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The map label for this gene is omp85 [H]

Identifier: 87199398

GI number: 87199398

Start: 1423743

End: 1426460

Strand: Direct

Name: omp85 [H]

Synonym: Saro_1377

Alternate gene names: 87199398

Gene position: 1423743-1426460 (Clockwise)

Preceding gene: 87199397

Following gene: 87199399

Centisome position: 39.97

GC content: 63.39

Gene sequence:

>2718_bases
ATGATCGGACGTAACGCGGTACGTAACTTGCAGGCTCCGGGCCTGGGCGCGTTCCTGCTGGCGACAACCGCGTTGGCCGT
GGTTCCTTCCCTGGCGATGGCCCAGGCAGGCGGTCCTCCGCCGCGTGGCGCACCGCCGCCGGGCGGCATGCGGGGCGAGC
CGCCCGTGGCTCCGCCCGAAGCGCGCGCTGTCGAGCCGGGTCCTGCCGCACCCGAAGGCACTCCCGCCGAGCAGATCATC
AAGTCGGTCACCGTGCAGGGATCGCAGCGTCTCGAGCCGGATACCATCCTGTCCTATATCCGTCTGCGTCCGGGCCAGGC
CTATTCTCAGGCTGCCGCCGACCAGGCGCTGAAGGATCTCTACGCGACCGAGCTTTTCGCCGACGTCTCGATCCGCAACA
ACAGCGGCGACGTTGTCGTGCAGGTCAAGGAAAACCCGGTCATCAACCGCATCATCCTTGAAGGCAACAAGCGCCTCAAG
GAAGACAAGATCCTGCCCGAGATCAAGCTCGCGGCGCGCCAGATCTTCACGCGTTCGAAGGTCCGCGCAGACGTTGCGCG
CATCATCGAGTTGTACAAGCGCCAGGGGCGCTTCGCCGCGACGGTCGAGCCCAAGATGGTCATGCTCGACCAGAATCGCG
TCGACATCGTGTTCGAGATCAGCGAGGGGCCGAAGTCCAAGGTTCGCCAGATCAACATCATCGGCAACGAGAAGTTCTCC
GACAGCGAGCTTCGCGGCGAGATGGTGACCAAGCAGGCGCGCTTCTTCCGGCTGTTCTCCAGCGGTACCAGCTACGACCC
GGACCGCCTCGCTTTCGACCAGCAGAAGCTGCGTCAGTTCTACCTGACCGAAGGCTATGCCGATTTTCGTGTCGTCTCGG
CCGTGGCCGAACTCACGCCCGACAAGCGCGACTTCATCATCACCTATGTGGTCGAGGAAGGCGAACGCTACAAATTCGGC
GACGTGAAGGTCGACAGCCAGATTCGCGACTTCGACAGCGAAGCGCTGGCCAAGCGCCTGCCGATGAAGGCGGGCGACTG
GTACAACGCAAAGATGGTCGAGGACCAGGTCGACGCACTCACCGAGACGGCGGGCGCGTTCGGCTATGCCTTTGCCGACG
TGCGGCCCGACTTCTCGCGCAACAAGGACGACCTGACGATGTCGGTCAACTTCCGCATCGCGGAAGCGCCACGCGTCTAT
GTCGAGCGTGTCGACGTCAACGGCAACACGCTGACCCAGGACAAGGTCGTCCGCCGCGAGTTCCGTCTGGCCGAAGGCGA
TGCCTTCAACACCTTCCAGATCAAGCGCTCGACCAACCGCATCAAGTCGCTCGGCTACTTCCAGGAGAAGTTCGAGATCG
AGCAGAAGCCGGGCAGCGCTCCGGACCGCATCATCCTCGAAGCCAACGTTGAGGAACGGCCCACCGGCGAACTCCAGCTT
TCGGCCGGCTTCTCGAGCCTCGAGAGCTTCATCTTCCAGGGCTCTATCCGCCAGAACAACTTCCGCGGTCGTGGCCAGAC
GATCGGCCTGTCGGTCGACTATTCGCGTTATACGCGTTCGGTCCAGGTAAGCTTCACCGAGCCCTACCTGTTCGACAAGA
ACATCTCGCTGGGCGTCGACGTCTACCGCCGCGACCTCAACAGCTTCAACTACTTCAACTCCGACCGCAACACGACCTAC
AAGCAGGCGACGACCGGCTTCCAGATCCGCGCCGGCGTGCCGCTGACCGAATACATGTCGCTGATCGGTCGCTACACCTT
CAACCTCGACGACGTGACGCTGTCGAAGAGCCAGTTCTACGCCGACCTCAACGGCGACGGCGTGCAGACCTGCGAACCGC
TCCTGGCCGGTCGATACCTGTGCGATGCCATCGGCAAGCGCACCAGCTCGATCATTGGCGCCTCGGTGGTCTACGATACG
CTGGATAACCGCCTGCGCCCGAGCAGGGGCTCGCAGTTCGTGATCGGCGGCGACATTGCCGGACTCGGCGGTTCGGTGAA
GTACGCACGCCTCACCGCGAACGCGGCCCGGTTCTTCCCGCTCGGCAGCGGCTTCATCTTCTCGGTTCGCGGCGAGGGCG
GGATCATCAAGGCGCTGGGCAGCCGTTCGGATGATCCAAGCATCGACGACGTGCGCCTGACCGACCGCTTCTTCCTTGGC
GAGCCGCAGATCCGCGGCTTCGACATCCGCGGCGTCGGGCCGCGCGTGCTCCGCAAGTATCTCGTCGATACCAACGGTGA
CGGGACGGTGGACACGCCTTCGACCGACCGCAACCAGTGGGTCGATGACGCGCTGGGCGGCAAGTACTACTACCTGAGCC
GTGCAGAACTGGAGATTCCGCTGGGTTCCGGCGCGCGCGAACTTGGCCTGCGTCCATCGATCTACCTCGACGCCGGTGCA
GTCTGGGGCGTCAATCGTCCGCAGACCCAGAACGTGAACTCGGCGGTTACGCTCTACCGTCAGACCTACCAGGGGACGAC
GACGATCGTCACCAGCCCAACGGCACCCGACAACACGGCCAACACCGTCTACACGGCCATTCCGGCCTATGTGGAGGAAT
ACGTGGGTGACACGCCATCGCCGCGTGTTTCCGTCGGTATCGGCGTCAACTGGAACTCGCCATTCGGCCCGTTCCGTCTC
GACTTCGCCAAGGTCCTCAAGAAGGCCAACGGCGACGACCCCAAGACTTTCACCTTCAACGTGGGAACCCAGTTCTGA

Upstream 100 bases:

>100_bases
ATTGGCCTTGTACCATCGGGCACATGGCAGCACTGCTTGCCGCGGTCGGACACTCCTCGGGGGCGTCCAGCCGCCACTAT
ATACGGGATGGCGCTTGGTG

Downstream 100 bases:

>100_bases
TGAAGACCCGTATCGCTTCCGCGCTTCTCGCGGGTATTGCCGTTGCTGTCGCCACCCCGGCTCTTGCCGCCAAGGATGCA
CCCGCAGGTCCGGCCGTTGC

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 905; Mature: 905

Protein sequence:

>905_residues
MIGRNAVRNLQAPGLGAFLLATTALAVVPSLAMAQAGGPPPRGAPPPGGMRGEPPVAPPEARAVEPGPAAPEGTPAEQII
KSVTVQGSQRLEPDTILSYIRLRPGQAYSQAAADQALKDLYATELFADVSIRNNSGDVVVQVKENPVINRIILEGNKRLK
EDKILPEIKLAARQIFTRSKVRADVARIIELYKRQGRFAATVEPKMVMLDQNRVDIVFEISEGPKSKVRQINIIGNEKFS
DSELRGEMVTKQARFFRLFSSGTSYDPDRLAFDQQKLRQFYLTEGYADFRVVSAVAELTPDKRDFIITYVVEEGERYKFG
DVKVDSQIRDFDSEALAKRLPMKAGDWYNAKMVEDQVDALTETAGAFGYAFADVRPDFSRNKDDLTMSVNFRIAEAPRVY
VERVDVNGNTLTQDKVVRREFRLAEGDAFNTFQIKRSTNRIKSLGYFQEKFEIEQKPGSAPDRIILEANVEERPTGELQL
SAGFSSLESFIFQGSIRQNNFRGRGQTIGLSVDYSRYTRSVQVSFTEPYLFDKNISLGVDVYRRDLNSFNYFNSDRNTTY
KQATTGFQIRAGVPLTEYMSLIGRYTFNLDDVTLSKSQFYADLNGDGVQTCEPLLAGRYLCDAIGKRTSSIIGASVVYDT
LDNRLRPSRGSQFVIGGDIAGLGGSVKYARLTANAARFFPLGSGFIFSVRGEGGIIKALGSRSDDPSIDDVRLTDRFFLG
EPQIRGFDIRGVGPRVLRKYLVDTNGDGTVDTPSTDRNQWVDDALGGKYYYLSRAELEIPLGSGARELGLRPSIYLDAGA
VWGVNRPQTQNVNSAVTLYRQTYQGTTTIVTSPTAPDNTANTVYTAIPAYVEEYVGDTPSPRVSVGIGVNWNSPFGPFRL
DFAKVLKKANGDDPKTFTFNVGTQF

Sequences:

>Translated_905_residues
MIGRNAVRNLQAPGLGAFLLATTALAVVPSLAMAQAGGPPPRGAPPPGGMRGEPPVAPPEARAVEPGPAAPEGTPAEQII
KSVTVQGSQRLEPDTILSYIRLRPGQAYSQAAADQALKDLYATELFADVSIRNNSGDVVVQVKENPVINRIILEGNKRLK
EDKILPEIKLAARQIFTRSKVRADVARIIELYKRQGRFAATVEPKMVMLDQNRVDIVFEISEGPKSKVRQINIIGNEKFS
DSELRGEMVTKQARFFRLFSSGTSYDPDRLAFDQQKLRQFYLTEGYADFRVVSAVAELTPDKRDFIITYVVEEGERYKFG
