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The map label for this gene is ykgD [C]

Identifier: 87198782

GI number: 87198782

Start: 807011

End: 807910

Strand: Reverse

Name: ykgD [C]

Synonym: Saro_0758

Alternate gene names: 87198782

Gene position: 807910-807011 (Counterclockwise)

Preceding gene: 87198783

Following gene: 87198779

Centisome position: 22.68

GC content: 65.89

Gene sequence:

>900_bases
GTGATGACAAAGGCGGCGGATGGCATGTCCGACTGGGACAACATGGCGATCATCTGCGACGTCCTCGGCCGCGCGCCGGA
TGTCGAGATGGGCTCTATCGGCGAAGGCTGGTCGCTGTGCCGCTGGCGGCAATTCGTCGGCGCCTATACACTGCCCGCGT
TGCCGCAGCCGATCTTCACGGTCCACATCGCCGGCAAGCCTCAGGTCAAGACCTGGGACAAGGGCGGCTGGACGGAGACT
AGCTCGATCCCCGGCTGTGCCACCATCGTGCCTGCGGGGATGCCGACCGGCTGGCTGGTCGATGGCGAGCTTGACGTCGT
CACCCTCTCGATGGCGTCCGATGTGCTGGCCGGTCAGCCGCACGCCGACCAGTTCAACCGCATGCGCTTCGCATTCTCCG
ATCCGCTGGGCGTGGCGCTGACCCGGCAGATCCTGTCCGAAATCTACGCCCCGCAGGCCGAGGAGCGCACCGCCTATGTC
TCGGCCATGGTGGGGGCGCTCAAGGCGCATATCCTCTCCGGCCCGCCAGCGCACGGCAACCCGGTGGACATCCCGGTTTC
GGATTTCTCCGCCTATCGCCTGCACAAGATCATGAACGCGATTCTTGCCGACCCGGCTGCCGAGCACAGCTTGGAAGCGA
TGGCGGCGGTGGCCGGGGTCACGCCATCGCACTTCTGCCGTCTGTTCAAGAAGGCCATCGGCATCACGCCGCACCAATAT
GTCATGAAAGCGCGGCTCGACCGGGCGCAGCAGATGCTCGTACAAACCGAGATGAGCCTTGCGGCGCTGTCCGAAGCGGC
GGGCTTTGCCAGCCAGAGCCACTTCAGCCGCGCCTTCCGTAGCTGGTTCGGCATGGCCCCCAGCGACTTCCGCCAGCAGG
AACGGCGCCGAACCGACTGA

Upstream 100 bases:

>100_bases
TGGCGCGGCATGTTCGCGCATTCGAGGTGGTAGGCGAGCCCTCGCGGGTGCGCTCGAACTTCATCAACGGCTTCAAGCGG
CTCGAGGTCAGGCTACTGGT

Downstream 100 bases:

>100_bases
ACATACGATTGGGAAAGAGAACAATGGCCCAAGCGACAGCAGCCGTAGTGCGCGAACCCGACGGTGCATTCCTGCTCGAA
CAGATCGAAGTGGAGTAGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MMTKAADGMSDWDNMAIICDVLGRAPDVEMGSIGEGWSLCRWRQFVGAYTLPALPQPIFTVHIAGKPQVKTWDKGGWTET
SSIPGCATIVPAGMPTGWLVDGELDVVTLSMASDVLAGQPHADQFNRMRFAFSDPLGVALTRQILSEIYAPQAEERTAYV
SAMVGALKAHILSGPPAHGNPVDIPVSDFSAYRLHKIMNAILADPAAEHSLEAMAAVAGVTPSHFCRLFKKAIGITPHQY
VMKARLDRAQQMLVQTEMSLAALSEAAGFASQSHFSRAFRSWFGMAPSDFRQQERRRTD

Sequences:

>Translated_299_residues
MMTKAADGMSDWDNMAIICDVLGRAPDVEMGSIGEGWSLCRWRQFVGAYTLPALPQPIFTVHIAGKPQVKTWDKGGWTET
SSIPGCATIVPAGMPTGWLVDGELDVVTLSMASDVLAGQPHADQFNRMRFAFSDPLGVALTRQILSEIYAPQAEERTAYV
SAMVGALKAHILSGPPAHGNPVDIPVSDFSAYRLHKIMNAILADPAAEHSLEAMAAVAGVTPSHFCRLFKKAIGITPHQY
VMKARLDRAQQMLVQTEMSLAALSEAAGFASQSHFSRAFRSWFGMAPSDFRQQERRRTD
>Mature_299_residues
MMTKAADGMSDWDNMAIICDVLGRAPDVEMGSIGEGWSLCRWRQFVGAYTLPALPQPIFTVHIAGKPQVKTWDKGGWTET
SSIPGCATIVPAGMPTGWLVDGELDVVTLSMASDVLAGQPHADQFNRMRFAFSDPLGVALTRQILSEIYAPQAEERTAYV
SAMVGALKAHILSGPPAHGNPVDIPVSDFSAYRLHKIMNAILADPAAEHSLEAMAAVAGVTPSHFCRLFKKAIGITPHQY
VMKARLDRAQQMLVQTEMSLAALSEAAGFASQSHFSRAFRSWFGMAPSDFRQQERRRTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=104, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32564; Mature: 32564

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTKAADGMSDWDNMAIICDVLGRAPDVEMGSIGEGWSLCRWRQFVGAYTLPALPQPIFT
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEE
VHIAGKPQVKTWDKGGWTETSSIPGCATIVPAGMPTGWLVDGELDVVTLSMASDVLAGQP
EEECCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCEEECCCCCEEEEEHHHHHHCCCC
HADQFNRMRFAFSDPLGVALTRQILSEIYAPQAEERTAYVSAMVGALKAHILSGPPAHGN
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PVDIPVSDFSAYRLHKIMNAILADPAAEHSLEAMAAVAGVTPSHFCRLFKKAIGITPHQY
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHH
VMKARLDRAQQMLVQTEMSLAALSEAAGFASQSHFSRAFRSWFGMAPSDFRQQERRRTD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MMTKAADGMSDWDNMAIICDVLGRAPDVEMGSIGEGWSLCRWRQFVGAYTLPALPQPIFT
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEE
VHIAGKPQVKTWDKGGWTETSSIPGCATIVPAGMPTGWLVDGELDVVTLSMASDVLAGQP
EEECCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCEEECCCCCEEEEEHHHHHHCCCC
HADQFNRMRFAFSDPLGVALTRQILSEIYAPQAEERTAYVSAMVGALKAHILSGPPAHGN
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PVDIPVSDFSAYRLHKIMNAILADPAAEHSLEAMAAVAGVTPSHFCRLFKKAIGITPHQY
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHH
VMKARLDRAQQMLVQTEMSLAALSEAAGFASQSHFSRAFRSWFGMAPSDFRQQERRRTD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]