Click here to switch to the map view.

The map label for this gene is ycaN [H]

Identifier: 86751490

GI number: 86751490

Start: 4972210

End: 4973154

Strand: Direct

Name: ycaN [H]

Synonym: RPB_4389

Alternate gene names: 86751490

Gene position: 4972210-4973154 (Clockwise)

Preceding gene: 86751481

Following gene: 86751491

Centisome position: 93.26

GC content: 69.1

Gene sequence:

>945_bases
ATGCTGCGAGCCTCGTTGCAGGATCTGGAGGCGGTGGCCGCGATCGCGCGGCGGGGCTCGTTTCGTGCGGCCGCGCTGGA
TCTCGGCGTGTCGACGACCGCGCTGAGCAATGCGATCGGCAAGCTCGAGGCGAGCCTGGGCATCCGCCTGTTCAACCGGA
CGACGCGCAGCGTATCGCTGACGGACACAGGACAGGTGTTCCTCAAACAGGTCGGGCCTGCGCTTCAGGACATTCGGGCG
GCGGTCGAAACCGCCCGGTCCCGGCAGGCGACGCCGTCGGGCAGCTTGCGGATCAACGCTTTCGCGATGGCCGCACGCGA
GATTCTGTCGCCGCTGATCCTCGAATTCCTGCGCCGATATCCGGACGTTCACGTCGATCTCGTCACCGAAGGACGATTGG
TCGACATCGTCGCGGAGGGCTTCGATCTCGGCGTCCGCGTCGCCGATCTGGTCCCCAGCGACATGATCGCGGTGTCGCTC
GGCAGGCCGCAGCGCTACGCCGTCGCCGGGTCGCCCCGCTATTTCGCGGAGCACGGCAAACCGCAGGGGCCGTCCGACCT
CGTCGATCACCGCTGCATCCGCGCGCGTCTGCCCAACGGCGCGCTGCTTCGCTGGCAGTTCGAGAAGGACGGGCGCGCGG
TGCAGATCGACGTCGACGGGCCGATCACGCTCGACGAAGCGAGCCTGGCGCGGACGGCGGCGCTGGAAGGCATCGGGATC
GGCTTCTTCATGGAGCAGGACGTGGTCGGCGACATCGAGGCGGGACGCCTGATCCGGGTGCTCGAGGATTGGACGCCGCC
CTTCGCCGGCTTGTGTCTCTACTACCCGGGACGGCGCAATCCCTCGGCGGCGATGAAGGCCTTCATCAGCCTCGCCCGCG
CCTGGGCGGGCAACGCGACGGCCGACCGCCCACGGCGCAGCCGACCCCGTGCGCCGCGCAAGTAA

Upstream 100 bases:

>100_bases
GATCGGCGGCCGATAGATCGGCCATGAGGCCTGACTAGCCGTGGACAACCATTTCGATAATCACCTATAATGAGGATGAA
GAATTTCGAAATTCGGGACA

Downstream 100 bases:

>100_bases
GTCCCGATCCGCGAGATCGACGCGCCGGGAGTCGATGCAGATCCACCGCGCGATGTGAAGCTCCTCGGCCGCGCAGCAGG
TCGGGCTTTCGATCCGAACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLRASLQDLEAVAAIARRGSFRAAALDLGVSTTALSNAIGKLEASLGIRLFNRTTRSVSLTDTGQVFLKQVGPALQDIRA
AVETARSRQATPSGSLRINAFAMAAREILSPLILEFLRRYPDVHVDLVTEGRLVDIVAEGFDLGVRVADLVPSDMIAVSL
GRPQRYAVAGSPRYFAEHGKPQGPSDLVDHRCIRARLPNGALLRWQFEKDGRAVQIDVDGPITLDEASLARTAALEGIGI
GFFMEQDVVGDIEAGRLIRVLEDWTPPFAGLCLYYPGRRNPSAAMKAFISLARAWAGNATADRPRRSRPRAPRK

Sequences:

