| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is actII-2 [H]
Identifier: 87199231
GI number: 87199231
Start: 1256692
End: 1258152
Strand: Direct
Name: actII-2 [H]
Synonym: Saro_1209
Alternate gene names: 87199231
Gene position: 1256692-1258152 (Clockwise)
Preceding gene: 87199230
Following gene: 87199232
Centisome position: 35.28
GC content: 69.06
Gene sequence:
>1461_bases ATGGCAAATGACATCGCCGGCATGACCGAGAGGCAGAAGAGCCTCGCCTTCTTCACGCTCATCACCGCGCTGGTGCTGGA GATCGTGGACGTCACGATCATCAACACCGCGCTGCCGGCCATGCAGGCCGACTTTGCGGCGAGAGGGCAGGACCTTGGGG GCGATACCGCGCAGTGGATCGCGGCGGGCTATTCGCTCGCCTTCGGGTTGCTGCTGATCCTTGGCGGCAGGTTGGGGGAC CTGTTCGGCGGGCGGGCGATGTTCCTGGCGGGCGTGGGCGGATTCACCGTGGCATCGGCGCTTTGCGGCATGGCATCGGA CCCCGGACTGCTGGTCGCTGCGCGTGTTCTCCAGGGGGCGGCAGGCGCGATCATGGCGCCGCAGGTCATGGCGGTGATCC AGATCCTCTACGATCCGGTGGAGCGCATCGGACGCCTGGCCTGGTTCGGGGTGATCGGCGGTCTGGCCGGCATCGCCGGG CCGATCCTTGGCGGCCTGCTGATTGCGGCCGACATTGCCGGGCTCGGCTGGCGCACGGTGTTCCTCATCAACCTGCCCAT CGGCCTTGCGGCGCTTGCCGCGGGCTGGCGGTTCCTGCCGCGCGAGGTGGCGCACAAGGGCGGGCGGATCGACGTGATCG GCACACTTTCCTTCGGCGCGGCGCTTGCGGCGATGCTGTTTCCGCTGGTGCGCGGGGAACATGTCGGCATGGATACCGCG AGCATGGCGCTGCTGGCGGCATCGCCCCTGCTGATGTGGGCGGCGTGGCGCGGTCTGGTGCGCCGGGCCGGGGCGGGGCG CCCGGTGATCTTCGATCCCGAATTGCTGCACGACGGCCTGTTCCGCACAGGCGCGCTGATCGGCCTCGTTTTCTCGGCGG CCAACACCGGCTTCCTGTTCGTGTTCGCGCACGCTCTCCAGTCGCGGCTCGGCTACAGCCCCCTGCAGACTGGACTGGTG CATATCCCCTTCAGCGCCGGGGTCATGGTCGGCATGGGATTTCTCGGGCGGCGCTACCTGGCGCGGGCAGGCAAGTGGGT CATGGTCTGCGCGGCGCTGGCGCTGCTTGTGGCCGACAGCGCCGCGCTTGGCTGGATCGCGCTTGGCGGGCACGACCTGT TCCTCCTGTTGCCGGCGCTGCTGCTGGCTGGCGTAGGCATGGGTACGCTTTCCGGGCCGGTTTCGCCCGTCGCGCTTGCC AGAGTGGACCGGCGCCATGCGGGGGCTGCCAGCGGCATCCTCAAGACCGTGCTGCAGATGGGCAGTGCGTTCGGCATCGC GCTGGTGGGAAGCGCCTACTTCGCGTTGCGCGGGCCGGTCGCCGGGGCGGGGGCGGGAGGCGTATATGCGGCGCTGGCGG TGATCCTCGTGCTGCTGGTGGTGTGCCTGGTGCTTGCGCTGCTGCTGCCGGCGCGGATCTTTGCGCCGGAACCATCTTCC AAAGCCGCGCAAACCGGATAA
Upstream 100 bases:
>100_bases TCCTCGGCCTGCCAGAACCCTTCGCTCACCTACATGGCGCTGACCGCACGTGCCTGCGATGCGGCGGTCAGGATGCTGCG CGAAGGTGCGATCTGAGCCG
Downstream 100 bases:
>100_bases GCTGGCGCGCGAAACACGCACTGCGGGCTGGAGACTCGCAGGCGTGGGAAGAGGAAGCGCGCAATGGACGATCTGCCGAC GGCCAAGTTCCACACCATGA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 486; Mature: 485
Protein sequence:
>486_residues MANDIAGMTERQKSLAFFTLITALVLEIVDVTIINTALPAMQADFAARGQDLGGDTAQWIAAGYSLAFGLLLILGGRLGD LFGGRAMFLAGVGGFTVASALCGMASDPGLLVAARVLQGAAGAIMAPQVMAVIQILYDPVERIGRLAWFGVIGGLAGIAG PILGGLLIAADIAGLGWRTVFLINLPIGLAALAAGWRFLPREVAHKGGRIDVIGTLSFGAALAAMLFPLVRGEHVGMDTA SMALLAASPLLMWAAWRGLVRRAGAGRPVIFDPELLHDGLFRTGALIGLVFSAANTGFLFVFAHALQSRLGYSPLQTGLV HIPFSAGVMVGMGFLGRRYLARAGKWVMVCAALALLVADSAALGWIALGGHDLFLLLPALLLAGVGMGTLSGPVSPVALA RVDRRHAGAASGILKTVLQMGSAFGIALVGSAYFALRGPVAGAGAGGVYAALAVILVLLVVCLVLALLLPARIFAPEPSS KAAQTG
Sequences:
>Translated_486_residues MANDIAGMTERQKSLAFFTLITALVLEIVDVTIINTALPAMQADFAARGQDLGGDTAQWIAAGYSLAFGLLLILGGRLGD LFGGRAMFLAGVGGFTVASALCGMASDPGLLVAARVLQGAAGAIMAPQVMAVIQILYDPVERIGRLAWFGVIGGLAGIAG PILGGLLIAADIAGLGWRTVFLINLPIGLAALAAGWRFLPREVAHKGGRIDVIGTLSFGAALAAMLFPLVRGEHVGMDTA SMALLAASPLLMWAAWRGLVRRAGAGRPVIFDPELLHDGLFRTGALIGLVFSAANTGFLFVFAHALQSRLGYSPLQTGLV HIPFSAGVMVGMGFLGRRYLARAGKWVMVCAALALLVADSAALGWIALGGHDLFLLLPALLLAGVGMGTLSGPVSPVALA RVDRRHAGAASGILKTVLQMGSAFGIALVGSAYFALRGPVAGAGAGGVYAALAVILVLLVVCLVLALLLPARIFAPEPSS KAAQTG >Mature_485_residues ANDIAGMTERQKSLAFFTLITALVLEIVDVTIINTALPAMQADFAARGQDLGGDTAQWIAAGYSLAFGLLLILGGRLGDL FGGRAMFLAGVGGFTVASALCGMASDPGLLVAARVLQGAAGAIMAPQVMAVIQILYDPVERIGRLAWFGVIGGLAGIAGP ILGGLLIAADIAGLGWRTVFLINLPIGLAALAAGWRFLPREVAHKGGRIDVIGTLSFGAALAAMLFPLVRGEHVGMDTAS MALLAASPLLMWAAWRGLVRRAGAGRPVIFDPELLHDGLFRTGALIGLVFSAANTGFLFVFAHALQSRLGYSPLQTGLVH IPFSAGVMVGMGFLGRRYLARAGKWVMVCAALALLVADSAALGWIALGGHDLFLLLPALLLAGVGMGTLSGPVSPVALAR VDRRHAGAASGILKTVLQMGSAFGIALVGSAYFALRGPVAGAGAGGVYAALAVILVLLVVCLVLALLLPARIFAPEPSSK AAQTG
