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The map label for this gene is lipA [H]

Identifier: 87199307

GI number: 87199307

Start: 1328422

End: 1329735

Strand: Reverse

Name: lipA [H]

Synonym: Saro_1286

Alternate gene names: 87199307

Gene position: 1329735-1328422 (Counterclockwise)

Preceding gene: 87199308

Following gene: 87199306

Centisome position: 37.34

GC content: 69.86

Gene sequence:

>1314_bases
ATGCCTTCTCCATCACCAAGGCCATTGCTGGAAGTTCCCCGGTTCCCGGGCAGCAGCCCTGCATGCCTCCAGCAGCCCAG
AGCCGGAGCAAGGCTGGACATCGACGCGGCCGAACTGCGCCGCATGTGTGATCGTCTCGGCCTGAGCGGCTCCGCATATC
CTGAGGAGGATCTGCGCCGCCGCTTTCTCGAAGGATGGGCACTCGTCGATCCCTTCGGCGGGCCGCCGCCCTCGCCCCGG
ACCGCCATCGAACTGTTCGCGTCATGGCGCAGGCTTTTCAGCGCCAACCGGCAGATCGCCAGTATCCAGGGAATCGCGAG
GTGGAAGCGCGCGGCGCTGGCCCCGCTTCTCTGGGACGGAAGACGCGACGTTCCATTCGATCAGCCGCTGGCGCCCGGAG
GAACGACCGCGATATGGCGCGCCCGCACGTCAACAAGGGCCCTGCGGGCAATCGACGCCAGCGGCGGGCAGCGGCTGGAG
ATCGAGGACGGCTTCATCCGCTCGGCCGGCCTTGGCGCGGATTGCGTGCCGCCGCTGTCCATCGTCGTCGAGCGGGACTT
CGCGCACTATGACCCGTCGGGGCCGAGCGGGGTCGAGCGGCTGGTTGCGAAGGGCGGCTTCGATGGCGACCTGCTGGCGC
GCGCCGCCCGGCTGCGGACGCGAATCGTTTCGCTGGGCATCGGCAAGTACGGCGCATCGAGCATGCGCTTCGCTCGGCCA
GGCGGGGCGCGGCGGCACCTGCTGGTCATCGGACAGGTGGCCGACGATCTCTCGCTGCGCCTTGGCGGGGCCGGGCTGGA
CAACATGGCGCTACTGCGCCGCGTCCGGCTTGCGGCGCCGGATGCGTTCATTCTCTACCGCCCGCACCCGGACGTCACCG
CCGGTCACCGCGCCGGGCATGTTCCCGACGGAGAGGCGCTGGCCTTTGCCGACATGGTCGCGCGGGAGCCACCAATCGCG
GCGCTGATCGAAGCGGCCGACGAAGTCCATGCCATCACGTCGCTTGCGGGATTCGAGGCATTGCTGCGGGGCAAGCGCGT
GGTGACCCATGGCGTGCCGTTCTACGCAGGCTGGGGGCTGACCACGGATCTCGGGCCCGTCCCTGCGCGCAGGATGGCAC
GACGCAGCATCGATGAGCTGGTTGCGGCCGCGCTGCTGCTGCATCCGCGTTACCTCGACCCGCTGACCCGGCTTCCCTGC
CCGGTGGAAGTTGCGGTGGAGCGCGTTGCCGGAGGGGCCGGGATGGGCAGCGAACTGCTGGTCGGCCTGCGCCGGAGGTG
GGGCTCTGTGCGGCGCGCGGCACGATGGAACTGA

Upstream 100 bases:

>100_bases
CCACCATCGGAAAACCCCGCTTCGGCGGGGTTTTTTCATGTCCGTTATCGAACCGACTTTGATCGAGTCCGGACCGCCGG
CCCGCTAACGGGAAGGCGCC

Downstream 100 bases:

>100_bases
GGCGCTTCCTGTTCCTGCAAGGACCGCCGGGGCCGTTTTTTGCGCTGCTTGCCGAAAGGCTTCGACGCGAGGGATGCGAG
ACGCTTCGGGTCAATCTCAA

Product: capsule polysaccharide biosynthesis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MPSPSPRPLLEVPRFPGSSPACLQQPRAGARLDIDAAELRRMCDRLGLSGSAYPEEDLRRRFLEGWALVDPFGGPPPSPR
TAIELFASWRRLFSANRQIASIQGIARWKRAALAPLLWDGRRDVPFDQPLAPGGTTAIWRARTSTRALRAIDASGGQRLE
IEDGFIRSAGLGADCVPPLSIVVERDFAHYDPSGPSGVERLVAKGGFDGDLLARAARLRTRIVSLGIGKYGASSMRFARP
GGARRHLLVIGQVADDLSLRLGGAGLDNMALLRRVRLAAPDAFILYRPHPDVTAGHRAGHVPDGEALAFADMVAREPPIA
ALIEAADEVHAITSLAGFEALLRGKRVVTHGVPFYAGWGLTTDLGPVPARRMARRSIDELVAAALLLHPRYLDPLTRLPC
PVEVAVERVAGGAGMGSELLVGLRRRWGSVRRAARWN

Sequences:

>Translated_437_residues
MPSPSPRPLLEVPRFPGSSPACLQQPRAGARLDIDAAELRRMCDRLGLSGSAYPEEDLRRRFLEGWALVDPFGGPPPSPR
TAIELFASWRRLFSANRQIASIQGIARWKRAALAPLLWDGRRDVPFDQPLAPGGTTAIWRARTSTRALRAIDASGGQRLE
IEDGFIRSAGLGADCVPPLSIVVERDFAHYDPSGPSGVERLVAKGGFDGDLLARAARLRTRIVSLGIGKYGASSMRFARP
GGARRHLLVIGQVADDLSLRLGGAGLDNMALLRRVRLAAPDAFILYRPHPDVTAGHRAGHVPDGEALAFADMVAREPPIA
ALIEAADEVHAITSLAGFEALLRGKRVVTHGVPFYAGWGLTTDLGPVPARRMARRSIDELVAAALLLHPRYLDPLTRLPC
PVEVAVERVAGGAGMGSELLVGLRRRWGSVRRAARWN
>Mature_436_residues
PSPSPRPLLEVPRFPGSSPACLQQPRAGARLDIDAAELRRMCDRLGLSGSAYPEEDLRRRFLEGWALVDPFGGPPPSPRT
AIELFASWRRLFSANRQIASIQGIARWKRAALAPLLWDGRRDVPFDQPLAPGGTTAIWRARTSTRALRAIDASGGQRLEI
EDGFIRSAGLGADCVPPLSIVVERDFAHYDPSGPSGVERLVAKGGFDGDLLARAARLRTRIVSLGIGKYGASSMRFARPG
GARRHLLVIGQVADDLSLRLGGAGLDNMALLRRVRLAAPDAFILYRPHPDVTAGHRAGHVPDGEALAFADMVAREPPIAA
LIEAADEVHAITSLAGFEALLRGKRVVTHGVPFYAGWGLTTDLGPVPARRMARRSIDELVAAALLLHPRYLDPLTRLPCP
VEVAVERVAGGAGMGSELLVGLRRRWGSVRRAARWN

Specific function: Involved in the phospholipid modification of the capsular polysaccharide, a strong requirement for its translocation to the cell surface [H]

COG id: COG3563

COG function: function code M; Capsule polysaccharide export protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007833 [H]

Pfam domain/function: PF05159 Capsule_synth [H]

EC number: NA

Molecular weight: Translated: 47220; Mature: 47089

Theoretical pI: Translated: 11.07; Mature: 11.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSPSPRPLLEVPRFPGSSPACLQQPRAGARLDIDAAELRRMCDRLGLSGSAYPEEDLRR
CCCCCCCCHHCCCCCCCCCCHHHHCCCCCCEECCCHHHHHHHHHHHCCCCCCCCHHHHHH
RFLEGWALVDPFGGPPPSPRTAIELFASWRRLFSANRQIASIQGIARWKRAALAPLLWDG
HHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
RRDVPFDQPLAPGGTTAIWRARTSTRALRAIDASGGQRLEIEDGFIRSAGLGADCVPPLS
CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCCCHH
IVVERDFAHYDPSGPSGVERLVAKGGFDGDLLARAARLRTRIVSLGIGKYGASSMRFARP
EEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCC
GGARRHLLVIGQVADDLSLRLGGAGLDNMALLRRVRLAAPDAFILYRPHPDVTAGHRAGH
CCCCEEEEEEEECCCCHHEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
VPDGEALAFADMVAREPPIAALIEAADEVHAITSLAGFEALLRGKRVVTHGVPFYAGWGL
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEECCCC
TTDLGPVPARRMARRSIDELVAAALLLHPRYLDPLTRLPCPVEVAVERVAGGAGMGSELL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCHHHHCCCCHHHHHHHHHCCCCCHHHHH
VGLRRRWGSVRRAARWN
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PSPSPRPLLEVPRFPGSSPACLQQPRAGARLDIDAAELRRMCDRLGLSGSAYPEEDLRR
CCCCCCCHHCCCCCCCCCCHHHHCCCCCCEECCCHHHHHHHHHHHCCCCCCCCHHHHHH
RFLEGWALVDPFGGPPPSPRTAIELFASWRRLFSANRQIASIQGIARWKRAALAPLLWDG
HHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
RRDVPFDQPLAPGGTTAIWRARTSTRALRAIDASGGQRLEIEDGFIRSAGLGADCVPPLS
CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCCCHH
IVVERDFAHYDPSGPSGVERLVAKGGFDGDLLARAARLRTRIVSLGIGKYGASSMRFARP
EEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCC
GGARRHLLVIGQVADDLSLRLGGAGLDNMALLRRVRLAAPDAFILYRPHPDVTAGHRAGH
CCCCEEEEEEEECCCCHHEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
VPDGEALAFADMVAREPPIAALIEAADEVHAITSLAGFEALLRGKRVVTHGVPFYAGWGL
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEECCCC
TTDLGPVPARRMARRSIDELVAAALLLHPRYLDPLTRLPCPVEVAVERVAGGAGMGSELL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCHHHHCCCCHHHHHHHHHCCCCCHHHHH
VGLRRRWGSVRRAARWN
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]