| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198095
Identifier: 87198095
GI number: 87198095
Start: 71824
End: 72219
Strand: Direct
Name: 87198095
Synonym: Saro_0069
Alternate gene names: NA
Gene position: 71824-72219 (Clockwise)
Preceding gene: 87198094
Following gene: 87198096
Centisome position: 2.02
GC content: 67.93
Gene sequence:
>396_bases TTGGCCACCGAAGCACCCGCCCTTTCCCCCTACGACCGCATCGGCGGCAGAGAAGTTCTGCGCCGCATCACCGACCGCTT CTACGACCTCATGGACACGGACCCGGCCTATGCGGAACTGCGCGCGATGCACGCGCCGGATCTCTCGCCGATGCGGGAAG CGCTTGCCGGCTTTCTGTCAGGCTGGTGCGGCGGCCCGCGAGGATGGTTCGAGGCCAATCCCGGCAAGTGCATGATGTCG ATGCACAAGCCCTTCCCGATCACCCGCCAGACGGCCACGCAGTGGGCCGACTGTATGTCGCGCGCCATCGCCGACGCTGC GCCGGAGGACACCGAGGTCGCCGACGCCATGGCGCAGGTTCTCGGCCAGATGGCCAAGGGCATGGCCCGCGACTGA
Upstream 100 bases:
>100_bases TCGCGCGCGCTTCCCCGGAGCGATTGATCGCCGTCAATGCGTGTCGCGCGAAGGACGGGCAGGAACAAGGCTTCCGATCC CTGTTCCCGGAGCTGATCCC
Downstream 100 bases:
>100_bases CCTGCAAAGAAGGGTTTGGGCTTAAGGTCGCGTGCGCTAGGCTCTCCGCGTGATCCACTACGACCGCAACCGCCGCCGCT TCGCCATCGCGCTCGCCGCA
Product: globin
Products: NA
Alternate protein names: Globin-Like Protein; Globin Family Protein; Hemoglobin-Like Protein; Hemoglobin Protein; Protozoan/Cyanobacterial Globin; Globin Family; Protozoan/Cyanobacterial Globin Family Protein; Hemoglobin-Like Protein HbO
Number of amino acids: Translated: 131; Mature: 130
Protein sequence:
>131_residues MATEAPALSPYDRIGGREVLRRITDRFYDLMDTDPAYAELRAMHAPDLSPMREALAGFLSGWCGGPRGWFEANPGKCMMS MHKPFPITRQTATQWADCMSRAIADAAPEDTEVADAMAQVLGQMAKGMARD
Sequences:
>Translated_131_residues MATEAPALSPYDRIGGREVLRRITDRFYDLMDTDPAYAELRAMHAPDLSPMREALAGFLSGWCGGPRGWFEANPGKCMMS MHKPFPITRQTATQWADCMSRAIADAAPEDTEVADAMAQVLGQMAKGMARD >Mature_130_residues ATEAPALSPYDRIGGREVLRRITDRFYDLMDTDPAYAELRAMHAPDLSPMREALAGFLSGWCGGPRGWFEANPGKCMMSM HKPFPITRQTATQWADCMSRAIADAAPEDTEVADAMAQVLGQMAKGMARD
Specific function: Unknown
COG id: COG2346
COG function: function code R; Truncated hemoglobins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14414; Mature: 14282
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS01213 GLOBIN_FAM_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 8.4 %Met (Translated Protein) 10.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 7.7 %Met (Mature Protein) 10.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATEAPALSPYDRIGGREVLRRITDRFYDLMDTDPAYAELRAMHAPDLSPMREALAGFLS CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHH GWCGGPRGWFEANPGKCMMSMHKPFPITRQTATQWADCMSRAIADAAPEDTEVADAMAQV HHCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LGQMAKGMARD HHHHHHHHCCC >Mature Secondary Structure ATEAPALSPYDRIGGREVLRRITDRFYDLMDTDPAYAELRAMHAPDLSPMREALAGFLS CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHH GWCGGPRGWFEANPGKCMMSMHKPFPITRQTATQWADCMSRAIADAAPEDTEVADAMAQV HHCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LGQMAKGMARD HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA