| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87198109
Identifier: 87198109
GI number: 87198109
Start: 86066
End: 86605
Strand: Direct
Name: 87198109
Synonym: Saro_0083
Alternate gene names: NA
Gene position: 86066-86605 (Clockwise)
Preceding gene: 87198108
Following gene: 87198112
Centisome position: 2.42
GC content: 69.26
Gene sequence:
>540_bases ATGGCGGGAATGCCGTGCCCGGATTATGCGACGGTCATGGCCTTCATGCCCAGCCTCAACCCGCGCATCGTCGACGCGCT CCATGCCCAAGCCCTCGGCCTTGCCGACGCCGTGCGAACGCGGTTCGAGGCCTTGCGCCGCGAAGCGCTCGACGCGGCCG GGTCCGATTGCGAGGACCTGCACAGGGTGCGCGTGTCCTGCGAGGCGCTGCGCACGACAACCCGGGTGATGCATTGCCTT GCCTGGCTGCTCAACCACCGTGCCTATTTCGCGGGCGAGCTGTCCCAGCTCCAGCTCCGCCGCCACGGTCGCCTGATCAC GAACTTCCCCGCCAGCGAGCCCGAGGTCGTCGCAAGCCTGCCCGATGACGCGCGCACGCTGGTGCACGAAAGCGAACGTC TCTACGAACGCATCCAGCGCCTCGAGAATGCCTGGCGCACGCAGGGCGCCAGCAGCGAGAGCGCCATCGATGCTTTGCGC CAGCGCCTCGTACGCGCGGTCGCCGGCACGTCGGACGCCGGGACTTCGGACGCCGCCTGA
Upstream 100 bases:
>100_bases ATCGCCTGATTTCAGTAATGTACCTCTTTCTGCCAGATTGGCGGACCTGTCCCGTTAAGAAACGTTCATGAATTGCTCCC CTGCACCGGGGCAAAGGCGG
Downstream 100 bases:
>100_bases TCGATCAGACTTTCGCGAGCGCCTCGCGCCACCGCGCGATCCGCGCGGCCCGGACACCTGGCGCCATGCGCGGTTCGAAC CGCGTGACGGACCCGCGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MAGMPCPDYATVMAFMPSLNPRIVDALHAQALGLADAVRTRFEALRREALDAAGSDCEDLHRVRVSCEALRTTTRVMHCL AWLLNHRAYFAGELSQLQLRRHGRLITNFPASEPEVVASLPDDARTLVHESERLYERIQRLENAWRTQGASSESAIDALR QRLVRAVAGTSDAGTSDAA
Sequences:
>Translated_179_residues MAGMPCPDYATVMAFMPSLNPRIVDALHAQALGLADAVRTRFEALRREALDAAGSDCEDLHRVRVSCEALRTTTRVMHCL AWLLNHRAYFAGELSQLQLRRHGRLITNFPASEPEVVASLPDDARTLVHESERLYERIQRLENAWRTQGASSESAIDALR QRLVRAVAGTSDAGTSDAA >Mature_178_residues AGMPCPDYATVMAFMPSLNPRIVDALHAQALGLADAVRTRFEALRREALDAAGSDCEDLHRVRVSCEALRTTTRVMHCLA WLLNHRAYFAGELSQLQLRRHGRLITNFPASEPEVVASLPDDARTLVHESERLYERIQRLENAWRTQGASSESAIDALRQ RLVRAVAGTSDAGTSDAA
Specific function: Unknown
COG id: COG5317
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19783; Mature: 19651
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGMPCPDYATVMAFMPSLNPRIVDALHAQALGLADAVRTRFEALRREALDAAGSDCEDL CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH HRVRVSCEALRTTTRVMHCLAWLLNHRAYFAGELSQLQLRRHGRLITNFPASEPEVVASL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHCC PDDARTLVHESERLYERIQRLENAWRTQGASSESAIDALRQRLVRAVAGTSDAGTSDAA CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure AGMPCPDYATVMAFMPSLNPRIVDALHAQALGLADAVRTRFEALRREALDAAGSDCEDL CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH HRVRVSCEALRTTTRVMHCLAWLLNHRAYFAGELSQLQLRRHGRLITNFPASEPEVVASL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHCC PDDARTLVHESERLYERIQRLENAWRTQGASSESAIDALRQRLVRAVAGTSDAGTSDAA CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA