| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199310
Identifier: 87199310
GI number: 87199310
Start: 1331879
End: 1332658
Strand: Reverse
Name: 87199310
Synonym: Saro_1289
Alternate gene names: NA
Gene position: 1332658-1331879 (Counterclockwise)
Preceding gene: 87199311
Following gene: 87199308
Centisome position: 37.42
GC content: 63.72
Gene sequence:
>780_bases ATGGCCAGCGCGCCGCAAGCCAACCTGCCGATGTTCTACAACGACCTTATGCCGCTCAACAGCCGCGACCACGCCGCGTG GAAGGCGAAGAATGCGGATGCGGCCCCCTGGCTCATCGGCCAGCACGCCATCCCCTTGACGGCAGAGGAATTTCCGCAGG CCGCGCGCCACTACCCGATCATTTTCGCATCGGGCGACAACCCCGTTCCGCTGGCCCTGATGGGCCTTAACGAAGGCGTG AACGTGTTCGTCGACGAGGACGGCAAGGTCACGCAGCCGGTCTACATCCCGGCCTATGTCCGCCGCTATCCGTTCCTCCT CGCCAAGCTCAACCCGAACAGCGAAGAGCTGTCGCTGTGCTTCGATCCCTCGTCCGGCCTGATCGGCGATTCGGTCGACG GCGTGGAGCTTTTCTCCGACGGCCAGCCTTCGGAAGCGACCAAGGCCGCGCTCGGCTTCTGCGAACAGTTCGAACAGGCC GGCCAGCGTACGCAGGCCTTCATCGACGAACTGAAGAAGCATGACCTCCTGATGGAAGGCGAAGTCGCCATCCAGCAGCA GGGCAACGAACAGCCGTTCATCTATCGCGGTTTCCAGATGGTCAACCAGGACAAGCTGCGCGAAACCCGTGGCGACGTGC TGCGCGGCTGGGCGCAAAGCGGGCTCCTGCCGCTGCTTTATGCTCACCTGTTCTCGCTCGAACTGATCAGCCAGATCTTC GGCGCGCAGGTCCAGATGGGCAAGGGCCCGATCCCGGCGACCCCGGTTCCGGCCGAGTAA
Upstream 100 bases:
>100_bases GACGCGGCTTGCGCGGCGGTTTCCCAGTCCCTAAGAACCGCGGTTCCCGCAAGAACCGCGGTCAGCCGCGCGTTACCTGT TGATCTTGGAGAGATGCACA
Downstream 100 bases:
>100_bases ACGGCCGCCCTGCAATCGGGCAACAGGTCAACAAAAAAGGCGACGGGCACTCAGCTTGTCGCCTTTTTTGTTTCCGGTGT TGCAAATTTCACGCAAACCC
Product: SapC
Products: NA
Alternate protein names: SapC-Related Protein; SapC Superfamily; SapC-Like Protein; SapC Protein; SapC Superfamily Protein; Sapc Family Protein
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MASAPQANLPMFYNDLMPLNSRDHAAWKAKNADAAPWLIGQHAIPLTAEEFPQAARHYPIIFASGDNPVPLALMGLNEGV NVFVDEDGKVTQPVYIPAYVRRYPFLLAKLNPNSEELSLCFDPSSGLIGDSVDGVELFSDGQPSEATKAALGFCEQFEQA GQRTQAFIDELKKHDLLMEGEVAIQQQGNEQPFIYRGFQMVNQDKLRETRGDVLRGWAQSGLLPLLYAHLFSLELISQIF GAQVQMGKGPIPATPVPAE
Sequences:
>Translated_259_residues MASAPQANLPMFYNDLMPLNSRDHAAWKAKNADAAPWLIGQHAIPLTAEEFPQAARHYPIIFASGDNPVPLALMGLNEGV NVFVDEDGKVTQPVYIPAYVRRYPFLLAKLNPNSEELSLCFDPSSGLIGDSVDGVELFSDGQPSEATKAALGFCEQFEQA GQRTQAFIDELKKHDLLMEGEVAIQQQGNEQPFIYRGFQMVNQDKLRETRGDVLRGWAQSGLLPLLYAHLFSLELISQIF GAQVQMGKGPIPATPVPAE >Mature_258_residues ASAPQANLPMFYNDLMPLNSRDHAAWKAKNADAAPWLIGQHAIPLTAEEFPQAARHYPIIFASGDNPVPLALMGLNEGVN VFVDEDGKVTQPVYIPAYVRRYPFLLAKLNPNSEELSLCFDPSSGLIGDSVDGVELFSDGQPSEATKAALGFCEQFEQAG QRTQAFIDELKKHDLLMEGEVAIQQQGNEQPFIYRGFQMVNQDKLRETRGDVLRGWAQSGLLPLLYAHLFSLELISQIFG AQVQMGKGPIPATPVPAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28469; Mature: 28337
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASAPQANLPMFYNDLMPLNSRDHAAWKAKNADAAPWLIGQHAIPLTAEEFPQAARHYPI CCCCCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCE IFASGDNPVPLALMGLNEGVNVFVDEDGKVTQPVYIPAYVRRYPFLLAKLNPNSEELSLC EEECCCCCCEEEEEECCCCCEEEECCCCCEECCEECHHHHHHCCEEEEEECCCCCEEEEE FDPSSGLIGDSVDGVELFSDGQPSEATKAALGFCEQFEQAGQRTQAFIDELKKHDLLMEG ECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC EVAIQQQGNEQPFIYRGFQMVNQDKLRETRGDVLRGWAQSGLLPLLYAHLFSLELISQIF CCCEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH GAQVQMGKGPIPATPVPAE CCEEECCCCCCCCCCCCCC >Mature Secondary Structure ASAPQANLPMFYNDLMPLNSRDHAAWKAKNADAAPWLIGQHAIPLTAEEFPQAARHYPI CCCCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCE IFASGDNPVPLALMGLNEGVNVFVDEDGKVTQPVYIPAYVRRYPFLLAKLNPNSEELSLC EEECCCCCCEEEEEECCCCCEEEECCCCCEECCEECHHHHHHCCEEEEEECCCCCEEEEE FDPSSGLIGDSVDGVELFSDGQPSEATKAALGFCEQFEQAGQRTQAFIDELKKHDLLMEG ECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC EVAIQQQGNEQPFIYRGFQMVNQDKLRETRGDVLRGWAQSGLLPLLYAHLFSLELISQIF CCCEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH GAQVQMGKGPIPATPVPAE CCEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA