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The map label for this gene is yubM [H]

Identifier: 87198649

GI number: 87198649

Start: 669827

End: 671284

Strand: Reverse

Name: yubM [H]

Synonym: Saro_0625

Alternate gene names: 87198649

Gene position: 671284-669827 (Counterclockwise)

Preceding gene: 87198650

Following gene: 87198648

Centisome position: 18.85

GC content: 63.92

Gene sequence:

>1458_bases
ATGTCGATCACTACCCTGCCCCTTAGCTCGCTCATCCTGTCCAAGCTCAACGTCCGCCATACGGAACGCGACGCCGATAT
CGCCGCGCTCGCCGACGACATCGCTGCGCGTGGCCTGAAACAGAACCTGGTCGTTATCCCGGCCCACTTCCTTACTGGCG
AGGCCGAGGCCGACTGGGACAGCAAGTGGGAAGTCATTGCCGGCGGCCGTCGCTTCCAGGCGATGCAGCTGCTCGTGGCG
GATGGTCGGCTACCTGCCGATCACGAAGTGCCCTGCCTGCTGGAAGATCGCGACGACGCCAGCGAGACCTCATTGTCGGA
GAACCTGCATAAGGTCGCAATGAACCCGGCCGACGAATTCGGCGCGTTCAAGGCGATCGTCGACCAGCGCATGTCTCCCA
AGCACGGCGAGAGCGAGGCCACCGCGATTGCCTACACCGCCAAGCGTTTTGGCAAGACGGTCAGCTACGTCGAAGGCCGC
ATGCGCCTCGCGGATCTCTGCCCCGACGTGCTCGAGGCGCTGCGAACCGACAAGATCGGACTGGAGGCGGCGAAGGCCTA
TGCCGCCACCACCGATCACGCGCTGCAGCTGAAGGTGTTCAAGGAACGCGAGAAGGACACGTGGAACGGCCACAAGCCCA
GCACCATCCGCGATGCCATCCGCAACCGAACCTTGCCGCTCGACCACGCCCTGGTCGAGTTCGTCGGCCTCGTCACCTAT
CAGGCCGAAGGCGGACGCATCGAAGGCGAGATGTTCATGGGCGCCGAAGGCCAGCAACGCGTGGTCGACGTCACCCTGCT
CGAAAGCCTCGCCAGGAAGATTGCAGAAGCGGCAATCCCCGCGCTCATCAAGGAACACGGCTTCAAGGAAGGCCTCTACG
CGCCGGGCCAAGGCATCGGGTACTATGCTAAATGGCCCAAGGCCCCCTCCGGCTACATGAAGAACTGGGGCGACGTCGAA
GGCCTGAGCAAGGCCAAGCGCAAGCAGCTGGTCGGCGTCTACGCGCTCGACAAGGATCGTGAGGACGGCGTTACCAAGGT
CTCCCTGATCGGCACCTATAAGCCCGAGGAAAAGCAGGCACCGCGCGAAGAGCGAGACTGGGAAGCCGAGCGCGCAGCCA
GCCAGCGTGCCTACCAGGTCGGCATCCTTGCCGCCCGTCTGGCCGTACCCCAACTCACCGGTGGCCTTCTGAAGGATACC
GAGCTCGACGGGCGCACCTTCTGGCCGAAATACTCTCCCCGTCTGGTCGACGAAGATCCGGATGATGAGAACTTCAAGCT
CGTCGCCATGATGATCCGCGTGCCTGTTGCCGACATCGAGGCGAACCGCGCAGAGGCCGAACGCCTCTACGACGAGGAAC
TCGCTGCCGAGGAAGCCGCACGGGCCGCGCCACAGTCCCAAGACGATGACGAAGACGACGGCGCCGACGAACTGGTGACC
GACGAGGCGGAGGGCTGA

Upstream 100 bases:

>100_bases
AACAGTGCGACCAGCTTGTCAGCCGCGAGAAGGCCCGCGCCTGCACCGACCGCTTCTGCACCGCCCGCGCAGACGCCTGA
AACCAGCGAAAGGCAAATCC

Downstream 100 bases:

>100_bases
ACGATGGCCGATTTTACTCCCTCCAAAGCGCTGGCGGACGTCACAACCGAGCGGCAACGCCAGATCGAAGTCGAAGGGTA
CACCGCGCAGCATGATGACG

Product: ParB-like nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MSITTLPLSSLILSKLNVRHTERDADIAALADDIAARGLKQNLVVIPAHFLTGEAEADWDSKWEVIAGGRRFQAMQLLVA
DGRLPADHEVPCLLEDRDDASETSLSENLHKVAMNPADEFGAFKAIVDQRMSPKHGESEATAIAYTAKRFGKTVSYVEGR
MRLADLCPDVLEALRTDKIGLEAAKAYAATTDHALQLKVFKEREKDTWNGHKPSTIRDAIRNRTLPLDHALVEFVGLVTY
QAEGGRIEGEMFMGAEGQQRVVDVTLLESLARKIAEAAIPALIKEHGFKEGLYAPGQGIGYYAKWPKAPSGYMKNWGDVE
GLSKAKRKQLVGVYALDKDREDGVTKVSLIGTYKPEEKQAPREERDWEAERAASQRAYQVGILAARLAVPQLTGGLLKDT
ELDGRTFWPKYSPRLVDEDPDDENFKLVAMMIRVPVADIEANRAEAERLYDEELAAEEAARAAPQSQDDDEDDGADELVT
DEAEG

Sequences:

>Translated_485_residues
MSITTLPLSSLILSKLNVRHTERDADIAALADDIAARGLKQNLVVIPAHFLTGEAEADWDSKWEVIAGGRRFQAMQLLVA
DGRLPADHEVPCLLEDRDDASETSLSENLHKVAMNPADEFGAFKAIVDQRMSPKHGESEATAIAYTAKRFGKTVSYVEGR
MRLADLCPDVLEALRTDKIGLEAAKAYAATTDHALQLKVFKEREKDTWNGHKPSTIRDAIRNRTLPLDHALVEFVGLVTY
QAEGGRIEGEMFMGAEGQQRVVDVTLLESLARKIAEAAIPALIKEHGFKEGLYAPGQGIGYYAKWPKAPSGYMKNWGDVE
GLSKAKRKQLVGVYALDKDREDGVTKVSLIGTYKPEEKQAPREERDWEAERAASQRAYQVGILAARLAVPQLTGGLLKDT
ELDGRTFWPKYSPRLVDEDPDDENFKLVAMMIRVPVADIEANRAEAERLYDEELAAEEAARAAPQSQDDDEDDGADELVT
DEAEG
>Mature_484_residues
SITTLPLSSLILSKLNVRHTERDADIAALADDIAARGLKQNLVVIPAHFLTGEAEADWDSKWEVIAGGRRFQAMQLLVAD
GRLPADHEVPCLLEDRDDASETSLSENLHKVAMNPADEFGAFKAIVDQRMSPKHGESEATAIAYTAKRFGKTVSYVEGRM
RLADLCPDVLEALRTDKIGLEAAKAYAATTDHALQLKVFKEREKDTWNGHKPSTIRDAIRNRTLPLDHALVEFVGLVTYQ
AEGGRIEGEMFMGAEGQQRVVDVTLLESLARKIAEAAIPALIKEHGFKEGLYAPGQGIGYYAKWPKAPSGYMKNWGDVEG
LSKAKRKQLVGVYALDKDREDGVTKVSLIGTYKPEEKQAPREERDWEAERAASQRAYQVGILAARLAVPQLTGGLLKDTE
LDGRTFWPKYSPRLVDEDPDDENFKLVAMMIRVPVADIEANRAEAERLYDEELAAEEAARAAPQSQDDDEDDGADELVTD
EAEG

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 53556; Mature: 53425

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITTLPLSSLILSKLNVRHTERDADIAALADDIAARGLKQNLVVIPAHFLTGEAEADWD
CCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCC
SKWEVIAGGRRFQAMQLLVADGRLPADHEVPCLLEDRDDASETSLSENLHKVAMNPADEF
CCEEEEECCCHHHHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHH
GAFKAIVDQRMSPKHGESEATAIAYTAKRFGKTVSYVEGRMRLADLCPDVLEALRTDKIG
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCC
LEAAKAYAATTDHALQLKVFKEREKDTWNGHKPSTIRDAIRNRTLPLDHALVEFVGLVTY
HHHHHHHHCCCCCCEEEHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHEE
QAEGGRIEGEMFMGAEGQQRVVDVTLLESLARKIAEAAIPALIKEHGFKEGLYAPGQGIG
ECCCCEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
YYAKWPKAPSGYMKNWGDVEGLSKAKRKQLVGVYALDKDREDGVTKVSLIGTYKPEEKQA
CCCCCCCCCCCHHCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCEEEEEEECCCCCHHCC
PREERDWEAERAASQRAYQVGILAARLAVPQLTGGLLKDTELDGRTFWPKYSPRLVDEDP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCC
DDENFKLVAMMIRVPVADIEANRAEAERLYDEELAAEEAARAAPQSQDDDEDDGADELVT
CCCCCEEEEHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCC
DEAEG
CCCCC
>Mature Secondary Structure 
SITTLPLSSLILSKLNVRHTERDADIAALADDIAARGLKQNLVVIPAHFLTGEAEADWD
CCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCC
SKWEVIAGGRRFQAMQLLVADGRLPADHEVPCLLEDRDDASETSLSENLHKVAMNPADEF
CCEEEEECCCHHHHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHH
GAFKAIVDQRMSPKHGESEATAIAYTAKRFGKTVSYVEGRMRLADLCPDVLEALRTDKIG
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCC
LEAAKAYAATTDHALQLKVFKEREKDTWNGHKPSTIRDAIRNRTLPLDHALVEFVGLVTY
HHHHHHHHCCCCCCEEEHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHEE
QAEGGRIEGEMFMGAEGQQRVVDVTLLESLARKIAEAAIPALIKEHGFKEGLYAPGQGIG
ECCCCEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
YYAKWPKAPSGYMKNWGDVEGLSKAKRKQLVGVYALDKDREDGVTKVSLIGTYKPEEKQA
CCCCCCCCCCCHHCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCEEEEEEECCCCCHHCC
PREERDWEAERAASQRAYQVGILAARLAVPQLTGGLLKDTELDGRTFWPKYSPRLVDEDP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCC
DDENFKLVAMMIRVPVADIEANRAEAERLYDEELAAEEAARAAPQSQDDDEDDGADELVT
CCCCCEEEEHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCC
DEAEG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]