DVKVDSQIRDFDSEALAKRLPMKAGDWYNAKMVEDQVDALTETAGAFGYAFADVRPDFSRNKDDLTMSVNFRIAEAPRVY
VERVDVNGNTLTQDKVVRREFRLAEGDAFNTFQIKRSTNRIKSLGYFQEKFEIEQKPGSAPDRIILEANVEERPTGELQL
SAGFSSLESFIFQGSIRQNNFRGRGQTIGLSVDYSRYTRSVQVSFTEPYLFDKNISLGVDVYRRDLNSFNYFNSDRNTTY
KQATTGFQIRAGVPLTEYMSLIGRYTFNLDDVTLSKSQFYADLNGDGVQTCEPLLAGRYLCDAIGKRTSSIIGASVVYDT
LDNRLRPSRGSQFVIGGDIAGLGGSVKYARLTANAARFFPLGSGFIFSVRGEGGIIKALGSRSDDPSIDDVRLTDRFFLG
EPQIRGFDIRGVGPRVLRKYLVDTNGDGTVDTPSTDRNQWVDDALGGKYYYLSRAELEIPLGSGARELGLRPSIYLDAGA
VWGVNRPQTQNVNSAVTLYRQTYQGTTTIVTSPTAPDNTANTVYTAIPAYVEEYVGDTPSPRVSVGIGVNWNSPFGPFRL
DFAKVLKKANGDDPKTFTFNVGTQF
>Mature_905_residues
MIGRNAVRNLQAPGLGAFLLATTALAVVPSLAMAQAGGPPPRGAPPPGGMRGEPPVAPPEARAVEPGPAAPEGTPAEQII
KSVTVQGSQRLEPDTILSYIRLRPGQAYSQAAADQALKDLYATELFADVSIRNNSGDVVVQVKENPVINRIILEGNKRLK
EDKILPEIKLAARQIFTRSKVRADVARIIELYKRQGRFAATVEPKMVMLDQNRVDIVFEISEGPKSKVRQINIIGNEKFS
DSELRGEMVTKQARFFRLFSSGTSYDPDRLAFDQQKLRQFYLTEGYADFRVVSAVAELTPDKRDFIITYVVEEGERYKFG
DVKVDSQIRDFDSEALAKRLPMKAGDWYNAKMVEDQVDALTETAGAFGYAFADVRPDFSRNKDDLTMSVNFRIAEAPRVY
VERVDVNGNTLTQDKVVRREFRLAEGDAFNTFQIKRSTNRIKSLGYFQEKFEIEQKPGSAPDRIILEANVEERPTGELQL
SAGFSSLESFIFQGSIRQNNFRGRGQTIGLSVDYSRYTRSVQVSFTEPYLFDKNISLGVDVYRRDLNSFNYFNSDRNTTY
KQATTGFQIRAGVPLTEYMSLIGRYTFNLDDVTLSKSQFYADLNGDGVQTCEPLLAGRYLCDAIGKRTSSIIGASVVYDT
LDNRLRPSRGSQFVIGGDIAGLGGSVKYARLTANAARFFPLGSGFIFSVRGEGGIIKALGSRSDDPSIDDVRLTDRFFLG
EPQIRGFDIRGVGPRVLRKYLVDTNGDGTVDTPSTDRNQWVDDALGGKYYYLSRAELEIPLGSGARELGLRPSIYLDAGA
VWGVNRPQTQNVNSAVTLYRQTYQGTTTIVTSPTAPDNTANTVYTAIPAYVEEYVGDTPSPRVSVGIGVNWNSPFGPFRL
DFAKVLKKANGDDPKTFTFNVGTQF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=857, Percent_Identity=25.5542590431739, Blast_Score=268, Evalue=1e-72,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 100182; Mature: 100182

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGRNAVRNLQAPGLGAFLLATTALAVVPSLAMAQAGGPPPRGAPPPGGMRGEPPVAPPE
CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
ARAVEPGPAAPEGTPAEQIIKSVTVQGSQRLEPDTILSYIRLRPGQAYSQAAADQALKDL
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
YATELFADVSIRNNSGDVVVQVKENPVINRIILEGNKRLKEDKILPEIKLAARQIFTRSK
HHHHHHEEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHH
VRADVARIIELYKRQGRFAATVEPKMVMLDQNRVDIVFEISEGPKSKVRQINIIGNEKFS
HHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEEEEEEECCCCCCCCEEEEEECCCCCC
DSELRGEMVTKQARFFRLFSSGTSYDPDRLAFDQQKLRQFYLTEGYADFRVVSAVAELTP
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
DKRDFIITYVVEEGERYKFGDVKVDSQIRDFDSEALAKRLPMKAGDWYNAKMVEDQVDAL
CCCCEEEEEEEECCCEEEECCEEECCHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHH
TETAGAFGYAFADVRPDFSRNKDDLTMSVNFRIAEAPRVYVERVDVNGNTLTQDKVVRRE
HHHHCHHEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCEECHHHHHHHH
FRLAEGDAFNTFQIKRSTNRIKSLGYFQEKFEIEQKPGSAPDRIILEANVEERPTGELQL
HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEE
SAGFSSLESFIFQGSIRQNNFRGRGQTIGLSVDYSRYTRSVQVSFTEPYLFDKNISLGVD
ECCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHCEEEEEEECCCEEECCCCCCCHH
VYRRDLNSFNYFNSDRNTTYKQATTGFQIRAGVPLTEYMSLIGRYTFNLDDVTLSKSQFY
HHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCHHHHHHHHHHEEECCCCEEECCCCEE
ADLNGDGVQTCEPLLAGRYLCDAIGKRTSSIIGASVVYDTLDNRLRPSRGSQFVIGGDIA
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEE
GLGGSVKYARLTANAARFFPLGSGFIFSVRGEGGIIKALGSRSDDPSIDDVRLTDRFFLG
CCCCCEEEEEEECCCCEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCEEEECEEEEC
EPQIRGFDIRGVGPRVLRKYLVDTNGDGTVDTPSTDRNQWVDDALGGKYYYLSRAELEIP
CCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEEEE
LGSGARELGLRPSIYLDAGAVWGVNRPQTQNVNSAVTLYRQTYQGTTTIVTSPTAPDNTA
CCCCHHHHCCCCEEEEECCEEECCCCCCCCCCCHHHHEEHHHCCCCEEEEECCCCCCCCC
NTVYTAIPAYVEEYVGDTPSPRVSVGIGVNWNSPFGPFRLDFAKVLKKANGDDPKTFTFN
CCEEHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
VGTQF
CCCCC
>Mature Secondary Structure
MIGRNAVRNLQAPGLGAFLLATTALAVVPSLAMAQAGGPPPRGAPPPGGMRGEPPVAPPE
CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
ARAVEPGPAAPEGTPAEQIIKSVTVQGSQRLEPDTILSYIRLRPGQAYSQAAADQALKDL
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
YATELFADVSIRNNSGDVVVQVKENPVINRIILEGNKRLKEDKILPEIKLAARQIFTRSK
HHHHHHEEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHH
VRADVARIIELYKRQGRFAATVEPKMVMLDQNRVDIVFEISEGPKSKVRQINIIGNEKFS
HHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEEEEEEECCCCCCCCEEEEEECCCCCC
DSELRGEMVTKQARFFRLFSSGTSYDPDRLAFDQQKLRQFYLTEGYADFRVVSAVAELTP
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
DKRDFIITYVVEEGERYKFGDVKVDSQIRDFDSEALAKRLPMKAGDWYNAKMVEDQVDAL
CCCCEEEEEEEECCCEEEECCEEECCHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHH
TETAGAFGYAFADVRPDFSRNKDDLTMSVNFRIAEAPRVYVERVDVNGNTLTQDKVVRRE
HHHHCHHEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCEECHHHHHHHH
FRLAEGDAFNTFQIKRSTNRIKSLGYFQEKFEIEQKPGSAPDRIILEANVEERPTGELQL
HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEE
SAGFSSLESFIFQGSIRQNNFRGRGQTIGLSVDYSRYTRSVQVSFTEPYLFDKNISLGVD
ECCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHCEEEEEEECCCEEECCCCCCCHH
VYRRDLNSFNYFNSDRNTTYKQATTGFQIRAGVPLTEYMSLIGRYTFNLDDVTLSKSQFY
HHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCHHHHHHHHHHEEECCCCEEECCCCEE
ADLNGDGVQTCEPLLAGRYLCDAIGKRTSSIIGASVVYDTLDNRLRPSRGSQFVIGGDIA
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEE
GLGGSVKYARLTANAARFFPLGSGFIFSVRGEGGIIKALGSRSDDPSIDDVRLTDRFFLG
CCCCCEEEEEEECCCCEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCEEEECEEEEC
EPQIRGFDIRGVGPRVLRKYLVDTNGDGTVDTPSTDRNQWVDDALGGKYYYLSRAELEIP
CCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEEEE
LGSGARELGLRPSIYLDAGAVWGVNRPQTQNVNSAVTLYRQTYQGTTTIVTSPTAPDNTA
CCCCHHHHCCCCEEEEECCEEECCCCCCCCCCCHHHHEEHHHCCCCEEEEECCCCCCCCC
NTVYTAIPAYVEEYVGDTPSPRVSVGIGVNWNSPFGPFRLDFAKVLKKANGDDPKTFTFN
CCEEHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
VGTQF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]