>Translated_314_residues
MLRASLQDLEAVAAIARRGSFRAAALDLGVSTTALSNAIGKLEASLGIRLFNRTTRSVSLTDTGQVFLKQVGPALQDIRA
AVETARSRQATPSGSLRINAFAMAAREILSPLILEFLRRYPDVHVDLVTEGRLVDIVAEGFDLGVRVADLVPSDMIAVSL
GRPQRYAVAGSPRYFAEHGKPQGPSDLVDHRCIRARLPNGALLRWQFEKDGRAVQIDVDGPITLDEASLARTAALEGIGI
GFFMEQDVVGDIEAGRLIRVLEDWTPPFAGLCLYYPGRRNPSAAMKAFISLARAWAGNATADRPRRSRPRAPRK
>Mature_314_residues
MLRASLQDLEAVAAIARRGSFRAAALDLGVSTTALSNAIGKLEASLGIRLFNRTTRSVSLTDTGQVFLKQVGPALQDIRA
AVETARSRQATPSGSLRINAFAMAAREILSPLILEFLRRYPDVHVDLVTEGRLVDIVAEGFDLGVRVADLVPSDMIAVSL
GRPQRYAVAGSPRYFAEHGKPQGPSDLVDHRCIRARLPNGALLRWQFEKDGRAVQIDVDGPITLDEASLARTAALEGIGI
GFFMEQDVVGDIEAGRLIRVLEDWTPPFAGLCLYYPGRRNPSAAMKAFISLARAWAGNATADRPRRSRPRAPRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=309, Percent_Identity=41.1003236245955, Blast_Score=250, Evalue=8e-68,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=37.5862068965517, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=30.6896551724138, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=30.3448275862069, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1789440, Length=293, Percent_Identity=27.9863481228669, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789639, Length=257, Percent_Identity=29.5719844357977, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI145693193, Length=286, Percent_Identity=30.7692307692308, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787601, Length=138, Percent_Identity=34.0579710144928, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1786448, Length=300, Percent_Identity=24.3333333333333, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=25.6666666666667, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI157672245, Length=150, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1789173, Length=270, Percent_Identity=27.037037037037, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788748, Length=127, Percent_Identity=33.0708661417323, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790399, Length=123, Percent_Identity=31.7073170731707, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34123; Mature: 34123

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRASLQDLEAVAAIARRGSFRAAALDLGVSTTALSNAIGKLEASLGIRLFNRTTRSVSL
CCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCEEEEECCCCEEEE
TDTGQVFLKQVGPALQDIRAAVETARSRQATPSGSLRINAFAMAAREILSPLILEFLRRY
CCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHC
PDVHVDLVTEGRLVDIVAEGFDLGVRVADLVPSDMIAVSLGRPQRYAVAGSPRYFAEHGK
CCCEEEEEECCEEEEEECCCCCCCEEEHHCCCCCEEEEECCCCCEEEECCCCHHHHHCCC
PQGPSDLVDHRCIRARLPNGALLRWQFEKDGRAVQIDVDGPITLDEASLARTAALEGIGI
CCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCEEECHHHHHHHHHHCCCCE
GFFMEQDVVGDIEAGRLIRVLEDWTPPFAGLCLYYPGRRNPSAAMKAFISLARAWAGNAT
EEEECCCCCCCCCHHHHHHHHHHCCCCHHCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
ADRPRRSRPRAPRK
CCCCCCCCCCCCCC
>Mature Secondary Structure
MLRASLQDLEAVAAIARRGSFRAAALDLGVSTTALSNAIGKLEASLGIRLFNRTTRSVSL
CCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCEEEEECCCCEEEE
TDTGQVFLKQVGPALQDIRAAVETARSRQATPSGSLRINAFAMAAREILSPLILEFLRRY
CCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHC
PDVHVDLVTEGRLVDIVAEGFDLGVRVADLVPSDMIAVSLGRPQRYAVAGSPRYFAEHGK
CCCEEEEEECCEEEEEECCCCCCCEEEHHCCCCCEEEEECCCCCEEEECCCCHHHHHCCC
PQGPSDLVDHRCIRARLPNGALLRWQFEKDGRAVQIDVDGPITLDEASLARTAALEGIGI
CCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCEEECHHHHHHHHHHCCCCE
GFFMEQDVVGDIEAGRLIRVLEDWTPPFAGLCLYYPGRRNPSAAMKAFISLARAWAGNAT
EEEECCCCCCCCCHHHHHHHHHHCCCCHHCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
ADRPRRSRPRAPRK
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]