Click here to switch to the map view.

The map label for this gene is xerC [H]

Identifier: 86751622

GI number: 86751622

Start: 5112589

End: 5113521

Strand: Direct

Name: xerC [H]

Synonym: RPB_4524

Alternate gene names: 86751622

Gene position: 5112589-5113521 (Clockwise)

Preceding gene: 86751620

Following gene: 86751623

Centisome position: 95.89

GC content: 66.88

Gene sequence:

>933_bases
ATGACCCTCAGCAAACCTATCGTGAGCTTTCTCGATCATTGCTCGGTCGAGCGGCAGTTGTCGGACCATACGTTGCAGGC
TTACGGCTACGATCTGGCGGATTTTGCCGCGTGGGTGGGGACGCGGCGGCGGAAGGACAAGGCCTTCTCCGCCGGTGCGC
CAATCGAGACCGACCACCTGCGCGCCTATCTCGAGCACATGACCGAGCGGAAGCTGTCGGCTGCGACGGTGCGGCGGCGG
CTCGCTTGCTTGCGGTCGTTTTTCCGCTACCTGGAAGATCGCGGCACGATGCCCAATCCTTTCGATGGCTGGCGACTGAA
GCTGCCGAAGCGCAAGCGGTTGCCGCGGACGCTGTCGCGCGACGAGACCACGCAGCTGCTGAAATCGGCGCGAGCGCCGG
GTGCGGCCCGGCATGCAGCACCCGAGTCGCCATCGCTGTGCACCGAAATCCGGCTGATGATCGCCACCGGCATCCGGATC
GGCGAACTCTGCAAGATCGCCAGCACCGACGTCTCCAGCGACGGCGCGGCGATCCGGATTCACGGCAAGGGCTCGCGCGA
CCGGATGGTGTACGTCACCGACAACGGCCTGCGCGCCGAGCTTCGCAAGCTCGCGGTGCTGCGCCAGCGTACGCTCGGCG
GCGATGGGCCGCTGTTCCTCAACCGCAACGGCGACAAGCTGCGGCCGCATTCGTTTCGTGCCAAGCTGCGCAATTTTGCG
GGGCAAGCCGGCGTCCGCCGCCGCGTCACGCCGCACATGCTTCGCCACACCGCGGCGACGCTGCTGATCGAGAGCGGCGT
GGATATCCGGATCGTGCAGCGGCTGCTCGGCCATTCGAGCATCGCCACCACCGAGATCTACACCCACGTCTCCGACGAGG
CGCTGCGGTCGACGCTGGCGCGCGCGAACATTCTCGCCGGGCTGGCGCGCTAA

Upstream 100 bases:

>100_bases
CTCAACCAATAACCTCAATTCCAGAAATGCCTGCATGCTGCGTAGCGCAGAGCCGATTGATACCTCACAAGTTCTCTGCC
CCGGTTGGGCGGAGTGCGGA

Downstream 100 bases:

>100_bases
TCCGCGCCGGCTGCTACGCCATCGCCCATCGGGTGGTTGTTCGCCTCCACAGTTGACAAAACTCCCCTCGCGGGTCCTAC
TGGCTGCATGATCAACCGCG

Product: Phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTLSKPIVSFLDHCSVERQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFSAGAPIETDHLRAYLEHMTERKLSAATVRRR
LACLRSFFRYLEDRGTMPNPFDGWRLKLPKRKRLPRTLSRDETTQLLKSARAPGAARHAAPESPSLCTEIRLMIATGIRI
GELCKIASTDVSSDGAAIRIHGKGSRDRMVYVTDNGLRAELRKLAVLRQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFA
GQAGVRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRSTLARANILAGLAR

Sequences:

>Translated_310_residues
MTLSKPIVSFLDHCSVERQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFSAGAPIETDHLRAYLEHMTERKLSAATVRRR
LACLRSFFRYLEDRGTMPNPFDGWRLKLPKRKRLPRTLSRDETTQLLKSARAPGAARHAAPESPSLCTEIRLMIATGIRI
GELCKIASTDVSSDGAAIRIHGKGSRDRMVYVTDNGLRAELRKLAVLRQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFA
GQAGVRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRSTLARANILAGLAR
>Mature_309_residues
TLSKPIVSFLDHCSVERQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFSAGAPIETDHLRAYLEHMTERKLSAATVRRRL
ACLRSFFRYLEDRGTMPNPFDGWRLKLPKRKRLPRTLSRDETTQLLKSARAPGAARHAAPESPSLCTEIRLMIATGIRIG
ELCKIASTDVSSDGAAIRIHGKGSRDRMVYVTDNGLRAELRKLAVLRQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFAG
QAGVRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRSTLARANILAGLAR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=304, Percent_Identity=31.25, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1790244, Length=302, Percent_Identity=29.1390728476821, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1790767, Length=173, Percent_Identity=28.9017341040462, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34681; Mature: 34549

Theoretical pI: Translated: 11.39; Mature: 11.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSKPIVSFLDHCSVERQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFSAGAPIETDHL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
RAYLEHMTERKLSAATVRRRLACLRSFFRYLEDRGTMPNPFDGWRLKLPKRKRLPRTLSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHCCCCCCCH
DETTQLLKSARAPGAARHAAPESPSLCTEIRLMIATGIRIGELCKIASTDVSSDGAAIRI
HHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEE
HGKGSRDRMVYVTDNGLRAELRKLAVLRQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFA
ECCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHH
GQAGVRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRSTLA
HHHCCHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RANILAGLAR
HHHHHHHHCC
>Mature Secondary Structure 
TLSKPIVSFLDHCSVERQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFSAGAPIETDHL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
RAYLEHMTERKLSAATVRRRLACLRSFFRYLEDRGTMPNPFDGWRLKLPKRKRLPRTLSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHCCCCCCCH
DETTQLLKSARAPGAARHAAPESPSLCTEIRLMIATGIRIGELCKIASTDVSSDGAAIRI
HHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEE
HGKGSRDRMVYVTDNGLRAELRKLAVLRQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFA
ECCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHH
GQAGVRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRSTLA
HHHCCHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RANILAGLAR
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA