDRLILRMNEAVAMPVRVDGLMLE
CHHHHHHHHCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHEECCEEECCEEEE
VTASIGLAATSAADAGAPPALADTLLHRADLAMYQAKKAGRNRYCWFEQNMESELRFRSE
EEHHHCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH
LEREIREGVARGEFVPYYEKQIDLETGELTGFEMLARWRSPRHGLLSPEIFIPIAEEIGL
HHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECHHHHHH
ISELSENLIRQALRDARDWDPTLTLSVNISPIQLRDPWFAQKLLKLLVEANFPPHRLDIE
HHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHHCCCCCCEEEEE
ITETCLHENVGVVRTLITSLKNQGIRISLDDFGTGYSSLAQLRTLPFDQIKIDRFFVSNL
HHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
GKNKDSATIVEAISSLGKGMDLPITAEGIESPEVLDELRKFGKFKGQGFLYGQPGDASEI
CCCCCHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHH
RAMLADRQLLQQQAENQSGIPARTAIA
HHHHHHHHHHHHHHCCCCCCCCHHCCC
>Mature Secondary Structure
MVVPGGTGRVAGTGASEGRGMATAPDRLDEAGRAEDQAHNDLLGLGIIIAAVLLFVANGS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
TVLADFVHSLMTGSRPREPMLGTALILNIALLLFGWRRYVDLTREVGQRREAEETAHKLA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HTDPLTGCLNRRSMGPAVEQMVSTARTSGHEVVVMMMDLDNFKRSNDVHGHQAGDAVLLH
CCCHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEE
TADRIRAILPAGSIIARLGGDEFACAAIFDPDHVESIDRLILRMNEAVAMPVRVDGLMLE
CHHHHHHHHCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHEECCEEECCEEEE
VTASIGLAATSAADAGAPPALADTLLHRADLAMYQAKKAGRNRYCWFEQNMESELRFRSE
EEHHHCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH
LEREIREGVARGEFVPYYEKQIDLETGELTGFEMLARWRSPRHGLLSPEIFIPIAEEIGL
HHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECHHHHHH
ISELSENLIRQALRDARDWDPTLTLSVNISPIQLRDPWFAQKLLKLLVEANFPPHRLDIE
HHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHHCCCCCCEEEEE
ITETCLHENVGVVRTLITSLKNQGIRISLDDFGTGYSSLAQLRTLPFDQIKIDRFFVSNL
HHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
GKNKDSATIVEAISSLGKGMDLPITAEGIESPEVLDELRKFGKFKGQGFLYGQPGDASEI
CCCCCHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHH
RAMLADRQLLQQQAENQSGIPARTAIA
HHHHHHHHHHHHHHCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]