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The map label for this gene is ygaV [H]

Identifier: 87199228

GI number: 87199228

Start: 1253875

End: 1254222

Strand: Direct

Name: ygaV [H]

Synonym: Saro_1206

Alternate gene names: 87199228

Gene position: 1253875-1254222 (Clockwise)

Preceding gene: 87199225

Following gene: 87199229

Centisome position: 35.21

GC content: 60.63

Gene sequence:

>348_bases
GTGACCCGATTTCGACGCTATCTGCTGTTGGCAATGAAGCCCGGTAACCTCGCTGACCTGAAGGACAATGCAGCCTCGAT
GGCTGCACGGATGCGCACGATGAGCCATCCGGAGCGGTTGCTCATGCTTTGCAGGATGGACGAGGGTGAAGTTTCGGTAA
GCGAGCTTGTCGAGCTGACCGGCCTTTCGCAATCCGCAGTTTCCCAGCATCTTGCGCGGCTGCGCGACGAGGATGCGGTG
GACAGCCGGGTAGCCGCGCAAGTGCGGTTCTACAGCCTGAAGGACGAGGTCGTCCGCGCGATCATCCACGCGCTTTGCGA
GATCTGCGAGAAGCGCTCCCAGGAATGA

Upstream 100 bases:

>100_bases
TCGGTCATTGGCTGATGCTCCGGCAGGTCATTTATATTCGATAGATTGAATATAAGAAAAATATCATATAATCAAGTGCC
ACGGGCGCCGCCTCTCTTGT

Downstream 100 bases:

>100_bases
GGTCGCCCTAGCCGCGACTTGGCGGTCCATCCCCCCTTGCGGCCCGACACAGAATTAGAGTATTCGTTCTATATTGGCGC
GGCAGCCGGGTATGGACGCG

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MTRFRRYLLLAMKPGNLADLKDNAASMAARMRTMSHPERLLMLCRMDEGEVSVSELVELTGLSQSAVSQHLARLRDEDAV
DSRVAAQVRFYSLKDEVVRAIIHALCEICEKRSQE

Sequences:

>Translated_115_residues
MTRFRRYLLLAMKPGNLADLKDNAASMAARMRTMSHPERLLMLCRMDEGEVSVSELVELTGLSQSAVSQHLARLRDEDAV
DSRVAAQVRFYSLKDEVVRAIIHALCEICEKRSQE
>Mature_114_residues
TRFRRYLLLAMKPGNLADLKDNAASMAARMRTMSHPERLLMLCRMDEGEVSVSELVELTGLSQSAVSQHLARLRDEDAVD
SRVAAQVRFYSLKDEVVRAIIHALCEICEKRSQE

Specific function: Functions as transcription repressor (Probable) [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789021, Length=90, Percent_Identity=51.1111111111111, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 13051; Mature: 12920

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
8.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRFRRYLLLAMKPGNLADLKDNAASMAARMRTMSHPERLLMLCRMDEGEVSVSELVELT
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHH
GLSQSAVSQHLARLRDEDAVDSRVAAQVRFYSLKDEVVRAIIHALCEICEKRSQE
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRFRRYLLLAMKPGNLADLKDNAASMAARMRTMSHPERLLMLCRMDEGEVSVSELVELT
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHH
GLSQSAVSQHLARLRDEDAVDSRVAAQVRFYSLKDEVVRAIIHALCEICEKRSQE
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]