Specific function: Promotes the efflux of actinorhodin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=430, Percent_Identity=27.6744186046512, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI1790195, Length=429, Percent_Identity=25.4079254079254, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788392, Length=470, Percent_Identity=26.1702127659574, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789042, Length=172, Percent_Identity=30.8139534883721, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1788710, Length=303, Percent_Identity=23.7623762376238, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 49698; Mature: 49567
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANDIAGMTERQKSLAFFTLITALVLEIVDVTIINTALPAMQADFAARGQDLGGDTAQWI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH AAGYSLAFGLLLILGGRLGDLFGGRAMFLAGVGGFTVASALCGMASDPGLLVAARVLQGA HHHHHHHHHHHHHHCCHHHHHHCCCHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCC AGAIMAPQVMAVIQILYDPVERIGRLAWFGVIGGLAGIAGPILGGLLIAADIAGLGWRTV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE FLINLPIGLAALAAGWRFLPREVAHKGGRIDVIGTLSFGAALAAMLFPLVRGEHVGMDTA EEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHH SMALLAASPLLMWAAWRGLVRRAGAGRPVIFDPELLHDGLFRTGALIGLVFSAANTGFLF HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHH VFAHALQSRLGYSPLQTGLVHIPFSAGVMVGMGFLGRRYLARAGKWVMVCAALALLVADS HHHHHHHHHCCCCCHHHCEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC AALGWIALGGHDLFLLLPALLLAGVGMGTLSGPVSPVALARVDRRHAGAASGILKTVLQM CHHCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH GSAFGIALVGSAYFALRGPVAGAGAGGVYAALAVILVLLVVCLVLALLLPARIFAPEPSS CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC KAAQTG CCCCCC >Mature Secondary Structure ANDIAGMTERQKSLAFFTLITALVLEIVDVTIINTALPAMQADFAARGQDLGGDTAQWI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH AAGYSLAFGLLLILGGRLGDLFGGRAMFLAGVGGFTVASALCGMASDPGLLVAARVLQGA HHHHHHHHHHHHHHCCHHHHHHCCCHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCC AGAIMAPQVMAVIQILYDPVERIGRLAWFGVIGGLAGIAGPILGGLLIAADIAGLGWRTV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE FLINLPIGLAALAAGWRFLPREVAHKGGRIDVIGTLSFGAALAAMLFPLVRGEHVGMDTA EEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHH SMALLAASPLLMWAAWRGLVRRAGAGRPVIFDPELLHDGLFRTGALIGLVFSAANTGFLF HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHH VFAHALQSRLGYSPLQTGLVHIPFSAGVMVGMGFLGRRYLARAGKWVMVCAALALLVADS HHHHHHHHHCCCCCHHHCEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC AALGWIALGGHDLFLLLPALLLAGVGMGTLSGPVSPVALARVDRRHAGAASGILKTVLQM CHHCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH GSAFGIALVGSAYFALRGPVAGAGAGGVYAALAVILVLLVVCLVLALLLPARIFAPEPSS CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC KAAQTG CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1878971; 12000953 [H]