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The map label for this gene is ydeB [H]

Identifier: 87198150

GI number: 87198150

Start: 126726

End: 127250

Strand: Direct

Name: ydeB [H]

Synonym: Saro_0124

Alternate gene names: 87198150

Gene position: 126726-127250 (Clockwise)

Preceding gene: 87198149

Following gene: 87198151

Centisome position: 3.56

GC content: 60.38

Gene sequence:

>525_bases
ATGGCAGGTAAGGCACTCGCCTTCGATGTTGGGGACTACGTCGTTTACCCGAAGCACGGCGTCGGCCGGGTGGTCGAACT
TCAGGATGAAGAAATTGCCGGCATGAAGCTGCAGCTCTACGTGCTGCGCTTCGAGAAGGAACGCATGACGCTGCGCGTTC
CTGTGAACAAGGTCGAAGCGATCGGCATGCGCAAGCTGTCGTCGGACAAGACGCTGCGCGAAGCGCTCGATACGCTCAAG
GGCAAGCCCAAGGTCAAGCGCACCATGTGGTCGCGCCGCGCCCAGGAATACGAAGCGAAGATCAACTCGGGCGACCTCGT
GTCGATCGCCGAAGTGACTCGCGATCTGTTCCGTGCCGATGACCAGCCTGAACAGTCGTACTCGGAACGACAGATCTTCG
AAGCGGCTTCGTCGCGCCTGGCCCGCGAACTCGCGGCGATGGAAAAGACCGACGAGCCCGCTGCTCTGAAGAAGATCCTC
GCGATCCTCAACGAACACGCGCCCAAGTACTACGAAACGGCCTGA

Upstream 100 bases:

>100_bases
GCCTCGCAAGACCGCCTGACGGGCGGCCAGTTGCCTCTTTCTCCCCGAAAGGCCCATCGCTCTCCCATGGCCGGTTCTGC
CCGCGTCGAAAGGATTACCA

Downstream 100 bases:

>100_bases
TCCTTTTCGCTGCACTGGCGCTGAAAAAGGCCTCCGGGAAACCGGGGGCCTTTTTCGCATTCACCGTCCCGCCATCTCAC
GGCCGACGAACCGGCGCTGC

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MAGKALAFDVGDYVVYPKHGVGRVVELQDEEIAGMKLQLYVLRFEKERMTLRVPVNKVEAIGMRKLSSDKTLREALDTLK
GKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQPEQSYSERQIFEAASSRLARELAAMEKTDEPAALKKIL
AILNEHAPKYYETA

Sequences:

>Translated_174_residues
MAGKALAFDVGDYVVYPKHGVGRVVELQDEEIAGMKLQLYVLRFEKERMTLRVPVNKVEAIGMRKLSSDKTLREALDTLK
GKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQPEQSYSERQIFEAASSRLARELAAMEKTDEPAALKKIL
AILNEHAPKYYETA
>Mature_173_residues
AGKALAFDVGDYVVYPKHGVGRVVELQDEEIAGMKLQLYVLRFEKERMTLRVPVNKVEAIGMRKLSSDKTLREALDTLKG
KPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQPEQSYSERQIFEAASSRLARELAAMEKTDEPAALKKILA
ILNEHAPKYYETA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 19777; Mature: 19646

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKALAFDVGDYVVYPKHGVGRVVELQDEEIAGMKLQLYVLRFEKERMTLRVPVNKVEA
CCCCEEEEECCCEEEECCCCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEECCHHHHHH
IGMRKLSSDKTLREALDTLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRAD
HHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCC
DQPEQSYSERQIFEAASSRLARELAAMEKTDEPAALKKILAILNEHAPKYYETA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AGKALAFDVGDYVVYPKHGVGRVVELQDEEIAGMKLQLYVLRFEKERMTLRVPVNKVEA
CCCEEEEECCCEEEECCCCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEECCHHHHHH
IGMRKLSSDKTLREALDTLKGKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRAD
HHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCC
DQPEQSYSERQIFEAASSRLARELAAMEKTDEPAALKKILAILNEHAPKYYETA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]