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The map label for this gene is yngJ [H]

Identifier: 86751739

GI number: 86751739

Start: 5245456

End: 5246721

Strand: Direct

Name: yngJ [H]

Synonym: RPB_4641

Alternate gene names: 86751739

Gene position: 5245456-5246721 (Clockwise)

Preceding gene: 86751738

Following gene: 86751741

Centisome position: 98.38

GC content: 66.67

Gene sequence:

>1266_bases
ATGGATTTCGACGACAGCGACAAGGTCGCACGGCTACGCGCGCAGCTCTCCGACTTCATGCGCTTTCACGTCGAACCGGC
GAATGTCGCCTGGCACCGCGACGTCGCCGCAGGCCGCTATCCGTCGGCGCTGATCGAGCGGCTGAAGTCTCGCGCCTTCT
CCGAGGACTTGTGGAATCTGTTTCTGCCGAGCCTCGGCGACGACGATCCCGGCCAGCGCCTGAGCAATCTCGAATACGCG
CCACTGGCCGAAATCATGGGCCGGATTCACTGGGCGTCGGAAGTGTTCAACTGCAGCGCGCCCGACACCGGCAATATGGA
ACTGCTGCAGCTCGCCGCGACGCCGGAGCAGCGCCGGCAATGGCTGGAGCCGCTGCTGATCGGCGAGATCCGCTCCTGTT
TTGCGATGAGCGAGCCCGACGCCGCCTCGTCCGACGCCCGCAACATCCGCACCACCATCGCCCGCGACGGCGACGACTAC
GTTGTCAACGGTCGCAAATGGTTCATCACCGGGGCCGCGCATCCGAACTGCAAGCTGGCGATCGTGATGGGCGTCACCGG
CGATCACCTCGACCCGAATTCCACCGAACGGCATTCGATGCTGCTGGTGCCGATGGACACCCCCGGGCTGAGCATCGTCC
GCAACATTCCGGTGATGCACTATCACTCTCCGGAAGGGCATTGCGAGCTTCTGTTCCGCGACGTCCGGGTGCCGGTCACG
GCTCTGCTCGGCGAACAGGGCAAGGGCTTCCGCCTGGCGCAGGACCGGCTCGGCCCCGGCCGGGTCCATCACTGCATGCG
CACGATCGGGCAGTGCGAGGTCGCGCTCGAACTGATGTGTGAGCGCGCGCTGGAACGCAAGGCGTTCGGCAGGCATCTGG
CCGACTACGCCAACATCCAGGACTGGATTGCGGAGTCGCGCCTGGAAATCGATCAGGCGCGCCTGCTGGTGATGAAGGCG
GCGCATCGCATGGACCGCGAAGGCAATGCGGCGGCTCGCGTCGACGTCTCGGCGATCAAGCTGGTCGCCGCACGGCTGCA
GACGCGAATCGTCGACCGCGCCATGCAGGTGTTCGGCGCGATGGGTCTGACACCGGATACGCCGCTGTCCTATCTGTGGA
CGTGGGGACGGGCGATGCGCTTTCTCGACGGCCCGGACGAAGTGCATCTGCGCGTCGTCGCGCGGGCGGAGCTGGCGTCG
GCCAAGGCCCAGGCCGGCCGCAATGCCCACCACTTCGTCCCGCCGGACGCCCTGCTCGGCGGCTGA

Upstream 100 bases:

>100_bases
CCTCAGCCTCAAGCGCGACTGATGCGTCGCGCGGGACGCTGCGGACATTCCCCGCCATCCGCCCCGCCGCGCCGCGGCCC
ATCCTGCTGAAGGCCGCGCC

Downstream 100 bases:

>100_bases
TCAGGCGCGAGGCTGCTTCTCGATCACGGTCACGATCCAGCGCGGCGTTTCGCCGGTGGTATCCTCCTTGACCGCACGAA
CGATACCAGTGATCGAGGAG

Product: Acyl-CoA dehydrogenase-like

Products: 2,3-dehydroacyl-CoA; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MDFDDSDKVARLRAQLSDFMRFHVEPANVAWHRDVAAGRYPSALIERLKSRAFSEDLWNLFLPSLGDDDPGQRLSNLEYA
PLAEIMGRIHWASEVFNCSAPDTGNMELLQLAATPEQRRQWLEPLLIGEIRSCFAMSEPDAASSDARNIRTTIARDGDDY
VVNGRKWFITGAAHPNCKLAIVMGVTGDHLDPNSTERHSMLLVPMDTPGLSIVRNIPVMHYHSPEGHCELLFRDVRVPVT
ALLGEQGKGFRLAQDRLGPGRVHHCMRTIGQCEVALELMCERALERKAFGRHLADYANIQDWIAESRLEIDQARLLVMKA
AHRMDREGNAAARVDVSAIKLVAARLQTRIVDRAMQVFGAMGLTPDTPLSYLWTWGRAMRFLDGPDEVHLRVVARAELAS
AKAQAGRNAHHFVPPDALLGG

Sequences:

>Translated_421_residues
MDFDDSDKVARLRAQLSDFMRFHVEPANVAWHRDVAAGRYPSALIERLKSRAFSEDLWNLFLPSLGDDDPGQRLSNLEYA
PLAEIMGRIHWASEVFNCSAPDTGNMELLQLAATPEQRRQWLEPLLIGEIRSCFAMSEPDAASSDARNIRTTIARDGDDY
VVNGRKWFITGAAHPNCKLAIVMGVTGDHLDPNSTERHSMLLVPMDTPGLSIVRNIPVMHYHSPEGHCELLFRDVRVPVT
ALLGEQGKGFRLAQDRLGPGRVHHCMRTIGQCEVALELMCERALERKAFGRHLADYANIQDWIAESRLEIDQARLLVMKA
AHRMDREGNAAARVDVSAIKLVAARLQTRIVDRAMQVFGAMGLTPDTPLSYLWTWGRAMRFLDGPDEVHLRVVARAELAS
AKAQAGRNAHHFVPPDALLGG
>Mature_421_residues
MDFDDSDKVARLRAQLSDFMRFHVEPANVAWHRDVAAGRYPSALIERLKSRAFSEDLWNLFLPSLGDDDPGQRLSNLEYA
PLAEIMGRIHWASEVFNCSAPDTGNMELLQLAATPEQRRQWLEPLLIGEIRSCFAMSEPDAASSDARNIRTTIARDGDDY
VVNGRKWFITGAAHPNCKLAIVMGVTGDHLDPNSTERHSMLLVPMDTPGLSIVRNIPVMHYHSPEGHCELLFRDVRVPVT
ALLGEQGKGFRLAQDRLGPGRVHHCMRTIGQCEVALELMCERALERKAFGRHLADYANIQDWIAESRLEIDQARLLVMKA
AHRMDREGNAAARVDVSAIKLVAARLQTRIVDRAMQVFGAMGLTPDTPLSYLWTWGRAMRFLDGPDEVHLRVVARAELAS
AKAQAGRNAHHFVPPDALLGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI48976061, Length=398, Percent_Identity=50.7537688442211, Blast_Score=370, Evalue=1e-102,
Organism=Homo sapiens, GI211971008, Length=398, Percent_Identity=50.7537688442211, Blast_Score=370, Evalue=1e-102,
Organism=Homo sapiens, GI38505218, Length=404, Percent_Identity=46.2871287128713, Blast_Score=369, Evalue=1e-102,
Organism=Homo sapiens, GI4557233, Length=282, Percent_Identity=32.2695035460993, Blast_Score=129, Evalue=8e-30,
Organism=Homo sapiens, GI21361497, Length=353, Percent_Identity=25.7790368271955, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI4501859, Length=334, Percent_Identity=26.9461077844311, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI4557231, Length=413, Percent_Identity=22.7602905569007, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI187960098, Length=413, Percent_Identity=22.7602905569007, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI4501857, Length=318, Percent_Identity=27.3584905660377, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI7656849, Length=283, Percent_Identity=29.3286219081272, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI226958412, Length=394, Percent_Identity=25.3807106598985, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI226958414, Length=347, Percent_Identity=26.2247838616715, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI4557235, Length=320, Percent_Identity=23.125, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI76496475, Length=329, Percent_Identity=22.7963525835866, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI87081958, Length=309, Percent_Identity=28.1553398058252, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1786223, Length=265, Percent_Identity=26.7924528301887, Blast_Score=89, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17562446, Length=364, Percent_Identity=50, Blast_Score=363, Evalue=1e-101,
Organism=Caenorhabditis elegans, GI17534899, Length=402, Percent_Identity=24.8756218905473, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17508101, Length=288, Percent_Identity=28.4722222222222, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17569725, Length=342, Percent_Identity=24.8538011695906, Blast_Score=119, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17570075, Length=416, Percent_Identity=24.0384615384615, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17533517, Length=283, Percent_Identity=30.3886925795053, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17506239, Length=284, Percent_Identity=27.4647887323944, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71990804, Length=217, Percent_Identity=31.7972350230415, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71985184, Length=323, Percent_Identity=25.077399380805, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17505929, Length=398, Percent_Identity=24.1206030150754, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17538396, Length=286, Percent_Identity=26.5734265734266, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17551932, Length=386, Percent_Identity=23.0569948186528, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71985192, Length=261, Percent_Identity=24.904214559387, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI32563615, Length=188, Percent_Identity=27.1276595744681, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21356377, Length=278, Percent_Identity=31.294964028777, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24646207, Length=291, Percent_Identity=30.2405498281787, Blast_Score=124, Evalue=8e-29,
Organism=Drosophila melanogaster, GI281363737, Length=381, Percent_Identity=25.4593175853018, Blast_Score=115, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24666513, Length=280, Percent_Identity=27.5, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24660351, Length=295, Percent_Identity=25.7627118644068, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI21355753, Length=295, Percent_Identity=25.0847457627119, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.3

Molecular weight: Translated: 47004; Mature: 47004

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFDDSDKVARLRAQLSDFMRFHVEPANVAWHRDVAAGRYPSALIERLKSRAFSEDLWNL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
FLPSLGDDDPGQRLSNLEYAPLAEIMGRIHWASEVFNCSAPDTGNMELLQLAATPEQRRQ
HCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHH
WLEPLLIGEIRSCFAMSEPDAASSDARNIRTTIARDGDDYVVNGRKWFITGAAHPNCKLA
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEECCEEEEEECCCCCCCEEE
IVMGVTGDHLDPNSTERHSMLLVPMDTPGLSIVRNIPVMHYHSPEGHCELLFRDVRVPVT
EEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH
ALLGEQGKGFRLAQDRLGPGRVHHCMRTIGQCEVALELMCERALERKAFGRHLADYANIQ
HHHCCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DWIAESRLEIDQARLLVMKAAHRMDREGNAAARVDVSAIKLVAARLQTRIVDRAMQVFGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
MGLTPDTPLSYLWTWGRAMRFLDGPDEVHLRVVARAELASAKAQAGRNAHHFVPPDALLG
CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCCHHHCC
G
C
>Mature Secondary Structure
MDFDDSDKVARLRAQLSDFMRFHVEPANVAWHRDVAAGRYPSALIERLKSRAFSEDLWNL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
FLPSLGDDDPGQRLSNLEYAPLAEIMGRIHWASEVFNCSAPDTGNMELLQLAATPEQRRQ
HCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHH
WLEPLLIGEIRSCFAMSEPDAASSDARNIRTTIARDGDDYVVNGRKWFITGAAHPNCKLA
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEECCEEEEEECCCCCCCEEE
IVMGVTGDHLDPNSTERHSMLLVPMDTPGLSIVRNIPVMHYHSPEGHCELLFRDVRVPVT
EEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH
ALLGEQGKGFRLAQDRLGPGRVHHCMRTIGQCEVALELMCERALERKAFGRHLADYANIQ
HHHCCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DWIAESRLEIDQARLLVMKAAHRMDREGNAAARVDVSAIKLVAARLQTRIVDRAMQVFGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
MGLTPDTPLSYLWTWGRAMRFLDGPDEVHLRVVARAELASAKAQAGRNAHHFVPPDALLG
CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCCHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: acyl-CoA; acceptor

Specific reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]