| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is dut [H]
Identifier: 87198614
GI number: 87198614
Start: 635565
End: 636038
Strand: Reverse
Name: dut [H]
Synonym: Saro_0590
Alternate gene names: 87198614
Gene position: 636038-635565 (Counterclockwise)
Preceding gene: 87198615
Following gene: 87198608
Centisome position: 17.86
GC content: 68.78
Gene sequence:
>474_bases TTGCCGATGTCCTCTCCTGAAATCCCCGTCCTCGTGAAGCGCCTGCCCCACGGGCAGGACCTTCCCCTTCCCGCCTACGC CACCGAGGGCGCGGCGGGCATGGACGTGGTCTCGGCCGAGGACGTGGATCTTGCTCCCGGCGGGCGCCATGCCGTCGCCA CCGGCCTTTCCGTCGCGATTCCGCATGGTTACGAGATCCAGGTGCGTCCCCGCTCGGGCCTCGCGCTCAAGCATGGGGTC ACCGTACCCAACACGCCCGGCACCATCGACAGCGACTATCGCGGCGAACTCAAGGTCATCATGATCAACCTCGGGGCCGA AACCTTCTCGATCCGCCGGGGGGACCGCGTGGCGCAGCTCGTCGTCGCACCTGTCACGCGAGGATCGTGGGTCGAGGTCG ATGAGCTCGACGCCACCCAGCGGGGCGAGGGCGGCTTCGGATCGACCGGCGGCCTCGCGGCTCTCAAGGGCTGA
Upstream 100 bases:
>100_bases GGCGGTGAAATCAACGGCTTGCACATCGTCAGCAGCAGCGGCGTCGAAAGCCTCCCGGAAATGCCCAAGGACGCGGCGGC GGCCGCGCTCATCGAAAGAA
Downstream 100 bases:
>100_bases AAAAAGGGGCCCCGCGTCGCCGCCGGGCCCCTTCGTGTATGTTCAGGTGCTTTCAGGTGCCGTTCGGGTCAATTGACCTT CTTGACCGTCTTCTTCTCGG
Product: deoxyuridine 5'-triphosphate nucleotidohydrolase
Products: NA
Alternate protein names: dUTPase; dUTP pyrophosphatase [H]
Number of amino acids: Translated: 157; Mature: 156
Protein sequence:
>157_residues MPMSSPEIPVLVKRLPHGQDLPLPAYATEGAAGMDVVSAEDVDLAPGGRHAVATGLSVAIPHGYEIQVRPRSGLALKHGV TVPNTPGTIDSDYRGELKVIMINLGAETFSIRRGDRVAQLVVAPVTRGSWVEVDELDATQRGEGGFGSTGGLAALKG
Sequences:
>Translated_157_residues MPMSSPEIPVLVKRLPHGQDLPLPAYATEGAAGMDVVSAEDVDLAPGGRHAVATGLSVAIPHGYEIQVRPRSGLALKHGV TVPNTPGTIDSDYRGELKVIMINLGAETFSIRRGDRVAQLVVAPVTRGSWVEVDELDATQRGEGGFGSTGGLAALKG >Mature_156_residues PMSSPEIPVLVKRLPHGQDLPLPAYATEGAAGMDVVSAEDVDLAPGGRHAVATGLSVAIPHGYEIQVRPRSGLALKHGVT VPNTPGTIDSDYRGELKVIMINLGAETFSIRRGDRVAQLVVAPVTRGSWVEVDELDATQRGEGGFGSTGGLAALKG
Specific function: This enzyme is involved in nucleotide metabolism:it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA [H]
COG id: COG0756
COG function: function code F; dUTPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dUTPase family [H]
Homologues:
Organism=Homo sapiens, GI4503423, Length=127, Percent_Identity=44.0944881889764, Blast_Score=106, Evalue=9e-24, Organism=Homo sapiens, GI70906444, Length=127, Percent_Identity=44.0944881889764, Blast_Score=106, Evalue=1e-23, Organism=Homo sapiens, GI70906441, Length=127, Percent_Identity=44.0944881889764, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1790071, Length=151, Percent_Identity=41.7218543046358, Blast_Score=118, Evalue=2e-28, Organism=Caenorhabditis elegans, GI71988561, Length=146, Percent_Identity=43.8356164383562, Blast_Score=128, Evalue=1e-30, Organism=Saccharomyces cerevisiae, GI6319729, Length=129, Percent_Identity=39.5348837209302, Blast_Score=97, Evalue=9e-22, Organism=Drosophila melanogaster, GI19921126, Length=127, Percent_Identity=42.5196850393701, Blast_Score=97, Evalue=4e-21, Organism=Drosophila melanogaster, GI24583610, Length=127, Percent_Identity=42.5196850393701, Blast_Score=97, Evalue=4e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008180 - InterPro: IPR008181 [H]
Pfam domain/function: PF00692 dUTPase [H]
EC number: =3.6.1.23 [H]
Molecular weight: Translated: 16331; Mature: 16200
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMSSPEIPVLVKRLPHGQDLPLPAYATEGAAGMDVVSAEDVDLAPGGRHAVATGLSVAI CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCEEEEC PHGYEIQVRPRSGLALKHGVTVPNTPGTIDSDYRGELKVIMINLGAETFSIRRGDRVAQL CCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCEEEE VVAPVTRGSWVEVDELDATQRGEGGFGSTGGLAALKG EEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure PMSSPEIPVLVKRLPHGQDLPLPAYATEGAAGMDVVSAEDVDLAPGGRHAVATGLSVAI CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCEEEEC PHGYEIQVRPRSGLALKHGVTVPNTPGTIDSDYRGELKVIMINLGAETFSIRRGDRVAQL CCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCEEEE VVAPVTRGSWVEVDELDATQRGEGGFGSTGGLAALKG EEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA