Click here to switch to the map view.

The map label for this gene is yjnA [H]

Identifier: 86751708

GI number: 86751708

Start: 5208204

End: 5209127

Strand: Direct

Name: yjnA [H]

Synonym: RPB_4610

Alternate gene names: 86751708

Gene position: 5208204-5209127 (Clockwise)

Preceding gene: 86751707

Following gene: 86751709

Centisome position: 97.68

GC content: 66.88

Gene sequence:

>924_bases
GTGCAGCTTTATCTCCCGATCGCAGACCTGCCGGTCAACGTCCTGCTCATCCTCGCGATGGGCGCCGCGGTCGGGTTCGT
GTCCGGCATGTTCGGCGTCGGCGGCGGCTTTCTACTCACCCCGCTGCTGATTTTCGTGGGCATCGCGCCCGCCGTCGCGG
TGGCGTCCGTCACCAGCCACATGGCGGCCTCGTCGTTTTCCGGGGCTTTGTCGTATTGGCGGCGCCGCGCGATCGATCCG
ATGCTGGCCTTCGTGCTGCTGTGCGGCGGCATCGCCGGCACCGCCCTCGGCGTGTGGTTCTTCGTGCTGATGCGTTCGAT
CGGCCAGCTCGATCTGACGATTGCGCTGGCCTATGTGGTGCTGCTGACGGGAGTCGGCGGGCTGATGGTCTATGAGGGCC
TGCGAGCGATCCTGCGCACCCGCCGCGGCGAAGTCGCGCTCAGTGGCCGCACCGGCAACCGCAACTGGATCCACGCGCTG
CCGCTGAAGATCCGGTTCAAACGTTCCAAGATGTATCTGTCGGTGATCCCGGTGGTGACGATCGGCCTCCTGATCGGCTT
CATCGGCGCGGTGATGGGCGTCGGCGGCGGCTTCATTCTGGTGCCGATGCTGATCTATCTGCTGCGGGTGCCGACCAGCA
TGGTGGTCGGCACGTCGATGGTGCTGACGCTGGTGACGATGCTGATCGCCACCATCCTGCACGCTGCGACCAACCATCTG
GTCGACGCGGTGCTGGCGCTGATGCTGATGATCGGCGGCGTCACCGGGGCGCAGTTCGGCGCCCGCGCCGGCCAGCGCAT
CCGCAGCGAGCAGCTGCGGCTGTTGCTGGGCCTTCTGGTGCTCGGGGTCGGGGTCCGCTTCGGTGTCGAGCTCGGCATCC
GCCCGGACGAGCTTTTCACCATCCGTGATACGGGGCCGAGCTGA

Upstream 100 bases:

>100_bases
GATTCGTTAATCCCTGCTCAGCCCGATTTCGGCTATTCAGGGTTGTCGGGTCGACGATCCGCGCTTTCAGCCACAGCGAC
GAACTCCGAAGCGACCGCGC

Downstream 100 bases:

>100_bases
TGGCACGGCGTCGCTTATCGGCCTTCGCATTCACCGTCGCAGCTGCGTTCGGGCTCGCCTGCGCCTGGCCGGCGCAGGCC
GAGAAACTGATCGTCTCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MQLYLPIADLPVNVLLILAMGAAVGFVSGMFGVGGGFLLTPLLIFVGIAPAVAVASVTSHMAASSFSGALSYWRRRAIDP
MLAFVLLCGGIAGTALGVWFFVLMRSIGQLDLTIALAYVVLLTGVGGLMVYEGLRAILRTRRGEVALSGRTGNRNWIHAL
PLKIRFKRSKMYLSVIPVVTIGLLIGFIGAVMGVGGGFILVPMLIYLLRVPTSMVVGTSMVLTLVTMLIATILHAATNHL
VDAVLALMLMIGGVTGAQFGARAGQRIRSEQLRLLLGLLVLGVGVRFGVELGIRPDELFTIRDTGPS

Sequences:

>Translated_307_residues
MQLYLPIADLPVNVLLILAMGAAVGFVSGMFGVGGGFLLTPLLIFVGIAPAVAVASVTSHMAASSFSGALSYWRRRAIDP
MLAFVLLCGGIAGTALGVWFFVLMRSIGQLDLTIALAYVVLLTGVGGLMVYEGLRAILRTRRGEVALSGRTGNRNWIHAL
PLKIRFKRSKMYLSVIPVVTIGLLIGFIGAVMGVGGGFILVPMLIYLLRVPTSMVVGTSMVLTLVTMLIATILHAATNHL
VDAVLALMLMIGGVTGAQFGARAGQRIRSEQLRLLLGLLVLGVGVRFGVELGIRPDELFTIRDTGPS
>Mature_307_residues
MQLYLPIADLPVNVLLILAMGAAVGFVSGMFGVGGGFLLTPLLIFVGIAPAVAVASVTSHMAASSFSGALSYWRRRAIDP
MLAFVLLCGGIAGTALGVWFFVLMRSIGQLDLTIALAYVVLLTGVGGLMVYEGLRAILRTRRGEVALSGRTGNRNWIHAL
PLKIRFKRSKMYLSVIPVVTIGLLIGFIGAVMGVGGGFILVPMLIYLLRVPTSMVVGTSMVLTLVTMLIATILHAATNHL
VDAVLALMLMIGGVTGAQFGARAGQRIRSEQLRLLLGLLVLGVGVRFGVELGIRPDELFTIRDTGPS

Specific function: Unknown

COG id: COG0730

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0721 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002781 [H]

Pfam domain/function: PF01925 DUF81 [H]

EC number: NA

Molecular weight: Translated: 32458; Mature: 32458

Theoretical pI: Translated: 11.48; Mature: 11.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLYLPIADLPVNVLLILAMGAAVGFVSGMFGVGGGFLLTPLLIFVGIAPAVAVASVTSH
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MAASSFSGALSYWRRRAIDPMLAFVLLCGGIAGTALGVWFFVLMRSIGQLDLTIALAYVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LLTGVGGLMVYEGLRAILRTRRGEVALSGRTGNRNWIHALPLKIRFKRSKMYLSVIPVVT
HHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEECCEEEEEHHHHHHHHHHHHHH
IGLLIGFIGAVMGVGGGFILVPMLIYLLRVPTSMVVGTSMVLTLVTMLIATILHAATNHL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDAVLALMLMIGGVTGAQFGARAGQRIRSEQLRLLLGLLVLGVGVRFGVELGIRPDELFT
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCEEE
IRDTGPS
EECCCCC
>Mature Secondary Structure
MQLYLPIADLPVNVLLILAMGAAVGFVSGMFGVGGGFLLTPLLIFVGIAPAVAVASVTSH
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MAASSFSGALSYWRRRAIDPMLAFVLLCGGIAGTALGVWFFVLMRSIGQLDLTIALAYVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LLTGVGGLMVYEGLRAILRTRRGEVALSGRTGNRNWIHALPLKIRFKRSKMYLSVIPVVT
HHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEECCEEEEEHHHHHHHHHHHHHH
IGLLIGFIGAVMGVGGGFILVPMLIYLLRVPTSMVVGTSMVLTLVTMLIATILHAATNHL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDAVLALMLMIGGVTGAQFGARAGQRIRSEQLRLLLGLLVLGVGVRFGVELGIRPDELFT
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCEEE
IRDTGPS
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]