BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is fadB1 [H]

Identifier: 86751553

GI number: 86751553

Start: 5043450

End: 5044211

Strand: Direct

Name: fadB1 [H]

Synonym: RPB_4455

Alternate gene names: 86751553

Gene position: 5043450-5044211 (Clockwise)

Preceding gene: 86751552

Following gene: 86751555

Centisome position: 94.59

GC content: 66.93

Gene sequence:

>762_bases
ATGTCGGACTATCTGATCGTCAGCGATGAAGACGCCGTGCGCGTGATCACCATGCGCCGGCCGGAGAAGAAGAACGCGCT
GACGCAGGACATGTATCGGGCGATGACCGCGGCGATCGACAGCGCGCAGAACGATCCGACCATCCGCTGCCTGATCATCA
CCGGCGGCTCCGGCGTGTTCACCGCCGGCAACGACCTCGAGGATTTCCTCAAGGCCGGCACCGATGCGAGCGGCGCGCCG
CGCGTCACCGCGGCGACGGATTTTCTCTACGCGCTCGCGCGCAATACCAAGCCGCTGATCGCCGCGGTCGACGGGCTGGC
GATCGGCATCGGCACCACGCTGCTGTTCCACTGCGACTATGTGCTGGCCTCGACCTCGGCGGTGTTCTCGACGCCGTTCA
TCCAGCTCGGCCTGGTGCCGGAGGGCGCCTCCAGCCTGCTGGCGCCGCGCGCCATGGGCCATCACCGCGCCTTCGCCATG
CTGGTGATGGGCCGCAAACTCTCCGCCGACGACGCCCGCGACGCCGGCTTCGTCAACGCCGTGGTGGCGCCCGGCCACAC
CGAAGAGGAAGCCATGAAAGCCGCCCGCGACATCTGCGCGCTGCCGGCCGAAGCGGTGGCGATCTCGCGCAAGCTGATCA
AGCCGTCACCGACGGATCTGATCGCGCGGATCGATCAGGAGAGCAAACTGTTCGGCGAGCGGATGAAGTCGCAGGAAGCG
ATCGGGGCGTTCACGCGGTTCTTTCAGAGGAAGAAGGGGTAG

Upstream 100 bases:

>100_bases
CCGCCGCGGTCCTGGCCACCGCCGACGCCGTGCTGACCGCGTAGACGGCGACGCATTCACGACAACCGCGCCACAATTGC
GGGCTTTTGGGGGAAATGCC

Downstream 100 bases:

>100_bases
GCAGCGCGGGGACGATTAGTTCGCCGCGGAGAGCCCACCTCCTCGAACGACACGCCGCAAGTCGATACCCTTGGCTCCGT
CATGCCCGGCCCTGTGCCGG

Product: enoyl-CoA hydratase/isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MSDYLIVSDEDAVRVITMRRPEKKNALTQDMYRAMTAAIDSAQNDPTIRCLIITGGSGVFTAGNDLEDFLKAGTDASGAP
RVTAATDFLYALARNTKPLIAAVDGLAIGIGTTLLFHCDYVLASTSAVFSTPFIQLGLVPEGASSLLAPRAMGHHRAFAM
LVMGRKLSADDARDAGFVNAVVAPGHTEEEAMKAARDICALPAEAVAISRKLIKPSPTDLIARIDQESKLFGERMKSQEA
IGAFTRFFQRKKG

Sequences:

>Translated_253_residues
MSDYLIVSDEDAVRVITMRRPEKKNALTQDMYRAMTAAIDSAQNDPTIRCLIITGGSGVFTAGNDLEDFLKAGTDASGAP
RVTAATDFLYALARNTKPLIAAVDGLAIGIGTTLLFHCDYVLASTSAVFSTPFIQLGLVPEGASSLLAPRAMGHHRAFAM
LVMGRKLSADDARDAGFVNAVVAPGHTEEEAMKAARDICALPAEAVAISRKLIKPSPTDLIARIDQESKLFGERMKSQEA
IGAFTRFFQRKKG
>Mature_252_residues
SDYLIVSDEDAVRVITMRRPEKKNALTQDMYRAMTAAIDSAQNDPTIRCLIITGGSGVFTAGNDLEDFLKAGTDASGAPR
VTAATDFLYALARNTKPLIAAVDGLAIGIGTTLLFHCDYVLASTSAVFSTPFIQLGLVPEGASSLLAPRAMGHHRAFAML
VMGRKLSADDARDAGFVNAVVAPGHTEEEAMKAARDICALPAEAVAISRKLIKPSPTDLIARIDQESKLFGERMKSQEAI
GAFTRFFQRKKG

Specific function: Could possibly oxidize fatty acids using specific components [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]

Homologues:

Organism=Homo sapiens, GI45643119, Length=251, Percent_Identity=33.0677290836653, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI260275230, Length=251, Percent_Identity=33.0677290836653, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI260274832, Length=251, Percent_Identity=33.0677290836653, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI221136756, Length=252, Percent_Identity=27.7777777777778, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI221136753, Length=252, Percent_Identity=27.7777777777778, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI4757968, Length=252, Percent_Identity=28.1746031746032, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI49355787, Length=252, Percent_Identity=28.1746031746032, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI221307494, Length=252, Percent_Identity=27.7777777777778, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI25453481, Length=252, Percent_Identity=27.3809523809524, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI51538573, Length=252, Percent_Identity=27.3809523809524, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI194097323, Length=254, Percent_Identity=27.1653543307087, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI4757966, Length=198, Percent_Identity=31.8181818181818, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI51538581, Length=198, Percent_Identity=31.8181818181818, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI31542718, Length=245, Percent_Identity=28.1632653061224, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI68989263, Length=211, Percent_Identity=30.8056872037915, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI116235487, Length=253, Percent_Identity=26.0869565217391, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI70995211, Length=187, Percent_Identity=27.807486631016, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI20127408, Length=176, Percent_Identity=26.7045454545455, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI4502327, Length=203, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI37594469, Length=184, Percent_Identity=26.6304347826087, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI37594471, Length=188, Percent_Identity=27.1276595744681, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1787660, Length=254, Percent_Identity=31.496062992126, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1787659, Length=255, Percent_Identity=30.1960784313725, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI221142681, Length=201, Percent_Identity=31.8407960199005, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1788597, Length=191, Percent_Identity=29.3193717277487, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790281, Length=175, Percent_Identity=25.7142857142857, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17535521, Length=252, Percent_Identity=37.3015873015873, Blast_Score=149, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17549921, Length=249, Percent_Identity=29.718875502008, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI25145438, Length=222, Percent_Identity=28.3783783783784, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17554946, Length=251, Percent_Identity=25.8964143426295, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560910, Length=190, Percent_Identity=28.9473684210526, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17540714, Length=230, Percent_Identity=26.5217391304348, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17536985, Length=136, Percent_Identity=32.3529411764706, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17508951, Length=209, Percent_Identity=25.3588516746411, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25144276, Length=210, Percent_Identity=25.2380952380952, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508953, Length=209, Percent_Identity=25.3588516746411, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17558304, Length=209, Percent_Identity=22.0095693779904, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323314, Length=191, Percent_Identity=25.130890052356, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320241, Length=184, Percent_Identity=23.9130434782609, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24654903, Length=251, Percent_Identity=29.4820717131474, Blast_Score=114, Evalue=5e-26,
Organism=Drosophila melanogaster, GI20129971, Length=193, Percent_Identity=30.5699481865285, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24653477, Length=193, Percent_Identity=30.5699481865285, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI19922422, Length=194, Percent_Identity=25.7731958762887, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24653139, Length=248, Percent_Identity=24.1935483870968, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19920382, Length=176, Percent_Identity=26.1363636363636, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650670, Length=211, Percent_Identity=25.5924170616114, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24667722, Length=200, Percent_Identity=26.5, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014748
- InterPro:   IPR001753
- InterPro:   IPR018376 [H]

Pfam domain/function: PF00378 ECH [H]

EC number: =4.2.1.17 [H]

Molecular weight: Translated: 27080; Mature: 26949

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDYLIVSDEDAVRVITMRRPEKKNALTQDMYRAMTAAIDSAQNDPTIRCLIITGGSGVF
CCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEE
TAGNDLEDFLKAGTDASGAPRVTAATDFLYALARNTKPLIAAVDGLAIGIGTTLLFHCDY
ECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH
VLASTSAVFSTPFIQLGLVPEGASSLLAPRAMGHHRAFAMLVMGRKLSADDARDAGFVNA
HHHCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
VVAPGHTEEEAMKAARDICALPAEAVAISRKLIKPSPTDLIARIDQESKLFGERMKSQEA
EECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHH
IGAFTRFFQRKKG
HHHHHHHHHHCCC
>Mature Secondary Structure 
SDYLIVSDEDAVRVITMRRPEKKNALTQDMYRAMTAAIDSAQNDPTIRCLIITGGSGVF
CCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEE
TAGNDLEDFLKAGTDASGAPRVTAATDFLYALARNTKPLIAAVDGLAIGIGTTLLFHCDY
ECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH
VLASTSAVFSTPFIQLGLVPEGASSLLAPRAMGHHRAFAMLVMGRKLSADDARDAGFVNA
HHHCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
VVAPGHTEEEAMKAARDICALPAEAVAISRKLIKPSPTDLIARIDQESKLFGERMKSQEA
EECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHH
IGAFTRFFQRKKG
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7751302; 11481430 [H]