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The map label for this gene is ygdK [C]

Identifier: 87199186

GI number: 87199186

Start: 1206957

End: 1207370

Strand: Direct

Name: ygdK [C]

Synonym: Saro_1164

Alternate gene names: 87199186

Gene position: 1206957-1207370 (Clockwise)

Preceding gene: 87199185

Following gene: 87199187

Centisome position: 33.89

GC content: 67.15

Gene sequence:

>414_bases
ATGCGCAGCCTTGAAGACATCCTCGAGGAGTACGAATTCCTCGACGGCGACGAACGCTACCGCCTGCTCATCGAGCTTGG
CCGCGAGCTTGAGCCGATGCCCGAAGCCCTGAAGACCGACGCGACTCTGGTGCGCGGCTGTTCCGCAAGCGTCTGGGTCT
ATCCCACGCAGGCAGAGGGCGGGCGCCTCCACTTCCTGGCCGACAGCAATGCAGCGATCACCAAGGGCATCGTCGCGCTC
GTCCTTGCCGCGGTCCAGGACCGGCCCGCCGCCGAAGTTGCGCAAAGCGACATCGCCGAAGCGCTCGCGCCGTTCGATCT
CAAGCGGCAGCTGTCGTCCAACCGCACCCAGGGCGTGCCCAACATGATTGCGCTGGTGCGCGAGCACGCCGCGCGCATCG
CGGCCACGGCCTGA

Upstream 100 bases:

>100_bases
GGCCATCGCATCCGGCGTGGACATCTGACCGGCACAAAAGGTGGGCGGGCTTCGCCCCGGTGCCGCTTGAGGCTGCCGAT
CCTTCTGCTAAAGCCGCGTG

Downstream 100 bases:

>100_bases
GGCGCGGGGCAGGGAGGTTGCGCCGCCACCTCTATCTAGCGGGCGGAATCCTCAGCGTGATGTTCGGTGCGATTGGCGCG
TTCCTGCCTATCCTTCCGAC

Product: Fe-S metabolism associated SufE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MRSLEDILEEYEFLDGDERYRLLIELGRELEPMPEALKTDATLVRGCSASVWVYPTQAEGGRLHFLADSNAAITKGIVAL
VLAAVQDRPAAEVAQSDIAEALAPFDLKRQLSSNRTQGVPNMIALVREHAARIAATA

Sequences:

>Translated_137_residues
MRSLEDILEEYEFLDGDERYRLLIELGRELEPMPEALKTDATLVRGCSASVWVYPTQAEGGRLHFLADSNAAITKGIVAL
VLAAVQDRPAAEVAQSDIAEALAPFDLKRQLSSNRTQGVPNMIALVREHAARIAATA
>Mature_137_residues
MRSLEDILEEYEFLDGDERYRLLIELGRELEPMPEALKTDATLVRGCSASVWVYPTQAEGGRLHFLADSNAAITKGIVAL
VLAAVQDRPAAEVAQSDIAEALAPFDLKRQLSSNRTQGVPNMIALVREHAARIAATA

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=107, Percent_Identity=42.9906542056075, Blast_Score=83, Evalue=6e-18,
Organism=Escherichia coli, GI1787969, Length=108, Percent_Identity=26.8518518518519, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 14961; Mature: 14961

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLEDILEEYEFLDGDERYRLLIELGRELEPMPEALKTDATLVRGCSASVWVYPTQAEG
CCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC
GRLHFLADSNAAITKGIVALVLAAVQDRPAAEVAQSDIAEALAPFDLKRQLSSNRTQGVP
CEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCH
NMIALVREHAARIAATA
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSLEDILEEYEFLDGDERYRLLIELGRELEPMPEALKTDATLVRGCSASVWVYPTQAEG
CCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC
GRLHFLADSNAAITKGIVALVLAAVQDRPAAEVAQSDIAEALAPFDLKRQLSSNRTQGVP
CEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCH
NMIALVREHAARIAATA
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7756693; 11481430 [H]